Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:163939606-164229619

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75 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm35886 2 163919067 to 163943070 24003 + lncRNA gene predicted gene, 35886
Cpgi12645 2 163994683 to 163995863 1180 CpG island CpG island 12645
Tssr21496 2 163995138 to 163995149 11 + TSS region transcription start site region 21496
Tssr21497 2 163995150 to 163995229 79 + TSS region transcription start site region 21497
Ywhab 2 163995197 to 164018588 23391 + protein coding gene tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide
Tssr21498 2 163995235 to 163995246 11 + TSS region transcription start site region 21498
Tssr21499 2 163995271 to 163995282 11 + TSS region transcription start site region 21499
Tssr21500 2 164006558 to 164006583 25 + TSS region transcription start site region 21500
Tssr21501 2 164017245 to 164017261 16 + TSS region transcription start site region 21501
Tssr21502 2 164017471 to 164017485 14 + TSS region transcription start site region 21502
Tssr21503 2 164017587 to 164017604 17 + TSS region transcription start site region 21503
Tssr21504 2 164017666 to 164017684 18 + TSS region transcription start site region 21504
Tssr21505 2 164017938 to 164018028 90 + TSS region transcription start site region 21505
Tssr21506 2 164018075 to 164018089 14 + TSS region transcription start site region 21506
Tssr21507 2 164018094 to 164018128 34 + TSS region transcription start site region 21507
Pabpc1l 2 164025450 to 164050538 25088 + protein coding gene poly(A) binding protein, cytoplasmic 1-like
Cpgi12646 2 164025490 to 164025654 164 CpG island CpG island 12646
Tssr21508 2 164036982 to 164036996 14 + TSS region transcription start site region 21508
Tssr21509 2 164042368 to 164042375 7 + TSS region transcription start site region 21509
Tssr21510 2 164047345 to 164047401 56 + TSS region transcription start site region 21510
Tssr21511 2 164047629 to 164047644 15 + TSS region transcription start site region 21511
Tssr21512 2 164047667 to 164047676 9 + TSS region transcription start site region 21512
Tomm34 2 164053540 to 164071169 17629 - protein coding gene translocase of outer mitochondrial membrane 34
Tssr27338 2 164054177 to 164054179 2 - TSS region transcription start site region 27338
Tssr27339 2 164054344 to 164054355 11 - TSS region transcription start site region 27339
Tssr27340 2 164054823 to 164054838 15 - TSS region transcription start site region 27340
4933437I04Rik 2 164060814 to 164062286 1472 unclassified gene RIKEN cDNA 4933437I04 gene
Tssr27341 2 164060946 to 164060968 22 - TSS region transcription start site region 27341
Cpgi12647 2 164070268 to 164071455 1187 CpG island CpG island 12647
Tssr27342 2 164070443 to 164070459 16 - TSS region transcription start site region 27342
Tssr27343 2 164071049 to 164071052 3 - TSS region transcription start site region 27343
Tssr27344 2 164071089 to 164071118 29 - TSS region transcription start site region 27344
Tssr27345 2 164071124 to 164071146 22 - TSS region transcription start site region 27345
Cpgi12648 2 164073898 to 164074673 775 CpG island CpG island 12648
Tssr21513 2 164074102 to 164074117 15 + TSS region transcription start site region 21513
Stk4 2 164074113 to 164155521 81408 + protein coding gene serine/threonine kinase 4
Tssr21514 2 164074122 to 164074218 96 + TSS region transcription start site region 21514
Tssr27346 2 164075216 to 164075231 15 - TSS region transcription start site region 27346
Tssr21515 2 164077382 to 164077410 28 + TSS region transcription start site region 21515
Tssr27347 2 164077845 to 164077874 29 - TSS region transcription start site region 27347
Tssr27348 2 164077902 to 164077909 7 - TSS region transcription start site region 27348
Tssr21516 2 164078107 to 164078146 39 + TSS region transcription start site region 21516
Tssr21517 2 164078186 to 164078189 3 + TSS region transcription start site region 21517
Tssr21518 2 164078449 to 164078452 3 + TSS region transcription start site region 21518
Tssr27349 2 164079560 to 164079580 20 - TSS region transcription start site region 27349
Tssr27350 2 164083752 to 164083784 32 - TSS region transcription start site region 27350
Tssr21519 2 164084177 to 164084202 25 + TSS region transcription start site region 21519
Tssr21520 2 164084606 to 164084619 13 + TSS region transcription start site region 21520
Tssr21521 2 164084621 to 164084641 20 + TSS region transcription start site region 21521
Tssr27351 2 164087589 to 164087593 4 - TSS region transcription start site region 27351
6330575P09Rik 2 164091211 to 164092360 1149 unclassified non-coding RNA gene RIKEN cDNA 6330575P09 gene
Tssr21522 2 164129874 to 164129879 5 + TSS region transcription start site region 21522
Gm11455 2 164135703 to 164140419 4716 + antisense lncRNA gene predicted gene 11455
Tssr21523 2 164154622 to 164154645 23 + TSS region transcription start site region 21523
n-R5s207 2 164157404 to 164157521 117 - rRNA gene nuclear encoded rRNA 5S 207
Kcns1 2 164163619 to 164171113 7494 - protein coding gene K+ voltage-gated channel, subfamily S, 1
Cpgi12649 2 164167631 to 164169116 1485 CpG island CpG island 12649
Cpgi12650 2 164170932 to 164171292 360 CpG island CpG island 12650
Wfdc5 2 164176327 to 164182742 6415 - protein coding gene WAP four-disulfide core domain 5
A730032A03Rik 2 164177584 to 164196564 18980 + antisense lncRNA gene RIKEN cDNA A730032A03 gene
Tssr27352 2 164182592 to 164182612 20 - TSS region transcription start site region 27352
Tssr27353 2 164182618 to 164182634 16 - TSS region transcription start site region 27353
Tssr27354 2 164182638 to 164182652 14 - TSS region transcription start site region 27354
Tssr27355 2 164182667 to 164182686 19 - TSS region transcription start site region 27355
Tssr27356 2 164182713 to 164182720 7 - TSS region transcription start site region 27356
Tssr27357 2 164182729 to 164182766 37 - TSS region transcription start site region 27357
Wfdc12 2 164189231 to 164190558 1327 - protein coding gene WAP four-disulfide core domain 12
Tssr21524 2 164189597 to 164189600 3 + TSS region transcription start site region 21524
Tssr27358 2 164190576 to 164190590 14 - TSS region transcription start site region 27358
Tssr27359 2 164190601 to 164190614 13 - TSS region transcription start site region 27359
Wfdc15a 2 164198872 to 164200117 1245 - protein coding gene WAP four-disulfide core domain 15A
Tssr27360 2 164200076 to 164200150 74 - TSS region transcription start site region 27360
Tssr735 2 164212574 to 164212580 6 + TSS region transcription start site region 735
Wfdc15b 2 164214454 to 164221660 7206 - protein coding gene WAP four-disulfide core domain 15B
Tssr27361 2 164221605 to 164221677 72 - TSS region transcription start site region 27361