Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:164827423-165077434

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163 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Spata25 2 164827382 to 164828534 1152 - protein coding gene spermatogenesis associated 25
Tssr27544 2 164828479 to 164828499 20 - TSS region transcription start site region 27544
Tssr27545 2 164828529 to 164828537 8 - TSS region transcription start site region 27545
Neurl2 2 164830732 to 164833456 2724 - protein coding gene neuralized E3 ubiquitin protein ligase 2
Cpgi12674 2 164832712 to 164834417 1705 CpG island CpG island 12674
Tssr21656 2 164832862 to 164832878 16 + TSS region transcription start site region 21656
Ctsa 2 164832873 to 164841032 8159 + protein coding gene cathepsin A
Tssr21657 2 164832881 to 164832935 54 + TSS region transcription start site region 21657
Tssr21658 2 164832959 to 164832970 11 + TSS region transcription start site region 21658
Tssr27546 2 164833438 to 164833480 42 - TSS region transcription start site region 27546
Tssr21659 2 164833766 to 164833775 9 + TSS region transcription start site region 21659
Tssr21660 2 164833781 to 164833812 31 + TSS region transcription start site region 21660
Tssr21661 2 164833841 to 164833852 11 + TSS region transcription start site region 21661
Tssr21662 2 164834015 to 164834048 33 + TSS region transcription start site region 21662
Tssr21663 2 164834076 to 164834097 21 + TSS region transcription start site region 21663
Tssr21664 2 164834107 to 164834138 31 + TSS region transcription start site region 21664
Tssr21665 2 164834863 to 164834884 21 + TSS region transcription start site region 21665
Tssr21666 2 164835174 to 164835199 25 + TSS region transcription start site region 21666
Tssr21667 2 164835227 to 164835280 53 + TSS region transcription start site region 21667
Tssr21668 2 164835629 to 164835651 22 + TSS region transcription start site region 21668
Tssr21669 2 164835681 to 164835692 11 + TSS region transcription start site region 21669
Tssr21670 2 164836411 to 164836458 47 + TSS region transcription start site region 21670
Tssr21671 2 164837000 to 164837032 32 + TSS region transcription start site region 21671
Tssr21672 2 164837201 to 164837221 20 + TSS region transcription start site region 21672
Tssr21673 2 164837368 to 164837404 36 + TSS region transcription start site region 21673
Tssr27547 2 164837403 to 164837450 47 - TSS region transcription start site region 27547
Tssr27548 2 164837453 to 164837477 24 - TSS region transcription start site region 27548
Tssr21674 2 164838079 to 164838112 33 + TSS region transcription start site region 21674
Tssr21675 2 164839220 to 164839261 41 + TSS region transcription start site region 21675
Tssr21676 2 164839299 to 164839319 20 + TSS region transcription start site region 21676
Tssr21677 2 164839513 to 164839546 33 + TSS region transcription start site region 21677
Pltp 2 164839518 to 164857708 18190 - protein coding gene phospholipid transfer protein
Tssr21678 2 164839576 to 164839600 24 + TSS region transcription start site region 21678
Tssr21679 2 164839682 to 164839712 30 + TSS region transcription start site region 21679
Tssr27549 2 164839697 to 164839706 9 - TSS region transcription start site region 27549
Tssr21680 2 164839714 to 164839774 60 + TSS region transcription start site region 21680
Tssr27550 2 164839721 to 164839752 31 - TSS region transcription start site region 27550
Tssr27551 2 164839773 to 164839782 9 - TSS region transcription start site region 27551
Tssr27552 2 164839801 to 164839815 14 - TSS region transcription start site region 27552
Tssr27553 2 164839820 to 164839831 11 - TSS region transcription start site region 27553
Tssr27554 2 164840142 to 164840156 14 - TSS region transcription start site region 27554
Tssr27555 2 164840161 to 164840192 31 - TSS region transcription start site region 27555
Tssr27556 2 164840360 to 164840371 11 - TSS region transcription start site region 27556
Tssr27557 2 164840375 to 164840394 19 - TSS region transcription start site region 27557
Tssr27558 2 164840521 to 164840557 36 - TSS region transcription start site region 27558
Tssr21681 2 164841538 to 164841557 19 + TSS region transcription start site region 21681
Tssr27559 2 164844461 to 164844474 13 - TSS region transcription start site region 27559
Tssr27560 2 164844480 to 164844504 24 - TSS region transcription start site region 27560
Tssr27561 2 164844627 to 164844663 36 - TSS region transcription start site region 27561
Tssr27562 2 164844671 to 164844689 18 - TSS region transcription start site region 27562
Tssr27563 2 164844697 to 164844706 9 - TSS region transcription start site region 27563
Tssr27564 2 164844710 to 164844730 20 - TSS region transcription start site region 27564
