Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:164744518-164952708

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170 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Wfdc3 2 164731226 to 164745910 14684 - protein coding gene WAP four-disulfide core domain 3
Cpgi12667 2 164745577 to 164746664 1087 CpG island CpG island 12667
Tssr27527 2 164745896 to 164745914 18 - TSS region transcription start site region 27527
Tssr27528 2 164745916 to 164745940 24 - TSS region transcription start site region 27528
Tssr21635 2 164745979 to 164746025 46 + TSS region transcription start site region 21635
Dnttip1 2 164746015 to 164768220 22205 + protein coding gene deoxynucleotidyltransferase, terminal, interacting protein 1
Tssr21636 2 164746028 to 164746039 11 + TSS region transcription start site region 21636
Gm11457 2 164750082 to 164762877 12795 - antisense lncRNA gene predicted gene 11457
Gm22596 2 164761659 to 164761974 315 + unclassified non-coding RNA gene predicted gene, 22596
Cpgi12668 2 164769399 to 164770661 1262 CpG island CpG island 12668
Tssr27529 2 164769642 to 164769655 13 - TSS region transcription start site region 27529
Tssr21637 2 164769892 to 164769903 11 + TSS region transcription start site region 21637
Tssr21638 2 164769921 to 164769954 33 + TSS region transcription start site region 21638
Ube2c 2 164769929 to 164772902 2973 + protein coding gene ubiquitin-conjugating enzyme E2C
Tssr21639 2 164769963 to 164769974 11 + TSS region transcription start site region 21639
Tssr21640 2 164771301 to 164771324 23 + TSS region transcription start site region 21640
Tssr21641 2 164771686 to 164771697 11 + TSS region transcription start site region 21641
Tssr21642 2 164771862 to 164771879 17 + TSS region transcription start site region 21642
Tssr21643 2 164771894 to 164771903 9 + TSS region transcription start site region 21643
Cpgi12669 2 164776904 to 164777396 492 CpG island CpG island 12669
Tnnc2 2 164777161 to 164779734 2573 - protein coding gene troponin C2, fast
Tssr21644 2 164777485 to 164777510 25 + TSS region transcription start site region 21644
Tssr21645 2 164777519 to 164777534 15 + TSS region transcription start site region 21645
Tssr21646 2 164777557 to 164777583 26 + TSS region transcription start site region 21646
Tssr21647 2 164777742 to 164777781 39 + TSS region transcription start site region 21647
Tssr27530 2 164777807 to 164777819 12 - TSS region transcription start site region 27530
Tssr760 2 164777821 to 164777849 28 - TSS region transcription start site region 760
Tssr21648 2 164777942 to 164777965 23 + TSS region transcription start site region 21648
Tssr27531 2 164777973 to 164777984 11 - TSS region transcription start site region 27531
Tssr27532 2 164777991 to 164778015 24 - TSS region transcription start site region 27532
Tssr27533 2 164778035 to 164778053 18 - TSS region transcription start site region 27533
Tssr27534 2 164778076 to 164778087 11 - TSS region transcription start site region 27534
Tssr27535 2 164778206 to 164778228 22 - TSS region transcription start site region 27535
Tssr27536 2 164779721 to 164779740 19 - TSS region transcription start site region 27536
Cpgi12670 2 164785483 to 164786601 1118 CpG island CpG island 12670
Snx21 2 164785823 to 164793816 7993 + protein coding gene sorting nexin family member 21
Tssr21649 2 164785957 to 164785989 32 + TSS region transcription start site region 21649
Tssr21650 2 164785994 to 164786071 77 + TSS region transcription start site region 21650
Cpgi12671 2 164791728 to 164791961 233 CpG island CpG island 12671
Acot8 2 164792765 to 164804882 12117 - protein coding gene acyl-CoA thioesterase 8
Tssr27537 2 164803627 to 164803631 4 - TSS region transcription start site region 27537
