Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:163560832-164080894

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126 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hnf4a 2 163506809 to 163572907 66098 + protein coding gene hepatic nuclear factor 4, alpha
Tssr21474 2 163570286 to 163570314 28 + TSS region transcription start site region 21474
Gm18590 2 163585220 to 163585752 532 + pseudogene predicted gene, 18590
Tssr27299 2 163587587 to 163587599 12 - TSS region transcription start site region 27299
Cpgi12638 2 163601998 to 163602999 1001 CpG island CpG island 12638
Tssr21475 2 163602294 to 163602309 15 + TSS region transcription start site region 21475
Ttpal 2 163602314 to 163619013 16699 + protein coding gene tocopherol (alpha) transfer protein-like
Tssr21476 2 163602331 to 163602359 28 + TSS region transcription start site region 21476
Tssr27300 2 163623271 to 163623273 2 - TSS region transcription start site region 27300
Serinc3 2 163623272 to 163645131 21859 - protein coding gene serine incorporator 3
Tssr27301 2 163624545 to 163624565 20 - TSS region transcription start site region 27301
Tssr27302 2 163624864 to 163624971 107 - TSS region transcription start site region 27302
Tssr27303 2 163624972 to 163625017 45 - TSS region transcription start site region 27303
Tssr27304 2 163625112 to 163625126 14 - TSS region transcription start site region 27304
Tssr27305 2 163625413 to 163625458 45 - TSS region transcription start site region 27305
Tssr27306 2 163625470 to 163625534 64 - TSS region transcription start site region 27306
Tssr27307 2 163626305 to 163626342 37 - TSS region transcription start site region 27307
Tssr27308 2 163627950 to 163627971 21 - TSS region transcription start site region 27308
Tssr27309 2 163627975 to 163627996 21 - TSS region transcription start site region 27309
Tssr27310 2 163628005 to 163628056 51 - TSS region transcription start site region 27310
Tssr21477 2 163629147 to 163629187 40 + TSS region transcription start site region 21477
Tssr27311 2 163629175 to 163629222 47 - TSS region transcription start site region 27311
Tssr21478 2 163630928 to 163630941 13 + TSS region transcription start site region 21478
Tssr21479 2 163630962 to 163630978 16 + TSS region transcription start site region 21479
Tssr27312 2 163630975 to 163631103 128 - TSS region transcription start site region 27312
Tssr21480 2 163631003 to 163631023 20 + TSS region transcription start site region 21480
Tssr27313 2 163632166 to 163632171 5 - TSS region transcription start site region 27313
Tssr27314 2 163632175 to 163632192 17 - TSS region transcription start site region 27314
Tssr27315 2 163632200 to 163632223 23 - TSS region transcription start site region 27315
D2Mit455 2 163632329 to 163632449 120 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 455
Tssr27316 2 163634461 to 163634474 13 - TSS region transcription start site region 27316
Tssr27317 2 163634497 to 163634518 21 - TSS region transcription start site region 27317
Tssr27318 2 163636836 to 163636879 43 - TSS region transcription start site region 27318
Tssr27319 2 163639197 to 163639342 145 - TSS region transcription start site region 27319
Tssr27320 2 163643303 to 163643307 4 - TSS region transcription start site region 27320
Cpgi12639 2 163644551 to 163645381 830 CpG island CpG island 12639
Tssr27321 2 163644690 to 163644770 80 - TSS region transcription start site region 27321
0610039K10Rik 2 163644850 to 163645800 950 + antisense lncRNA gene RIKEN cDNA 0610039K10 gene
Tssr27322 2 163645051 to 163645056 5 - TSS region transcription start site region 27322
Tssr27323 2 163645081 to 163645096 15 - TSS region transcription start site region 27323