Tssr27565 2 164844739 to 164844757 18 - TSS region transcription start site region 27565
Tssr27566 2 164844764 to 164844775 11 - TSS region transcription start site region 27566
Tssr27567 2 164846618 to 164846628 10 - TSS region transcription start site region 27567
Tssr27568 2 164846644 to 164846664 20 - TSS region transcription start site region 27568
Tssr27569 2 164846766 to 164846850 84 - TSS region transcription start site region 27569
Tssr27570 2 164846859 to 164846875 16 - TSS region transcription start site region 27570
Tssr27571 2 164847787 to 164847799 12 - TSS region transcription start site region 27571
Tssr27572 2 164847857 to 164847872 15 - TSS region transcription start site region 27572
Tssr27573 2 164847893 to 164847905 12 - TSS region transcription start site region 27573
Tssr27574 2 164848005 to 164848016 11 - TSS region transcription start site region 27574
Tssr27575 2 164848083 to 164848111 28 - TSS region transcription start site region 27575
Tssr27576 2 164848532 to 164848538 6 - TSS region transcription start site region 27576
Tssr27577 2 164851537 to 164851603 66 - TSS region transcription start site region 27577
Tssr27578 2 164854399 to 164854424 25 - TSS region transcription start site region 27578
Tssr27579 2 164854973 to 164855061 88 - TSS region transcription start site region 27579
Tssr27580 2 164855735 to 164855746 11 - TSS region transcription start site region 27580
Cpgi12675 2 164856721 to 164858034 1313 CpG island CpG island 12675
Tssr27581 2 164856724 to 164856806 82 - TSS region transcription start site region 27581
Tssr27582 2 164856907 to 164856954 47 - TSS region transcription start site region 27582
Tssr27583 2 164856957 to 164857024 67 - TSS region transcription start site region 27583
Tssr27584 2 164857166 to 164857182 16 - TSS region transcription start site region 27584
Tssr27585 2 164857198 to 164857239 41 - TSS region transcription start site region 27585
Tssr27586 2 164857240 to 164857273 33 - TSS region transcription start site region 27586
Tssr27587 2 164857634 to 164857652 18 - TSS region transcription start site region 27587
Tssr27588 2 164857671 to 164857682 11 - TSS region transcription start site region 27588
Tssr21682 2 164857769 to 164857803 34 + TSS region transcription start site region 21682
Tssr27589 2 164857803 to 164857823 20 - TSS region transcription start site region 27589
Tssr27590 2 164858178 to 164858204 26 - TSS region transcription start site region 27590
Tssr27591 2 164859807 to 164859813 6 - TSS region transcription start site region 27591
D2Mit227 2 164869474 to 164869584 110 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 227
D2Mit342 2 164869485 to 164869576 91 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 342
4930445K14Rik 2 164878287 to 164883451 5164 - protein coding gene RIKEN cDNA 4930445K14 gene
Cpgi12676 2 164878731 to 164880313 1582 CpG island CpG island 12676
Tssr21683 2 164879358 to 164879398 40 + TSS region transcription start site region 21683
Pcif1 2 164879368 to 164891437 12069 + protein coding gene PDX1 C-terminal inhibiting factor 1
Tssr27592 2 164879735 to 164879804 69 - TSS region transcription start site region 27592
Tssr21684 2 164880016 to 164880039 23 + TSS region transcription start site region 21684
Tssr21685 2 164880045 to 164880061 16 + TSS region transcription start site region 21685
Gm46775 2 164887299 to 164891156 3857 - lncRNA gene predicted gene, 46775
Zfp335 2 164891892 to 164911750 19858 - protein coding gene zinc finger protein 335
Cpgi12677 2 164910494 to 164912365 1871 CpG island CpG island 12677
Tssr27593 2 164911175 to 164911210 35 - TSS region transcription start site region 27593
Tssr27594 2 164911218 to 164911239 21 - TSS region transcription start site region 27594
Tssr27595 2 164911258 to 164911299 41 - TSS region transcription start site region 27595
Zfp335os 2 164911354 to 164919953 8599 + antisense lncRNA gene zinc finger protein 335, opposite strand
Tssr21686 2 164911427 to 164911455 28 + TSS region transcription start site region 21686
Tssr27596 2 164911560 to 164911583 23 - TSS region transcription start site region 27596
Tssr27597 2 164911586 to 164911608 22 - TSS region transcription start site region 27597
2210414I22Rik 2 164911889 to 164912932 1043 unclassified gene RIKEN cDNA 2210414I22 gene
Cpgi12678 2 164938440 to 164938976 536 CpG island CpG island 12678
Tssr21687 2 164940742 to 164940765 23 + TSS region transcription start site region 21687
Mmp9 2 164940780 to 164955850 15070 + protein coding gene matrix metallopeptidase 9
Tssr21688 2 164947061 to 164947075 14 + TSS region transcription start site region 21688
Tssr21689 2 164947741 to 164947748 7 + TSS region transcription start site region 21689
