Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:16402994-18003123

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82 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Plxdc2 2 16356304 to 16755839 399535 + protein coding gene plexin domain containing 2
Tssr16324 2 16404158 to 16404162 4 + TSS region transcription start site region 16324
Tssr16325 2 16408528 to 16408540 12 + TSS region transcription start site region 16325
Tssr16326 2 16408547 to 16408564 17 + TSS region transcription start site region 16326
Tssr16327 2 16408691 to 16408715 24 + TSS region transcription start site region 16327
Tssr16328 2 16410550 to 16410566 16 + TSS region transcription start site region 16328
Tssr16329 2 16424517 to 16424522 5 + TSS region transcription start site region 16329
Tssr16330 2 16431735 to 16431752 17 + TSS region transcription start site region 16330
Tssr16331 2 16438293 to 16438319 26 + TSS region transcription start site region 16331
Tssr16332 2 16457336 to 16457347 11 + TSS region transcription start site region 16332
Tssr16333 2 16458859 to 16458908 49 + TSS region transcription start site region 16333
Tssr16334 2 16463844 to 16463856 12 + TSS region transcription start site region 16334
Tssr16335 2 16512152 to 16512164 12 + TSS region transcription start site region 16335
Tssr16336 2 16532052 to 16532079 27 + TSS region transcription start site region 16336
Tssr16337 2 16548737 to 16548755 18 + TSS region transcription start site region 16337
Tssr16338 2 16548928 to 16548953 25 + TSS region transcription start site region 16338
Tssr16339 2 16565402 to 16565409 7 + TSS region transcription start site region 16339
Tssr16340 2 16568520 to 16568550 30 + TSS region transcription start site region 16340
Tssr22741 2 16571860 to 16571870 10 - TSS region transcription start site region 22741
Tssr16341 2 16650178 to 16650190 12 + TSS region transcription start site region 16341
Tssr16342 2 16657415 to 16657420 5 + TSS region transcription start site region 16342
Tssr16343 2 16660820 to 16660837 17 + TSS region transcription start site region 16343
Tssr16344 2 16675231 to 16675266 35 + TSS region transcription start site region 16344
Tssr16345 2 16675302 to 16675306 4 + TSS region transcription start site region 16345
9930032E11Rik 2 16692247 to 16695625 3378 unclassified gene RIKEN cDNA 9930032E11 gene
Tssr22742 2 16712119 to 16712159 40 - TSS region transcription start site region 22742
Tssr16346 2 16729283 to 16729295 12 + TSS region transcription start site region 16346
Tssr16347 2 16751197 to 16751208 11 + TSS region transcription start site region 16347
Tssr16348 2 16751278 to 16751296 18 + TSS region transcription start site region 16348
Tssr16349 2 16751385 to 16751404 19 + TSS region transcription start site region 16349
Tssr16350 2 16755317 to 16755329 12 + TSS region transcription start site region 16350
Tssr16351 2 16758938 to 16758973 35 + TSS region transcription start site region 16351
Tssr16352 2 16776654 to 16776657 3 + TSS region transcription start site region 16352
4930515L03Rik 2 16918678 to 17013726 95048 - lncRNA gene RIKEN cDNA 4930515L03 gene
Gm24933 2 16959909 to 16960018 109 - miRNA gene predicted gene, 24933
Gm13326 2 16978821 to 16979831 1010 - pseudogene predicted gene 13326
2900073N21Rik 2 17017681 to 17018645 964 unclassified gene RIKEN cDNA 2900073N21 gene
Gm33002 2 17061614 to 17166869 105255 - lncRNA gene predicted gene, 33002
Gm13325 2 17169225 to 17170030 805 + pseudogene predicted gene 13325
Gm13322 2 17181743 to 17185487 3744 - lincRNA gene predicted gene 13322
Tssr22743 2 17185478 to 17185492 14 - TSS region transcription start site region 22743
Tssr22744 2 17202088 to 17202092 4 - TSS region transcription start site region 22744
D2Mit267 2 17202994 to 17203123 129 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 267
Nebl 2 17343909 to 17731464 387555 - protein coding gene nebulette
Tssr22745 2 17365307 to 17365321 14 - TSS region transcription start site region 22745
A430023P06Rik 2 17365431 to 17367972 2541 unclassified gene RIKEN cDNA A430023P06 gene
Tssr22746 2 17368615 to 17368651 36 - TSS region transcription start site region 22746
Tssr22747 2 17390860 to 17390871 11 - TSS region transcription start site region 22747
Tssr22748 2 17390874 to 17390884 10 - TSS region transcription start site region 22748
Tssr22749 2 17390890 to 17390899 9 - TSS region transcription start site region 22749
Tssr22750 2 17390910 to 17390943 33 - TSS region transcription start site region 22750
Tssr22751 2 17390953 to 17391042 89 - TSS region transcription start site region 22751
Tssr22752 2 17391094 to 17391105 11 - TSS region transcription start site region 22752
Tssr22753 2 17411156 to 17411161 5 - TSS region transcription start site region 22753
Tssr22754 2 17460583 to 17460594 11 - TSS region transcription start site region 22754
Tssr22755 2 17460600 to 17460609 9 - TSS region transcription start site region 22755
Tssr22756 2 17460610 to 17460635 25 - TSS region transcription start site region 22756
Tssr16353 2 17559054 to 17559065 11 + TSS region transcription start site region 16353
Gm13324 2 17559060 to 17559998 938 + antisense lncRNA gene predicted gene 13324
Mir6419 2 17563514 to 17563626 112 + miRNA gene microRNA 6419
D2Mit178 2 17605905 to 17606027 122 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 178
Tssr22757 2 17650393 to 17650397 4 - TSS region transcription start site region 22757
Tssr22758 2 17689771 to 17689784 13 - TSS region transcription start site region 22758
Tssr22759 2 17689879 to 17689890 11 - TSS region transcription start site region 22759
Tssr22760 2 17690130 to 17690144 14 - TSS region transcription start site region 22760
Tssr22761 2 17690176 to 17690186 10 - TSS region transcription start site region 22761
Tssr22762 2 17707023 to 17707026 3 - TSS region transcription start site region 22762
Cpgi11225 2 17730294 to 17731628 1334 CpG island CpG island 11225
Tssr22763 2 17731035 to 17731087 52 - TSS region transcription start site region 22763
Tssr22764 2 17731088 to 17731120 32 - TSS region transcription start site region 22764
Tssr22765 2 17731392 to 17731411 19 - TSS region transcription start site region 22765
Tssr22766 2 17731415 to 17731449 34 - TSS region transcription start site region 22766
Tssr22767 2 17731573 to 17731589 16 - TSS region transcription start site region 22767
Tssr22768 2 17731760 to 17731765 5 - TSS region transcription start site region 22768
Gm13323 2 17797328 to 17797674 346 - pseudogene predicted gene 13323
Cpgi11226 2 17839247 to 17839477 230 CpG island CpG island 11226
Cpgi11227 2 17899740 to 17899894 154 CpG island CpG island 11227
Cpgi11228 2 17932807 to 17932995 188 CpG island CpG island 11228
H2al2a 2 17996417 to 17996958 541 - protein coding gene H2A histone family member L2A
Tssr22769 2 17996917 to 17996919 2 - TSS region transcription start site region 22769
Tssr22770 2 17996924 to 17996945 21 - TSS region transcription start site region 22770
Gm13329 2 17998241 to 17998505 264 - pseudogene predicted gene 13329