Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:164428671-164788695

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173 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sdc4 2 164424247 to 164443188 18941 - protein coding gene syndecan 4
Tssr27476 2 164428921 to 164428977 56 - TSS region transcription start site region 27476
Tssr27477 2 164431219 to 164431230 11 - TSS region transcription start site region 27477
Tssr27478 2 164431245 to 164431256 11 - TSS region transcription start site region 27478
Tssr27479 2 164431261 to 164431273 12 - TSS region transcription start site region 27479
Tssr27480 2 164431289 to 164431308 19 - TSS region transcription start site region 27480
Tssr27481 2 164432208 to 164432221 13 - TSS region transcription start site region 27481
Cpgi12660 2 164442712 to 164443486 774 CpG island CpG island 12660
Tssr27482 2 164443177 to 164443194 17 - TSS region transcription start site region 27482
Tssr27483 2 164443296 to 164443341 45 - TSS region transcription start site region 27483
Tssr21589 2 164443370 to 164443405 35 + TSS region transcription start site region 21589
Tssr21590 2 164443407 to 164443418 11 + TSS region transcription start site region 21590
Tssr27484 2 164443913 to 164443928 15 - TSS region transcription start site region 27484
Tssr27485 2 164444074 to 164444085 11 - TSS region transcription start site region 27485
Tssr21591 2 164445422 to 164445433 11 + TSS region transcription start site region 21591
Tssr21592 2 164456936 to 164456988 52 + TSS region transcription start site region 21592
Sys1 2 164456981 to 164479637 22656 + protein coding gene SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)
Gm14302 2 164459896 to 164460955 1059 - antisense lncRNA gene predicted gene 14302
Cpgi12661 2 164460793 to 164461762 969 CpG island CpG island 12661
Tssr21593 2 164460945 to 164461018 73 + TSS region transcription start site region 21593
Gm20458 2 164460967 to 164490760 29793 + protein coding gene predicted gene 20458
Tssr21594 2 164461019 to 164461058 39 + TSS region transcription start site region 21594
Tssr21595 2 164461063 to 164461074 11 + TSS region transcription start site region 21595
Tssr21596 2 164461081 to 164461091 10 + TSS region transcription start site region 21596
Tssr21597 2 164461231 to 164461284 53 + TSS region transcription start site region 21597
Tssr27486 2 164461575 to 164461586 11 - TSS region transcription start site region 27486
Trp53tg5 2 164470301 to 164473724 3423 - protein coding gene transformation related protein 53 target 5
Tssr27487 2 164473701 to 164473712 11 - TSS region transcription start site region 27487
Tssr27488 2 164473714 to 164473730 16 - TSS region transcription start site region 27488
Tssr27489 2 164478372 to 164478396 24 - TSS region transcription start site region 27489
Gm10725 2 164485529 to 164486870 1341 - protein coding gene predicted gene 10725
Cpgi12662 2 164485747 to 164487410 1663 CpG island CpG island 12662
Tssr21598 2 164486067 to 164486095 28 + TSS region transcription start site region 21598
Dbndd2 2 164486106 to 164493319 7213 + protein coding gene dysbindin (dystrobrevin binding protein 1) domain containing 2
Tssr21599 2 164486519 to 164486655 136 + TSS region transcription start site region 21599
Tssr21600 2 164486856 to 164486898 42 + TSS region transcription start site region 21600
Tssr21601 2 164488103 to 164488127 24 + TSS region transcription start site region 21601
Tssr21602 2 164488197 to 164488200 3 + TSS region transcription start site region 21602
Tssr21603 2 164492032 to 164492034 2 + TSS region transcription start site region 21603
Cpgi12663 2 164497174 to 164498011 837 CpG island CpG island 12663
Tssr27490 2 164497444 to 164497475 31 - TSS region transcription start site region 27490
Tssr21604 2 164497518 to 164497560 42 + TSS region transcription start site region 21604
