Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:164860682-165061468

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63 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D2Mit227 2 164869474 to 164869584 110 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 227
D2Mit342 2 164869485 to 164869576 91 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 342
4930445K14Rik 2 164878287 to 164883451 5164 - protein coding gene RIKEN cDNA 4930445K14 gene
Cpgi12676 2 164878731 to 164880313 1582 CpG island CpG island 12676
Tssr21683 2 164879358 to 164879398 40 + TSS region transcription start site region 21683
Pcif1 2 164879368 to 164891437 12069 + protein coding gene PDX1 C-terminal inhibiting factor 1
Tssr27592 2 164879735 to 164879804 69 - TSS region transcription start site region 27592
Tssr21684 2 164880016 to 164880039 23 + TSS region transcription start site region 21684
Tssr21685 2 164880045 to 164880061 16 + TSS region transcription start site region 21685
Gm46775 2 164887299 to 164891156 3857 - lncRNA gene predicted gene, 46775
Zfp335 2 164891892 to 164911750 19858 - protein coding gene zinc finger protein 335
Cpgi12677 2 164910494 to 164912365 1871 CpG island CpG island 12677
Tssr27593 2 164911175 to 164911210 35 - TSS region transcription start site region 27593
Tssr27594 2 164911218 to 164911239 21 - TSS region transcription start site region 27594
Tssr27595 2 164911258 to 164911299 41 - TSS region transcription start site region 27595
Zfp335os 2 164911354 to 164919953 8599 + antisense lncRNA gene zinc finger protein 335, opposite strand
Tssr21686 2 164911427 to 164911455 28 + TSS region transcription start site region 21686
Tssr27596 2 164911560 to 164911583 23 - TSS region transcription start site region 27596
Tssr27597 2 164911586 to 164911608 22 - TSS region transcription start site region 27597
2210414I22Rik 2 164911889 to 164912932 1043 unclassified gene RIKEN cDNA 2210414I22 gene
Cpgi12678 2 164938440 to 164938976 536 CpG island CpG island 12678
Tssr21687 2 164940742 to 164940765 23 + TSS region transcription start site region 21687
Mmp9 2 164940780 to 164955850 15070 + protein coding gene matrix metallopeptidase 9
Tssr21688 2 164947061 to 164947075 14 + TSS region transcription start site region 21688
Tssr21689 2 164947741 to 164947748 7 + TSS region transcription start site region 21689
D2Dcr116 2 164948060 to 164948171 111 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 116
D2Mit1000 2 164948062 to 164948198 136 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 1000
Tssr21690 2 164948231 to 164948245 14 + TSS region transcription start site region 21690
Cpgi12679 2 164949088 to 164950499 1411 CpG island CpG island 12679
Cpgi12680 2 164950785 to 164951241 456 CpG island CpG island 12680
Tssr21691 2 164951150 to 164951161 11 + TSS region transcription start site region 21691
Tssr21692 2 164951210 to 164951221 11 + TSS region transcription start site region 21692
Tssr21693 2 164952423 to 164952434 11 + TSS region transcription start site region 21693
Cpgi12681 2 164953114 to 164953661 547 CpG island CpG island 12681
Cpgi12682 2 164960682 to 164961468 786 CpG island CpG island 12682
Tssr21694 2 164960809 to 164960833 24 + TSS region transcription start site region 21694
Slc12a5 2 164960821 to 164999731 38910 + protein coding gene solute carrier family 12, member 5
Tssr21695 2 164960846 to 164960863 17 + TSS region transcription start site region 21695
Gm46776 2 164961064 to 164964371 3307 - lncRNA gene predicted gene, 46776
Cpgi12683 2 164967709 to 164969191 1482 CpG island CpG island 12683
Tssr21696 2 164968166 to 164968180 14 + TSS region transcription start site region 21696
Tssr21697 2 164968219 to 164968255 36 + TSS region transcription start site region 21697
Tssr21698 2 164968264 to 164968317 53 + TSS region transcription start site region 21698
Tssr21699 2 164968320 to 164968323 3 + TSS region transcription start site region 21699
Cpgi12684 2 164969265 to 164969630 365 CpG island CpG island 12684
Cpgi12685 2 164970641 to 164971515 874 CpG island CpG island 12685
Tssr21700 2 164995983 to 164995987 4 + TSS region transcription start site region 21700
Cpgi12686 2 164997080 to 164998311 1231 CpG island CpG island 12686
Ncoa5 2 165000357 to 165034867 34510 - protein coding gene nuclear receptor coactivator 5
Tssr27598 2 165004347 to 165004359 12 - TSS region transcription start site region 27598
Gm19133 2 165004892 to 165006988 2096 - pseudogene predicted gene, 19133
Cpgi12687 2 165033725 to 165035139 1414 CpG island CpG island 12687
Tssr27599 2 165034456 to 165034488 32 - TSS region transcription start site region 27599
Tssr27600 2 165034528 to 165034578 50 - TSS region transcription start site region 27600
Tssr27601 2 165034770 to 165034820 50 - TSS region transcription start site region 27601
Tssr27602 2 165034821 to 165034859 38 - TSS region transcription start site region 27602
Cpgi12688 2 165055599 to 165055761 162 CpG island CpG island 12688
Cd40 2 165055608 to 165071654 16046 + protein coding gene CD40 antigen
Tssr21701 2 165055625 to 165055661 36 + TSS region transcription start site region 21701
Tssr21702 2 165055668 to 165055690 22 + TSS region transcription start site region 21702
Tssr21703 2 165058259 to 165058270 11 + TSS region transcription start site region 21703
Tssr21704 2 165059291 to 165059304 13 + TSS region transcription start site region 21704
Tssr21705 2 165059922 to 165059931 9 + TSS region transcription start site region 21705