Tssr27324 2 163645107 to 163645112 5 - TSS region transcription start site region 27324
Tssr27325 2 163645125 to 163645136 11 - TSS region transcription start site region 27325
Tssr27326 2 163645147 to 163645152 5 - TSS region transcription start site region 27326
Tssr21481 2 163645240 to 163645254 14 + TSS region transcription start site region 21481
Tssr27327 2 163645837 to 163645847 10 - TSS region transcription start site region 27327
Cpgi12640 2 163658189 to 163658891 702 CpG island CpG island 12640
Tssr21482 2 163658370 to 163658510 140 + TSS region transcription start site region 21482
Pkig 2 163658386 to 163726158 67772 + protein coding gene protein kinase inhibitor, gamma
Tssr21483 2 163658515 to 163658526 11 + TSS region transcription start site region 21483
Tssr21484 2 163658529 to 163658534 5 + TSS region transcription start site region 21484
Tssr21485 2 163658597 to 163658608 11 + TSS region transcription start site region 21485
Tssr21486 2 163659116 to 163659131 15 + TSS region transcription start site region 21486
Tssr21487 2 163659134 to 163659167 33 + TSS region transcription start site region 21487
Tssr21488 2 163659169 to 163659181 12 + TSS region transcription start site region 21488
Tssr21489 2 163661495 to 163661498 3 + TSS region transcription start site region 21489
Tssr21490 2 163662884 to 163662906 22 + TSS region transcription start site region 21490
Gm16316 2 163685716 to 163692449 6733 - antisense lncRNA gene predicted gene 16316
Tssr27328 2 163690598 to 163690608 10 - TSS region transcription start site region 27328
Tssr27329 2 163690680 to 163690695 15 - TSS region transcription start site region 27329
Tssr27330 2 163690764 to 163690767 3 - TSS region transcription start site region 27330
Tssr27331 2 163690825 to 163690835 10 - TSS region transcription start site region 27331
Tssr27332 2 163692105 to 163692108 3 - TSS region transcription start site region 27332
Tssr21491 2 163694015 to 163694058 43 + TSS region transcription start site region 21491
Tssr21492 2 163721234 to 163721249 15 + TSS region transcription start site region 21492
Tssr21493 2 163725670 to 163725693 23 + TSS region transcription start site region 21493
Ada 2 163726584 to 163750239 23655 - protein coding gene adenosine deaminase
Tssr27333 2 163730361 to 163730372 11 - TSS region transcription start site region 27333
Tssr27334 2 163736266 to 163736278 12 - TSS region transcription start site region 27334
Cpgi12641 2 163749737 to 163750617 880 CpG island CpG island 12641
Tssr27335 2 163750169 to 163750183 14 - TSS region transcription start site region 27335
Tssr27336 2 163750207 to 163750233 26 - TSS region transcription start site region 27336
Tssr21494 2 163820832 to 163820894 62 + TSS region transcription start site region 21494
Ccn5 2 163820861 to 163833146 12285 + protein coding gene cellular communication network factor 5
Cpgi12642 2 163853342 to 163854358 1016 CpG island CpG island 12642
Kcnk15 2 163853750 to 163858874 5124 + protein coding gene potassium channel, subfamily K, member 15
Cpgi12643 2 163858130 to 163858969 839 CpG island CpG island 12643
Rims4 2 163859751 to 163918683 58932 - protein coding gene regulating synaptic membrane exocytosis 4
Tssr21495 2 163890961 to 163890962 1 + TSS region transcription start site region 21495
Cpgi12644 2 163918071 to 163919656 1585 CpG island CpG island 12644
Tssr27337 2 163918962 to 163918979 17 - TSS region transcription start site region 27337
Gm35886 2 163919067 to 163943070 24003 + lncRNA gene predicted gene, 35886
D2Mit462 2 163938281 to 163938429 148 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology-462
Cpgi12645 2 163994683 to 163995863 1180 CpG island CpG island 12645
Tssr21496 2 163995138 to 163995149 11 + TSS region transcription start site region 21496