Pigt 2 164497520 to 164508301 10781 + protein coding gene phosphatidylinositol glycan anchor biosynthesis, class T
Tssr21605 2 164497961 to 164497984 23 + TSS region transcription start site region 21605
Tssr21606 2 164501502 to 164501516 14 + TSS region transcription start site region 21606
Tssr21607 2 164502577 to 164502596 19 + TSS region transcription start site region 21607
Tssr21608 2 164502620 to 164502636 16 + TSS region transcription start site region 21608
Cpgi12664 2 164507311 to 164507512 201 CpG island CpG island 12664
Tssr21609 2 164507392 to 164507433 41 + TSS region transcription start site region 21609
Tssr21610 2 164508248 to 164508258 10 + TSS region transcription start site region 21610
Tssr27491 2 164512171 to 164512182 11 - TSS region transcription start site region 27491
Tssr27492 2 164512204 to 164512218 14 - TSS region transcription start site region 27492
2310007H11Rik 2 164522216 to 164523756 1540 unclassified gene RIKEN cDNA 2310007H11 gene
Tssr21611 2 164523663 to 164523684 21 + TSS region transcription start site region 21611
Tssr756 2 164523690 to 164523708 18 + TSS region transcription start site region 756
Gm36090 2 164533247 to 164549375 16128 - lncRNA gene predicted gene, 36090
Tssr27493 2 164549320 to 164549335 15 - TSS region transcription start site region 27493
Tssr27494 2 164549339 to 164549350 11 - TSS region transcription start site region 27494
Gm14317 2 164550530 to 164559730 9200 + lincRNA gene predicted gene 14317
Tssr21612 2 164557733 to 164557747 14 + TSS region transcription start site region 21612
Wfdc2 2 164562561 to 164568510 5949 + protein coding gene WAP four-disulfide core domain 2
Tssr21613 2 164562707 to 164562721 14 + TSS region transcription start site region 21613
Tssr21614 2 164563316 to 164563340 24 + TSS region transcription start site region 21614
Cpgi12665 2 164563327 to 164563818 491 CpG island CpG island 12665
Tssr21615 2 164563414 to 164563430 16 + TSS region transcription start site region 21615
Tssr21616 2 164564104 to 164564115 11 + TSS region transcription start site region 21616
Tssr21617 2 164564153 to 164564173 20 + TSS region transcription start site region 21617
Tssr27495 2 164564178 to 164564215 37 - TSS region transcription start site region 27495
Tssr21618 2 164568352 to 164568405 53 + TSS region transcription start site region 21618
Tssr27496 2 164568492 to 164568512 20 - TSS region transcription start site region 27496
Spint3 2 164569695 to 164573456 3761 - protein coding gene serine peptidase inhibitor, Kunitz type, 3
Tssr27497 2 164573300 to 164573313 13 - TSS region transcription start site region 27497
Tssr27498 2 164573330 to 164573332 2 - TSS region transcription start site region 27498
Tssr27499 2 164573416 to 164573445 29 - TSS region transcription start site region 27499
Wfdc6a 2 164579519 to 164585447 5928 - protein coding gene WAP four-disulfide core domain 6A
Tssr27500 2 164585455 to 164585458 3 - TSS region transcription start site region 27500
Eppin 2 164588343 to 164593571 5228 - protein coding gene epididymal peptidase inhibitor
Tssr27501 2 164589568 to 164589583 15 - TSS region transcription start site region 27501
Cpgi12666 2 164589618 to 164589811 193 CpG island CpG island 12666
Tssr27502 2 164593514 to 164593526 12 - TSS region transcription start site region 27502
Tssr27503 2 164593533 to 164593537 4 - TSS region transcription start site region 27503
Tssr27504 2 164593538 to 164593577 39 - TSS region transcription start site region 27504
Tssr27505 2 164593588 to 164593603 15 - TSS region transcription start site region 27505
Tssr27506 2 164593606 to 164593615 9 - TSS region transcription start site region 27506
Wfdc8 2 164596458 to 164613626 17168 - protein coding gene WAP four-disulfide core domain 8
Gm25512 2 164601936 to 164602042 106 + snRNA gene predicted gene, 25512