D2Dcr116 2 164948060 to 164948171 111 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 116
D2Mit1000 2 164948062 to 164948198 136 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 1000
Tssr21690 2 164948231 to 164948245 14 + TSS region transcription start site region 21690
Cpgi12679 2 164949088 to 164950499 1411 CpG island CpG island 12679
Cpgi12680 2 164950785 to 164951241 456 CpG island CpG island 12680
Tssr21691 2 164951150 to 164951161 11 + TSS region transcription start site region 21691
Tssr21692 2 164951210 to 164951221 11 + TSS region transcription start site region 21692
Tssr21693 2 164952423 to 164952434 11 + TSS region transcription start site region 21693
Cpgi12681 2 164953114 to 164953661 547 CpG island CpG island 12681
Cpgi12682 2 164960682 to 164961468 786 CpG island CpG island 12682
Tssr21694 2 164960809 to 164960833 24 + TSS region transcription start site region 21694
Slc12a5 2 164960821 to 164999731 38910 + protein coding gene solute carrier family 12, member 5
Tssr21695 2 164960846 to 164960863 17 + TSS region transcription start site region 21695
Gm46776 2 164961064 to 164964371 3307 - lncRNA gene predicted gene, 46776
Cpgi12683 2 164967709 to 164969191 1482 CpG island CpG island 12683
Tssr21696 2 164968166 to 164968180 14 + TSS region transcription start site region 21696
Tssr21697 2 164968219 to 164968255 36 + TSS region transcription start site region 21697
Tssr21698 2 164968264 to 164968317 53 + TSS region transcription start site region 21698
Tssr21699 2 164968320 to 164968323 3 + TSS region transcription start site region 21699
Cpgi12684 2 164969265 to 164969630 365 CpG island CpG island 12684
Cpgi12685 2 164970641 to 164971515 874 CpG island CpG island 12685
Tssr21700 2 164995983 to 164995987 4 + TSS region transcription start site region 21700
Cpgi12686 2 164997080 to 164998311 1231 CpG island CpG island 12686
Ncoa5 2 165000357 to 165034867 34510 - protein coding gene nuclear receptor coactivator 5
Tssr27598 2 165004347 to 165004359 12 - TSS region transcription start site region 27598
Gm19133 2 165004892 to 165006988 2096 - pseudogene predicted gene, 19133
Cpgi12687 2 165033725 to 165035139 1414 CpG island CpG island 12687
Tssr27599 2 165034456 to 165034488 32 - TSS region transcription start site region 27599
Tssr27600 2 165034528 to 165034578 50 - TSS region transcription start site region 27600
Tssr27601 2 165034770 to 165034820 50 - TSS region transcription start site region 27601
Tssr27602 2 165034821 to 165034859 38 - TSS region transcription start site region 27602
Cpgi12688 2 165055599 to 165055761 162 CpG island CpG island 12688
Cd40 2 165055608 to 165071654 16046 + protein coding gene CD40 antigen
Tssr21701 2 165055625 to 165055661 36 + TSS region transcription start site region 21701
Tssr21702 2 165055668 to 165055690 22 + TSS region transcription start site region 21702
Tssr21703 2 165058259 to 165058270 11 + TSS region transcription start site region 21703
Tssr21704 2 165059291 to 165059304 13 + TSS region transcription start site region 21704
Tssr21705 2 165059922 to 165059931 9 + TSS region transcription start site region 21705
Tssr21706 2 165062311 to 165062320 9 + TSS region transcription start site region 21706
Tssr21707 2 165063557 to 165063569 12 + TSS region transcription start site region 21707
Tssr21708 2 165064136 to 165064163 27 + TSS region transcription start site region 21708
Tssr21709 2 165064194 to 165064205 11 + TSS region transcription start site region 21709
Tssr21710 2 165064928 to 165064939 11 + TSS region transcription start site region 21710
Tssr21711 2 165064991 to 165065002 11 + TSS region transcription start site region 21711
Tssr21712 2 165065008 to 165065025 17 + TSS region transcription start site region 21712
Tssr27603 2 165065365 to 165065384 19 - TSS region transcription start site region 27603
Tssr21713 2 165065701 to 165065719 18 + TSS region transcription start site region 21713
Tssr21714 2 165066659 to 165066684 25 + TSS region transcription start site region 21714
Tssr21715 2 165066705 to 165066718 13 + TSS region transcription start site region 21715
Tssr21716 2 165066759 to 165066768 9 + TSS region transcription start site region 21716
Tssr21717 2 165066846 to 165066861 15 + TSS region transcription start site region 21717
Tssr21718 2 165066892 to 165066908 16 + TSS region transcription start site region 21718
Tssr21719 2 165066983 to 165067002 19 + TSS region transcription start site region 21719
Tssr21720 2 165067186 to 165067195 9 + TSS region transcription start site region 21720
Tssr21721 2 165067229 to 165067240 11 + TSS region transcription start site region 21721
Tssr21722 2 165068099 to 165068105 6 + TSS region transcription start site region 21722
Tssr21723 2 165072463 to 165072466 3 + TSS region transcription start site region 21723