Cpgi12672 2 164804544 to 164805721 1177 CpG island CpG island 12672
Tssr27538 2 164804686 to 164804733 47 - TSS region transcription start site region 27538
Tssr27539 2 164804824 to 164804837 13 - TSS region transcription start site region 27539
Tssr27540 2 164804848 to 164804863 15 - TSS region transcription start site region 27540
Tssr27541 2 164804876 to 164804894 18 - TSS region transcription start site region 27541
Tssr21651 2 164805082 to 164805109 27 + TSS region transcription start site region 21651
Zswim3 2 164805114 to 164822127 17013 + protein coding gene zinc finger SWIM-type containing 3
Tssr27542 2 164805194 to 164805203 9 - TSS region transcription start site region 27542
Tssr21652 2 164805237 to 164805270 33 + TSS region transcription start site region 21652
Tssr27543 2 164821095 to 164821109 14 - TSS region transcription start site region 27543
Zswim1 2 164822686 to 164826867 4181 + protein coding gene zinc finger SWIM-type containing 1
Cpgi12673 2 164822780 to 164823294 514 CpG island CpG island 12673
Tssr21653 2 164822961 to 164822975 14 + TSS region transcription start site region 21653
Tssr21654 2 164823001 to 164823040 39 + TSS region transcription start site region 21654
Tssr21655 2 164823059 to 164823072 13 + TSS region transcription start site region 21655
Spata25 2 164827382 to 164828534 1152 - protein coding gene spermatogenesis associated 25
Tssr27544 2 164828479 to 164828499 20 - TSS region transcription start site region 27544
Tssr27545 2 164828529 to 164828537 8 - TSS region transcription start site region 27545
Neurl2 2 164830732 to 164833456 2724 - protein coding gene neuralized E3 ubiquitin protein ligase 2
Cpgi12674 2 164832712 to 164834417 1705 CpG island CpG island 12674
Tssr21656 2 164832862 to 164832878 16 + TSS region transcription start site region 21656
Ctsa 2 164832873 to 164841032 8159 + protein coding gene cathepsin A
Tssr21657 2 164832881 to 164832935 54 + TSS region transcription start site region 21657
Tssr21658 2 164832959 to 164832970 11 + TSS region transcription start site region 21658
Tssr27546 2 164833438 to 164833480 42 - TSS region transcription start site region 27546
Tssr21659 2 164833766 to 164833775 9 + TSS region transcription start site region 21659
Tssr21660 2 164833781 to 164833812 31 + TSS region transcription start site region 21660
Tssr21661 2 164833841 to 164833852 11 + TSS region transcription start site region 21661
Tssr21662 2 164834015 to 164834048 33 + TSS region transcription start site region 21662
Tssr21663 2 164834076 to 164834097 21 + TSS region transcription start site region 21663
Tssr21664 2 164834107 to 164834138 31 + TSS region transcription start site region 21664
Tssr21665 2 164834863 to 164834884 21 + TSS region transcription start site region 21665
Tssr21666 2 164835174 to 164835199 25 + TSS region transcription start site region 21666
Tssr21667 2 164835227 to 164835280 53 + TSS region transcription start site region 21667
Tssr21668 2 164835629 to 164835651 22 + TSS region transcription start site region 21668
Tssr21669 2 164835681 to 164835692 11 + TSS region transcription start site region 21669
Tssr21670 2 164836411 to 164836458 47 + TSS region transcription start site region 21670
Tssr21671 2 164837000 to 164837032 32 + TSS region transcription start site region 21671
Tssr21672 2 164837201 to 164837221 20 + TSS region transcription start site region 21672
Tssr21673 2 164837368 to 164837404 36 + TSS region transcription start site region 21673
Tssr27547 2 164837403 to 164837450 47 - TSS region transcription start site region 27547
Tssr27548 2 164837453 to 164837477 24 - TSS region transcription start site region 27548
Tssr21674 2 164838079 to 164838112 33 + TSS region transcription start site region 21674