Tssr27507 2 164608657 to 164608662 5 - TSS region transcription start site region 27507
Tssr27508 2 164608671 to 164608695 24 - TSS region transcription start site region 27508
Tssr27509 2 164608846 to 164608853 7 - TSS region transcription start site region 27509
Tssr27510 2 164608901 to 164608921 20 - TSS region transcription start site region 27510
Tssr757 2 164608930 to 164608933 3 - TSS region transcription start site region 757
Tssr21619 2 164613519 to 164613529 10 + TSS region transcription start site region 21619
Wfdc6b 2 164613578 to 164618213 4635 + protein coding gene WAP four-disulfide core domain 6B
Tssr27511 2 164613600 to 164613630 30 - TSS region transcription start site region 27511
Tssr758 2 164613693 to 164613703 10 + TSS region transcription start site region 758
Tssr759 2 164613730 to 164613738 8 + TSS region transcription start site region 759
Gm24473 2 164621922 to 164622052 130 + snoRNA gene predicted gene, 24473
Wfdc16 2 164634707 to 164638796 4089 - protein coding gene WAP four-disulfide core domain 16
Tssr27512 2 164638597 to 164638609 12 - TSS region transcription start site region 27512
Tssr27513 2 164638749 to 164638758 9 - TSS region transcription start site region 27513
Tssr27514 2 164638789 to 164638810 21 - TSS region transcription start site region 27514
Tssr27515 2 164638812 to 164638833 21 - TSS region transcription start site region 27515
Gm11456 2 164642945 to 164643200 255 - pseudogene predicted gene 11456
Tssr21620 2 164643863 to 164643865 2 + TSS region transcription start site region 21620
Tssr21621 2 164643951 to 164643957 6 + TSS region transcription start site region 21621
Wfdc9 2 164649631 to 164656583 6952 - protein coding gene WAP four-disulfide core domain 9
Tssr21622 2 164653826 to 164653836 10 + TSS region transcription start site region 21622
Tssr21623 2 164653840 to 164653850 10 + TSS region transcription start site region 21623
Tssr21624 2 164653895 to 164653900 5 + TSS region transcription start site region 21624
Tssr21625 2 164653977 to 164653982 5 + TSS region transcription start site region 21625
Tssr27516 2 164654927 to 164654956 29 - TSS region transcription start site region 27516
Tssr27517 2 164654965 to 164654971 6 - TSS region transcription start site region 27517
Tssr21626 2 164656043 to 164656113 70 + TSS region transcription start site region 21626
Wfdc10 2 164656046 to 164657368 1322 + protein coding gene WAP four-disulfide core domain 10
Tssr27518 2 164657187 to 164657197 10 - TSS region transcription start site region 27518
Wfdc11 2 164662894 to 164674087 11193 - protein coding gene WAP four-disulfide core domain 11
Tssr27519 2 164674072 to 164674080 8 - TSS region transcription start site region 27519
Tssr27520 2 164674081 to 164674095 14 - TSS region transcription start site region 27520
Tssr27521 2 164674113 to 164674114 1 - TSS region transcription start site region 27521
Tssr21627 2 164685051 to 164685056 5 + TSS region transcription start site region 21627
Tssr21628 2 164685080 to 164685152 72 + TSS region transcription start site region 21628
Wfdc13 2 164685107 to 164687706 2599 + protein coding gene WAP four-disulfide core domain 13
Tssr21629 2 164687328 to 164687335 7 + TSS region transcription start site region 21629
Tssr21630 2 164687338 to 164687342 4 + TSS region transcription start site region 21630
Spint4 2 164698501 to 164702448 3947 + protein coding gene serine protease inhibitor, Kunitz type 4
Tssr21631 2 164698524 to 164698539 15 + TSS region transcription start site region 21631
Tssr21632 2 164715269 to 164715284 15 + TSS region transcription start site region 21632
Tssr21633 2 164715299 to 164715310 11 + TSS region transcription start site region 21633
Spint5 2 164715305 to 164718068 2763 + protein coding gene serine protease inhibitor, Kunitz type 5