Tssr21497 2 163995150 to 163995229 79 + TSS region transcription start site region 21497
Ywhab 2 163995197 to 164018588 23391 + protein coding gene tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide
Tssr21498 2 163995235 to 163995246 11 + TSS region transcription start site region 21498
Tssr21499 2 163995271 to 163995282 11 + TSS region transcription start site region 21499
Tssr21500 2 164006558 to 164006583 25 + TSS region transcription start site region 21500
Tssr21501 2 164017245 to 164017261 16 + TSS region transcription start site region 21501
Tssr21502 2 164017471 to 164017485 14 + TSS region transcription start site region 21502
Tssr21503 2 164017587 to 164017604 17 + TSS region transcription start site region 21503
Tssr21504 2 164017666 to 164017684 18 + TSS region transcription start site region 21504
Tssr21505 2 164017938 to 164018028 90 + TSS region transcription start site region 21505
Tssr21506 2 164018075 to 164018089 14 + TSS region transcription start site region 21506
Tssr21507 2 164018094 to 164018128 34 + TSS region transcription start site region 21507
Pabpc1l 2 164025450 to 164050538 25088 + protein coding gene poly(A) binding protein, cytoplasmic 1-like
Cpgi12646 2 164025490 to 164025654 164 CpG island CpG island 12646
Tssr21508 2 164036982 to 164036996 14 + TSS region transcription start site region 21508
Tssr21509 2 164042368 to 164042375 7 + TSS region transcription start site region 21509
Tssr21510 2 164047345 to 164047401 56 + TSS region transcription start site region 21510
Tssr21511 2 164047629 to 164047644 15 + TSS region transcription start site region 21511
Tssr21512 2 164047667 to 164047676 9 + TSS region transcription start site region 21512
Tomm34 2 164053540 to 164071169 17629 - protein coding gene translocase of outer mitochondrial membrane 34
Tssr27338 2 164054177 to 164054179 2 - TSS region transcription start site region 27338
Tssr27339 2 164054344 to 164054355 11 - TSS region transcription start site region 27339
Tssr27340 2 164054823 to 164054838 15 - TSS region transcription start site region 27340
4933437I04Rik 2 164060814 to 164062286 1472 unclassified gene RIKEN cDNA 4933437I04 gene
Tssr27341 2 164060946 to 164060968 22 - TSS region transcription start site region 27341
Cpgi12647 2 164070268 to 164071455 1187 CpG island CpG island 12647
Tssr27342 2 164070443 to 164070459 16 - TSS region transcription start site region 27342
Tssr27343 2 164071049 to 164071052 3 - TSS region transcription start site region 27343
Tssr27344 2 164071089 to 164071118 29 - TSS region transcription start site region 27344
Tssr27345 2 164071124 to 164071146 22 - TSS region transcription start site region 27345
Cpgi12648 2 164073898 to 164074673 775 CpG island CpG island 12648
Tssr21513 2 164074102 to 164074117 15 + TSS region transcription start site region 21513
Stk4 2 164074113 to 164155521 81408 + protein coding gene serine/threonine kinase 4
Tssr21514 2 164074122 to 164074218 96 + TSS region transcription start site region 21514
Tssr27346 2 164075216 to 164075231 15 - TSS region transcription start site region 27346
Tssr21515 2 164077382 to 164077410 28 + TSS region transcription start site region 21515
Tssr27347 2 164077845 to 164077874 29 - TSS region transcription start site region 27347
Tssr27348 2 164077902 to 164077909 7 - TSS region transcription start site region 27348
Tssr21516 2 164078107 to 164078146 39 + TSS region transcription start site region 21516
Tssr21517 2 164078186 to 164078189 3 + TSS region transcription start site region 21517
Tssr21518 2 164078449 to 164078452 3 + TSS region transcription start site region 21518
Tssr27349 2 164079560 to 164079580 20 - TSS region transcription start site region 27349