Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:164397216-164648756

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150 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Matn4 2 164389393 to 164405160 15767 - protein coding gene matrilin 4
Cpgi12653 2 164397146 to 164397531 385 CpG island CpG island 12653
Cpgi12654 2 164398005 to 164398326 321 CpG island CpG island 12654
Cpgi12655 2 164400087 to 164401301 1214 CpG island CpG island 12655
Cpgi12656 2 164403063 to 164403271 208 CpG island CpG island 12656
Rbpjl 2 164403194 to 164415448 12254 + protein coding gene recombination signal binding protein for immunoglobulin kappa J region-like
Tssr21578 2 164403202 to 164403219 17 + TSS region transcription start site region 21578
Cpgi12657 2 164404328 to 164404998 670 CpG island CpG island 12657
Tssr21579 2 164404370 to 164404400 30 + TSS region transcription start site region 21579
Tssr27451 2 164404606 to 164404621 15 - TSS region transcription start site region 27451
Tssr27452 2 164404812 to 164404824 12 - TSS region transcription start site region 27452
Tssr27453 2 164404825 to 164404857 32 - TSS region transcription start site region 27453
Tssr21580 2 164405264 to 164405297 33 + TSS region transcription start site region 21580
Cpgi12658 2 164407842 to 164408321 479 CpG island CpG island 12658
Cpgi12659 2 164414025 to 164414810 785 CpG island CpG island 12659
Sdc4 2 164424247 to 164443188 18941 - protein coding gene syndecan 4
Tssr27454 2 164424284 to 164424287 3 - TSS region transcription start site region 27454
Tssr27455 2 164425124 to 164425140 16 - TSS region transcription start site region 27455
Tssr27456 2 164425176 to 164425215 39 - TSS region transcription start site region 27456
Tssr21581 2 164425227 to 164425251 24 + TSS region transcription start site region 21581
Tssr27457 2 164425255 to 164425266 11 - TSS region transcription start site region 27457
Tssr27458 2 164425300 to 164425318 18 - TSS region transcription start site region 27458
Tssr27459 2 164425338 to 164425360 22 - TSS region transcription start site region 27459
Tssr27460 2 164425367 to 164425380 13 - TSS region transcription start site region 27460
Tssr21582 2 164425405 to 164425428 23 + TSS region transcription start site region 21582
Tssr27461 2 164425442 to 164425465 23 - TSS region transcription start site region 27461
Tssr27462 2 164425519 to 164425532 13 - TSS region transcription start site region 27462
Tssr27463 2 164425562 to 164425584 22 - TSS region transcription start site region 27463
Tssr27464 2 164425605 to 164425616 11 - TSS region transcription start site region 27464
Tssr27465 2 164425653 to 164425683 30 - TSS region transcription start site region 27465
Tssr21583 2 164425727 to 164425761 34 + TSS region transcription start site region 21583
Tssr27466 2 164425768 to 164425779 11 - TSS region transcription start site region 27466
Tssr21584 2 164425771 to 164425794 23 + TSS region transcription start site region 21584
Tssr21585 2 164425807 to 164425846 39 + TSS region transcription start site region 21585
Tssr27467 2 164425812 to 164425828 16 - TSS region transcription start site region 27467
Tssr27468 2 164425860 to 164425874 14 - TSS region transcription start site region 27468
Tssr21586 2 164425878 to 164425915 37 + TSS region transcription start site region 21586
Tssr21587 2 164425967 to 164426011 44 + TSS region transcription start site region 21587
Tssr27469 2 164425975 to 164425986 11 - TSS region transcription start site region 27469
Tssr27470 2 164425991 to 164426046 55 - TSS region transcription start site region 27470
Tssr27471 2 164426073 to 164426098 25 - TSS region transcription start site region 27471
Tssr21588 2 164426115 to 164426160 45 + TSS region transcription start site region 21588
Tssr27472 2 164426146 to 164426161 15 - TSS region transcription start site region 27472
Tssr27473 2 164426187 to 164426204 17 - TSS region transcription start site region 27473
Tssr27474 2 164426209 to 164426229 20 - TSS region transcription start site region 27474
Tssr27475 2 164426236 to 164426249 13 - TSS region transcription start site region 27475
Tssr27476 2 164428921 to 164428977 56 - TSS region transcription start site region 27476
Tssr27477 2 164431219 to 164431230 11 - TSS region transcription start site region 27477
Tssr27478 2 164431245 to 164431256 11 - TSS region transcription start site region 27478