Tssr21634 2 164715321 to 164715333 12 + TSS region transcription start site region 21634
Wfdc3 2 164731226 to 164745910 14684 - protein coding gene WAP four-disulfide core domain 3
Tssr27522 2 164743099 to 164743108 9 - TSS region transcription start site region 27522
Tssr27523 2 164743113 to 164743124 11 - TSS region transcription start site region 27523
Tssr27524 2 164743132 to 164743147 15 - TSS region transcription start site region 27524
Tssr27525 2 164743155 to 164743181 26 - TSS region transcription start site region 27525
Tssr27526 2 164743182 to 164743211 29 - TSS region transcription start site region 27526
Cpgi12667 2 164745577 to 164746664 1087 CpG island CpG island 12667
Tssr27527 2 164745896 to 164745914 18 - TSS region transcription start site region 27527
Tssr27528 2 164745916 to 164745940 24 - TSS region transcription start site region 27528
Tssr21635 2 164745979 to 164746025 46 + TSS region transcription start site region 21635
Dnttip1 2 164746015 to 164768220 22205 + protein coding gene deoxynucleotidyltransferase, terminal, interacting protein 1
Tssr21636 2 164746028 to 164746039 11 + TSS region transcription start site region 21636
Gm11457 2 164750082 to 164762877 12795 - antisense lncRNA gene predicted gene 11457
Gm22596 2 164761659 to 164761974 315 + unclassified non-coding RNA gene predicted gene, 22596
Cpgi12668 2 164769399 to 164770661 1262 CpG island CpG island 12668
Tssr27529 2 164769642 to 164769655 13 - TSS region transcription start site region 27529
Tssr21637 2 164769892 to 164769903 11 + TSS region transcription start site region 21637
Tssr21638 2 164769921 to 164769954 33 + TSS region transcription start site region 21638
Ube2c 2 164769929 to 164772902 2973 + protein coding gene ubiquitin-conjugating enzyme E2C
Tssr21639 2 164769963 to 164769974 11 + TSS region transcription start site region 21639
Tssr21640 2 164771301 to 164771324 23 + TSS region transcription start site region 21640
Tssr21641 2 164771686 to 164771697 11 + TSS region transcription start site region 21641
Tssr21642 2 164771862 to 164771879 17 + TSS region transcription start site region 21642
Tssr21643 2 164771894 to 164771903 9 + TSS region transcription start site region 21643
Cpgi12669 2 164776904 to 164777396 492 CpG island CpG island 12669
Tnnc2 2 164777161 to 164779734 2573 - protein coding gene troponin C2, fast
Tssr21644 2 164777485 to 164777510 25 + TSS region transcription start site region 21644
Tssr21645 2 164777519 to 164777534 15 + TSS region transcription start site region 21645
Tssr21646 2 164777557 to 164777583 26 + TSS region transcription start site region 21646
Tssr21647 2 164777742 to 164777781 39 + TSS region transcription start site region 21647
Tssr27530 2 164777807 to 164777819 12 - TSS region transcription start site region 27530
Tssr760 2 164777821 to 164777849 28 - TSS region transcription start site region 760
Tssr21648 2 164777942 to 164777965 23 + TSS region transcription start site region 21648
Tssr27531 2 164777973 to 164777984 11 - TSS region transcription start site region 27531
Tssr27532 2 164777991 to 164778015 24 - TSS region transcription start site region 27532
Tssr27533 2 164778035 to 164778053 18 - TSS region transcription start site region 27533
Tssr27534 2 164778076 to 164778087 11 - TSS region transcription start site region 27534
Tssr27535 2 164778206 to 164778228 22 - TSS region transcription start site region 27535
Tssr27536 2 164779721 to 164779740 19 - TSS region transcription start site region 27536
Cpgi12670 2 164785483 to 164786601 1118 CpG island CpG island 12670
Snx21 2 164785823 to 164793816 7993 + protein coding gene sorting nexin family member 21
Tssr21649 2 164785957 to 164785989 32 + TSS region transcription start site region 21649
Tssr21650 2 164785994 to 164786071 77 + TSS region transcription start site region 21650