Tssr21675 2 164839220 to 164839261 41 + TSS region transcription start site region 21675
Tssr21676 2 164839299 to 164839319 20 + TSS region transcription start site region 21676
Tssr21677 2 164839513 to 164839546 33 + TSS region transcription start site region 21677
Pltp 2 164839518 to 164857708 18190 - protein coding gene phospholipid transfer protein
Tssr21678 2 164839576 to 164839600 24 + TSS region transcription start site region 21678
Tssr21679 2 164839682 to 164839712 30 + TSS region transcription start site region 21679
Tssr27549 2 164839697 to 164839706 9 - TSS region transcription start site region 27549
Tssr21680 2 164839714 to 164839774 60 + TSS region transcription start site region 21680
Tssr27550 2 164839721 to 164839752 31 - TSS region transcription start site region 27550
Tssr27551 2 164839773 to 164839782 9 - TSS region transcription start site region 27551
Tssr27552 2 164839801 to 164839815 14 - TSS region transcription start site region 27552
Tssr27553 2 164839820 to 164839831 11 - TSS region transcription start site region 27553
Tssr27554 2 164840142 to 164840156 14 - TSS region transcription start site region 27554
Tssr27555 2 164840161 to 164840192 31 - TSS region transcription start site region 27555
Tssr27556 2 164840360 to 164840371 11 - TSS region transcription start site region 27556
Tssr27557 2 164840375 to 164840394 19 - TSS region transcription start site region 27557
Tssr27558 2 164840521 to 164840557 36 - TSS region transcription start site region 27558
Tssr21681 2 164841538 to 164841557 19 + TSS region transcription start site region 21681
Tssr27559 2 164844461 to 164844474 13 - TSS region transcription start site region 27559
Tssr27560 2 164844480 to 164844504 24 - TSS region transcription start site region 27560
Tssr27561 2 164844627 to 164844663 36 - TSS region transcription start site region 27561
Tssr27562 2 164844671 to 164844689 18 - TSS region transcription start site region 27562
Tssr27563 2 164844697 to 164844706 9 - TSS region transcription start site region 27563
Tssr27564 2 164844710 to 164844730 20 - TSS region transcription start site region 27564
Tssr27565 2 164844739 to 164844757 18 - TSS region transcription start site region 27565
Tssr27566 2 164844764 to 164844775 11 - TSS region transcription start site region 27566
Tssr27567 2 164846618 to 164846628 10 - TSS region transcription start site region 27567
Tssr27568 2 164846644 to 164846664 20 - TSS region transcription start site region 27568
Tssr27569 2 164846766 to 164846850 84 - TSS region transcription start site region 27569
Tssr27570 2 164846859 to 164846875 16 - TSS region transcription start site region 27570
Tssr27571 2 164847787 to 164847799 12 - TSS region transcription start site region 27571
Tssr27572 2 164847857 to 164847872 15 - TSS region transcription start site region 27572
Tssr27573 2 164847893 to 164847905 12 - TSS region transcription start site region 27573
Tssr27574 2 164848005 to 164848016 11 - TSS region transcription start site region 27574
Tssr27575 2 164848083 to 164848111 28 - TSS region transcription start site region 27575
Tssr27576 2 164848532 to 164848538 6 - TSS region transcription start site region 27576
Tssr27577 2 164851537 to 164851603 66 - TSS region transcription start site region 27577
Tssr27578 2 164854399 to 164854424 25 - TSS region transcription start site region 27578
Tssr27579 2 164854973 to 164855061 88 - TSS region transcription start site region 27579
Tssr27580 2 164855735 to 164855746 11 - TSS region transcription start site region 27580
Cpgi12675 2 164856721 to 164858034 1313 CpG island CpG island 12675
Tssr27581 2 164856724 to 164856806 82 - TSS region transcription start site region 27581
Tssr27582 2 164856907 to 164856954 47 - TSS region transcription start site region 27582