Tssr27479 2 164431261 to 164431273 12 - TSS region transcription start site region 27479
Tssr27480 2 164431289 to 164431308 19 - TSS region transcription start site region 27480
Tssr27481 2 164432208 to 164432221 13 - TSS region transcription start site region 27481
Cpgi12660 2 164442712 to 164443486 774 CpG island CpG island 12660
Tssr27482 2 164443177 to 164443194 17 - TSS region transcription start site region 27482
Tssr27483 2 164443296 to 164443341 45 - TSS region transcription start site region 27483
Tssr21589 2 164443370 to 164443405 35 + TSS region transcription start site region 21589
Tssr21590 2 164443407 to 164443418 11 + TSS region transcription start site region 21590
Tssr27484 2 164443913 to 164443928 15 - TSS region transcription start site region 27484
Tssr27485 2 164444074 to 164444085 11 - TSS region transcription start site region 27485
Tssr21591 2 164445422 to 164445433 11 + TSS region transcription start site region 21591
Tssr21592 2 164456936 to 164456988 52 + TSS region transcription start site region 21592
Sys1 2 164456981 to 164479637 22656 + protein coding gene SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)
Gm14302 2 164459896 to 164460955 1059 - antisense lncRNA gene predicted gene 14302
Cpgi12661 2 164460793 to 164461762 969 CpG island CpG island 12661
Tssr21593 2 164460945 to 164461018 73 + TSS region transcription start site region 21593
Gm20458 2 164460967 to 164490760 29793 + protein coding gene predicted gene 20458
Tssr21594 2 164461019 to 164461058 39 + TSS region transcription start site region 21594
Tssr21595 2 164461063 to 164461074 11 + TSS region transcription start site region 21595
Tssr21596 2 164461081 to 164461091 10 + TSS region transcription start site region 21596
Tssr21597 2 164461231 to 164461284 53 + TSS region transcription start site region 21597
Tssr27486 2 164461575 to 164461586 11 - TSS region transcription start site region 27486
Trp53tg5 2 164470301 to 164473724 3423 - protein coding gene transformation related protein 53 target 5
Tssr27487 2 164473701 to 164473712 11 - TSS region transcription start site region 27487
Tssr27488 2 164473714 to 164473730 16 - TSS region transcription start site region 27488
Tssr27489 2 164478372 to 164478396 24 - TSS region transcription start site region 27489
Gm10725 2 164485529 to 164486870 1341 - protein coding gene predicted gene 10725
Cpgi12662 2 164485747 to 164487410 1663 CpG island CpG island 12662
Tssr21598 2 164486067 to 164486095 28 + TSS region transcription start site region 21598
Dbndd2 2 164486106 to 164493319 7213 + protein coding gene dysbindin (dystrobrevin binding protein 1) domain containing 2
Tssr21599 2 164486519 to 164486655 136 + TSS region transcription start site region 21599
Tssr21600 2 164486856 to 164486898 42 + TSS region transcription start site region 21600
Tssr21601 2 164488103 to 164488127 24 + TSS region transcription start site region 21601
Tssr21602 2 164488197 to 164488200 3 + TSS region transcription start site region 21602
Tssr21603 2 164492032 to 164492034 2 + TSS region transcription start site region 21603
Cpgi12663 2 164497174 to 164498011 837 CpG island CpG island 12663
Tssr27490 2 164497444 to 164497475 31 - TSS region transcription start site region 27490
Tssr21604 2 164497518 to 164497560 42 + TSS region transcription start site region 21604
Pigt 2 164497520 to 164508301 10781 + protein coding gene phosphatidylinositol glycan anchor biosynthesis, class T
Tssr21605 2 164497961 to 164497984 23 + TSS region transcription start site region 21605
Tssr21606 2 164501502 to 164501516 14 + TSS region transcription start site region 21606
Tssr21607 2 164502577 to 164502596 19 + TSS region transcription start site region 21607
Tssr21608 2 164502620 to 164502636 16 + TSS region transcription start site region 21608
Cpgi12664 2 164507311 to 164507512 201 CpG island CpG island 12664
Tssr21609 2 164507392 to 164507433 41 + TSS region transcription start site region 21609
Tssr21610 2 164508248 to 164508258 10 + TSS region transcription start site region 21610
Tssr27491 2 164512171 to 164512182 11 - TSS region transcription start site region 27491
Tssr27492 2 164512204 to 164512218 14 - TSS region transcription start site region 27492
2310007H11Rik 2 164522216 to 164523756 1540 unclassified gene RIKEN cDNA 2310007H11 gene
Tssr21611 2 164523663 to 164523684 21 + TSS region transcription start site region 21611
