Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:163820271-164170282

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67 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr21494 2 163820832 to 163820894 62 + TSS region transcription start site region 21494
Ccn5 2 163820861 to 163833146 12285 + protein coding gene cellular communication network factor 5
Cpgi12642 2 163853342 to 163854358 1016 CpG island CpG island 12642
Kcnk15 2 163853750 to 163858874 5124 + protein coding gene potassium channel, subfamily K, member 15
Cpgi12643 2 163858130 to 163858969 839 CpG island CpG island 12643
Rims4 2 163859751 to 163918683 58932 - protein coding gene regulating synaptic membrane exocytosis 4
Tssr21495 2 163890961 to 163890962 1 + TSS region transcription start site region 21495
Cpgi12644 2 163918071 to 163919656 1585 CpG island CpG island 12644
Tssr27337 2 163918962 to 163918979 17 - TSS region transcription start site region 27337
Gm35886 2 163919067 to 163943070 24003 + lncRNA gene predicted gene, 35886
D2Mit462 2 163938281 to 163938429 148 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology-462
Cpgi12645 2 163994683 to 163995863 1180 CpG island CpG island 12645
Tssr21496 2 163995138 to 163995149 11 + TSS region transcription start site region 21496
Tssr21497 2 163995150 to 163995229 79 + TSS region transcription start site region 21497
Ywhab 2 163995197 to 164018588 23391 + protein coding gene tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide
Tssr21498 2 163995235 to 163995246 11 + TSS region transcription start site region 21498
Tssr21499 2 163995271 to 163995282 11 + TSS region transcription start site region 21499
Tssr21500 2 164006558 to 164006583 25 + TSS region transcription start site region 21500
Tssr21501 2 164017245 to 164017261 16 + TSS region transcription start site region 21501
Tssr21502 2 164017471 to 164017485 14 + TSS region transcription start site region 21502
Tssr21503 2 164017587 to 164017604 17 + TSS region transcription start site region 21503
Tssr21504 2 164017666 to 164017684 18 + TSS region transcription start site region 21504
Tssr21505 2 164017938 to 164018028 90 + TSS region transcription start site region 21505
Tssr21506 2 164018075 to 164018089 14 + TSS region transcription start site region 21506
Tssr21507 2 164018094 to 164018128 34 + TSS region transcription start site region 21507
Pabpc1l 2 164025450 to 164050538 25088 + protein coding gene poly(A) binding protein, cytoplasmic 1-like
Cpgi12646 2 164025490 to 164025654 164 CpG island CpG island 12646
Tssr21508 2 164036982 to 164036996 14 + TSS region transcription start site region 21508
Tssr21509 2 164042368 to 164042375 7 + TSS region transcription start site region 21509
Tssr21510 2 164047345 to 164047401 56 + TSS region transcription start site region 21510
Tssr21511 2 164047629 to 164047644 15 + TSS region transcription start site region 21511
Tssr21512 2 164047667 to 164047676 9 + TSS region transcription start site region 21512
Tomm34 2 164053540 to 164071169 17629 - protein coding gene translocase of outer mitochondrial membrane 34
Tssr27338 2 164054177 to 164054179 2 - TSS region transcription start site region 27338
Tssr27339 2 164054344 to 164054355 11 - TSS region transcription start site region 27339
Tssr27340 2 164054823 to 164054838 15 - TSS region transcription start site region 27340
4933437I04Rik 2 164060814 to 164062286 1472 unclassified gene RIKEN cDNA 4933437I04 gene
Tssr27341 2 164060946 to 164060968 22 - TSS region transcription start site region 27341
Cpgi12647 2 164070268 to 164071455 1187 CpG island CpG island 12647
Tssr27342 2 164070443 to 164070459 16 - TSS region transcription start site region 27342
Tssr27343 2 164071049 to 164071052 3 - TSS region transcription start site region 27343
Tssr27344 2 164071089 to 164071118 29 - TSS region transcription start site region 27344
Tssr27345 2 164071124 to 164071146 22 - TSS region transcription start site region 27345
Cpgi12648 2 164073898 to 164074673 775 CpG island CpG island 12648
Tssr21513 2 164074102 to 164074117 15 + TSS region transcription start site region 21513
Stk4 2 164074113 to 164155521 81408 + protein coding gene serine/threonine kinase 4
Tssr21514 2 164074122 to 164074218 96 + TSS region transcription start site region 21514
Tssr27346 2 164075216 to 164075231 15 - TSS region transcription start site region 27346
Tssr21515 2 164077382 to 164077410 28 + TSS region transcription start site region 21515
Tssr27347 2 164077845 to 164077874 29 - TSS region transcription start site region 27347
Tssr27348 2 164077902 to 164077909 7 - TSS region transcription start site region 27348
Tssr21516 2 164078107 to 164078146 39 + TSS region transcription start site region 21516
Tssr21517 2 164078186 to 164078189 3 + TSS region transcription start site region 21517
Tssr21518 2 164078449 to 164078452 3 + TSS region transcription start site region 21518
Tssr27349 2 164079560 to 164079580 20 - TSS region transcription start site region 27349
Tssr27350 2 164083752 to 164083784 32 - TSS region transcription start site region 27350
Tssr21519 2 164084177 to 164084202 25 + TSS region transcription start site region 21519
Tssr21520 2 164084606 to 164084619 13 + TSS region transcription start site region 21520
Tssr21521 2 164084621 to 164084641 20 + TSS region transcription start site region 21521
Tssr27351 2 164087589 to 164087593 4 - TSS region transcription start site region 27351
6330575P09Rik 2 164091211 to 164092360 1149 unclassified non-coding RNA gene RIKEN cDNA 6330575P09 gene
Tssr21522 2 164129874 to 164129879 5 + TSS region transcription start site region 21522
Gm11455 2 164135703 to 164140419 4716 + antisense lncRNA gene predicted gene 11455
Tssr21523 2 164154622 to 164154645 23 + TSS region transcription start site region 21523
n-R5s207 2 164157404 to 164157521 117 - rRNA gene nuclear encoded rRNA 5S 207
Kcns1 2 164163619 to 164171113 7494 - protein coding gene K+ voltage-gated channel, subfamily S, 1
Cpgi12649 2 164167631 to 164169116 1485 CpG island CpG island 12649