Tssr27583 2 164856957 to 164857024 67 - TSS region transcription start site region 27583
Tssr27584 2 164857166 to 164857182 16 - TSS region transcription start site region 27584
Tssr27585 2 164857198 to 164857239 41 - TSS region transcription start site region 27585
Tssr27586 2 164857240 to 164857273 33 - TSS region transcription start site region 27586
Tssr27587 2 164857634 to 164857652 18 - TSS region transcription start site region 27587
Tssr27588 2 164857671 to 164857682 11 - TSS region transcription start site region 27588
Tssr21682 2 164857769 to 164857803 34 + TSS region transcription start site region 21682
Tssr27589 2 164857803 to 164857823 20 - TSS region transcription start site region 27589
Tssr27590 2 164858178 to 164858204 26 - TSS region transcription start site region 27590
Tssr27591 2 164859807 to 164859813 6 - TSS region transcription start site region 27591
D2Mit227 2 164869474 to 164869584 110 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 227
D2Mit342 2 164869485 to 164869576 91 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 342
4930445K14Rik 2 164878287 to 164883451 5164 - protein coding gene RIKEN cDNA 4930445K14 gene
Cpgi12676 2 164878731 to 164880313 1582 CpG island CpG island 12676
Tssr21683 2 164879358 to 164879398 40 + TSS region transcription start site region 21683
Pcif1 2 164879368 to 164891437 12069 + protein coding gene PDX1 C-terminal inhibiting factor 1
Tssr27592 2 164879735 to 164879804 69 - TSS region transcription start site region 27592
Tssr21684 2 164880016 to 164880039 23 + TSS region transcription start site region 21684
Tssr21685 2 164880045 to 164880061 16 + TSS region transcription start site region 21685
Gm46775 2 164887299 to 164891156 3857 - lncRNA gene predicted gene, 46775
Zfp335 2 164891892 to 164911750 19858 - protein coding gene zinc finger protein 335
Cpgi12677 2 164910494 to 164912365 1871 CpG island CpG island 12677
Tssr27593 2 164911175 to 164911210 35 - TSS region transcription start site region 27593
Tssr27594 2 164911218 to 164911239 21 - TSS region transcription start site region 27594
Tssr27595 2 164911258 to 164911299 41 - TSS region transcription start site region 27595
Zfp335os 2 164911354 to 164919953 8599 + antisense lncRNA gene zinc finger protein 335, opposite strand
Tssr21686 2 164911427 to 164911455 28 + TSS region transcription start site region 21686
Tssr27596 2 164911560 to 164911583 23 - TSS region transcription start site region 27596
Tssr27597 2 164911586 to 164911608 22 - TSS region transcription start site region 27597
2210414I22Rik 2 164911889 to 164912932 1043 unclassified gene RIKEN cDNA 2210414I22 gene
Cpgi12678 2 164938440 to 164938976 536 CpG island CpG island 12678
Tssr21687 2 164940742 to 164940765 23 + TSS region transcription start site region 21687
Mmp9 2 164940780 to 164955850 15070 + protein coding gene matrix metallopeptidase 9
Tssr21688 2 164947061 to 164947075 14 + TSS region transcription start site region 21688
Tssr21689 2 164947741 to 164947748 7 + TSS region transcription start site region 21689
D2Dcr116 2 164948060 to 164948171 111 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 116
D2Mit1000 2 164948062 to 164948198 136 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 1000
Tssr21690 2 164948231 to 164948245 14 + TSS region transcription start site region 21690
Cpgi12679 2 164949088 to 164950499 1411 CpG island CpG island 12679
Cpgi12680 2 164950785 to 164951241 456 CpG island CpG island 12680
Tssr21691 2 164951150 to 164951161 11 + TSS region transcription start site region 21691
Tssr21692 2 164951210 to 164951221 11 + TSS region transcription start site region 21692
Tssr21693 2 164952423 to 164952434 11 + TSS region transcription start site region 21693