Tssr756 2 164523690 to 164523708 18 + TSS region transcription start site region 756
Gm36090 2 164533247 to 164549375 16128 - lncRNA gene predicted gene, 36090
Tssr27493 2 164549320 to 164549335 15 - TSS region transcription start site region 27493
Tssr27494 2 164549339 to 164549350 11 - TSS region transcription start site region 27494
Gm14317 2 164550530 to 164559730 9200 + lincRNA gene predicted gene 14317
Tssr21612 2 164557733 to 164557747 14 + TSS region transcription start site region 21612
Wfdc2 2 164562561 to 164568510 5949 + protein coding gene WAP four-disulfide core domain 2
Tssr21613 2 164562707 to 164562721 14 + TSS region transcription start site region 21613
Tssr21614 2 164563316 to 164563340 24 + TSS region transcription start site region 21614
Cpgi12665 2 164563327 to 164563818 491 CpG island CpG island 12665
Tssr21615 2 164563414 to 164563430 16 + TSS region transcription start site region 21615
Tssr21616 2 164564104 to 164564115 11 + TSS region transcription start site region 21616
Tssr21617 2 164564153 to 164564173 20 + TSS region transcription start site region 21617
Tssr27495 2 164564178 to 164564215 37 - TSS region transcription start site region 27495
Tssr21618 2 164568352 to 164568405 53 + TSS region transcription start site region 21618
Tssr27496 2 164568492 to 164568512 20 - TSS region transcription start site region 27496
Spint3 2 164569695 to 164573456 3761 - protein coding gene serine peptidase inhibitor, Kunitz type, 3
Tssr27497 2 164573300 to 164573313 13 - TSS region transcription start site region 27497
Tssr27498 2 164573330 to 164573332 2 - TSS region transcription start site region 27498
Tssr27499 2 164573416 to 164573445 29 - TSS region transcription start site region 27499
Wfdc6a 2 164579519 to 164585447 5928 - protein coding gene WAP four-disulfide core domain 6A
Tssr27500 2 164585455 to 164585458 3 - TSS region transcription start site region 27500
Eppin 2 164588343 to 164593571 5228 - protein coding gene epididymal peptidase inhibitor
Tssr27501 2 164589568 to 164589583 15 - TSS region transcription start site region 27501
Cpgi12666 2 164589618 to 164589811 193 CpG island CpG island 12666
Tssr27502 2 164593514 to 164593526 12 - TSS region transcription start site region 27502
Tssr27503 2 164593533 to 164593537 4 - TSS region transcription start site region 27503
Tssr27504 2 164593538 to 164593577 39 - TSS region transcription start site region 27504
Tssr27505 2 164593588 to 164593603 15 - TSS region transcription start site region 27505
Tssr27506 2 164593606 to 164593615 9 - TSS region transcription start site region 27506
Wfdc8 2 164596458 to 164613626 17168 - protein coding gene WAP four-disulfide core domain 8
Gm25512 2 164601936 to 164602042 106 + snRNA gene predicted gene, 25512
Tssr27507 2 164608657 to 164608662 5 - TSS region transcription start site region 27507
Tssr27508 2 164608671 to 164608695 24 - TSS region transcription start site region 27508
Tssr27509 2 164608846 to 164608853 7 - TSS region transcription start site region 27509
Tssr27510 2 164608901 to 164608921 20 - TSS region transcription start site region 27510
Tssr757 2 164608930 to 164608933 3 - TSS region transcription start site region 757
Tssr21619 2 164613519 to 164613529 10 + TSS region transcription start site region 21619
Wfdc6b 2 164613578 to 164618213 4635 + protein coding gene WAP four-disulfide core domain 6B
Tssr27511 2 164613600 to 164613630 30 - TSS region transcription start site region 27511
Tssr758 2 164613693 to 164613703 10 + TSS region transcription start site region 758
Tssr759 2 164613730 to 164613738 8 + TSS region transcription start site region 759
Gm24473 2 164621922 to 164622052 130 + snoRNA gene predicted gene, 24473
Wfdc16 2 164634707 to 164638796 4089 - protein coding gene WAP four-disulfide core domain 16
Tssr27512 2 164638597 to 164638609 12 - TSS region transcription start site region 27512
Tssr27513 2 164638749 to 164638758 9 - TSS region transcription start site region 27513
Tssr27514 2 164638789 to 164638810 21 - TSS region transcription start site region 27514
Tssr27515 2 164638812 to 164638833 21 - TSS region transcription start site region 27515
Gm11456 2 164642945 to 164643200 255 - pseudogene predicted gene 11456
Tssr21620 2 164643863 to 164643865 2 + TSS region transcription start site region 21620
Tssr21621 2 164643951 to 164643957 6 + TSS region transcription start site region 21621