Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:163427133-163667146

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85 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D2Mit498 2 163429126 to 163429246 120 DNA segment DNA Segment, Chr 2 Massachusetts Institute of Technology 498
Cpgi12634 2 163438372 to 163438933 561 CpG island CpG island 12634
Tssr21464 2 163438455 to 163438536 81 + TSS region transcription start site region 21464
Gdap1l1 2 163438476 to 163455324 16848 + protein coding gene ganglioside-induced differentiation-associated protein 1-like 1
Tssr21465 2 163438539 to 163438546 7 + TSS region transcription start site region 21465
Gm39979 2 163456471 to 163461813 5342 + lncRNA gene predicted gene, 39979
Fitm2 2 163468703 to 163472629 3926 - protein coding gene fat storage-inducing transmembrane protein 2
Cpgi12635 2 163471941 to 163472825 884 CpG island CpG island 12635
Tssr27293 2 163472510 to 163472522 12 - TSS region transcription start site region 27293
2310001K24Rik 2 163472545 to 163473003 458 + antisense lncRNA gene RIKEN cDNA 2310001K24 gene
Tssr27294 2 163472561 to 163472635 74 - TSS region transcription start site region 27294
Tssr27295 2 163472636 to 163472668 32 - TSS region transcription start site region 27295
Cpgi12636 2 163481623 to 163482286 663 CpG island CpG island 12636
Tssr21466 2 163491605 to 163491617 12 + TSS region transcription start site region 21466
Tssr21467 2 163491655 to 163491677 22 + TSS region transcription start site region 21467
Tssr21468 2 163491709 to 163491722 13 + TSS region transcription start site region 21468
R3hdml 2 163492318 to 163502612 10294 + protein coding gene R3H domain containing-like
Hnf4aos 2 163493807 to 163541720 47913 - antisense lncRNA gene hepatic nuclear factor 4 alpha, opposite strand
Hnf4a 2 163506809 to 163572907 66098 + protein coding gene hepatic nuclear factor 4, alpha
Tssr21469 2 163506822 to 163506860 38 + TSS region transcription start site region 21469
Tssr27296 2 163509630 to 163509644 14 - TSS region transcription start site region 27296
Gm25881 2 163514516 to 163514618 102 + snRNA gene predicted gene, 25881
Tssr27297 2 163517615 to 163517622 7 - TSS region transcription start site region 27297
Cpgi12637 2 163535001 to 163535365 364 CpG island CpG island 12637
Tssr27298 2 163541715 to 163541728 13 - TSS region transcription start site region 27298
Tssr21470 2 163547133 to 163547146 13 + TSS region transcription start site region 21470
Tssr21471 2 163547148 to 163547168 20 + TSS region transcription start site region 21471
Tssr734 2 163547253 to 163547289 36 + TSS region transcription start site region 734
Tssr21472 2 163547338 to 163547350 12 + TSS region transcription start site region 21472
Tssr21473 2 163551622 to 163551634 12 + TSS region transcription start site region 21473
Tssr21474 2 163570286 to 163570314 28 + TSS region transcription start site region 21474
Gm18590 2 163585220 to 163585752 532 + pseudogene predicted gene, 18590
Tssr27299 2 163587587 to 163587599 12 - TSS region transcription start site region 27299
Cpgi12638 2 163601998 to 163602999 1001 CpG island CpG island 12638
Tssr21475 2 163602294 to 163602309 15 + TSS region transcription start site region 21475
Ttpal 2 163602314 to 163619013 16699 + protein coding gene tocopherol (alpha) transfer protein-like
Tssr21476 2 163602331 to 163602359 28 + TSS region transcription start site region 21476
Tssr27300 2 163623271 to 163623273 2 - TSS region transcription start site region 27300
Serinc3 2 163623272 to 163645131 21859 - protein coding gene serine incorporator 3
Tssr27301 2 163624545 to 163624565 20 - TSS region transcription start site region 27301
Tssr27302 2 163624864 to 163624971 107 - TSS region transcription start site region 27302
Tssr27303 2 163624972 to 163625017 45 - TSS region transcription start site region 27303
Tssr27304 2 163625112 to 163625126 14 - TSS region transcription start site region 27304
Tssr27305 2 163625413 to 163625458 45 - TSS region transcription start site region 27305
Tssr27306 2 163625470 to 163625534 64 - TSS region transcription start site region 27306
Tssr27307 2 163626305 to 163626342 37 - TSS region transcription start site region 27307
Tssr27308 2 163627950 to 163627971 21 - TSS region transcription start site region 27308
Tssr27309 2 163627975 to 163627996 21 - TSS region transcription start site region 27309
Tssr27310 2 163628005 to 163628056 51 - TSS region transcription start site region 27310
Tssr21477 2 163629147 to 163629187 40 + TSS region transcription start site region 21477
Tssr27311 2 163629175 to 163629222 47 - TSS region transcription start site region 27311
Tssr21478 2 163630928 to 163630941 13 + TSS region transcription start site region 21478
Tssr21479 2 163630962 to 163630978 16 + TSS region transcription start site region 21479
Tssr27312 2 163630975 to 163631103 128 - TSS region transcription start site region 27312
Tssr21480 2 163631003 to 163631023 20 + TSS region transcription start site region 21480
Tssr27313 2 163632166 to 163632171 5 - TSS region transcription start site region 27313
Tssr27314 2 163632175 to 163632192 17 - TSS region transcription start site region 27314
Tssr27315 2 163632200 to 163632223 23 - TSS region transcription start site region 27315
D2Mit455 2 163632329 to 163632449 120 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 455
Tssr27316 2 163634461 to 163634474 13 - TSS region transcription start site region 27316
Tssr27317 2 163634497 to 163634518 21 - TSS region transcription start site region 27317
Tssr27318 2 163636836 to 163636879 43 - TSS region transcription start site region 27318
Tssr27319 2 163639197 to 163639342 145 - TSS region transcription start site region 27319
Tssr27320 2 163643303 to 163643307 4 - TSS region transcription start site region 27320
Cpgi12639 2 163644551 to 163645381 830 CpG island CpG island 12639
Tssr27321 2 163644690 to 163644770 80 - TSS region transcription start site region 27321
0610039K10Rik 2 163644850 to 163645800 950 + antisense lncRNA gene RIKEN cDNA 0610039K10 gene
Tssr27322 2 163645051 to 163645056 5 - TSS region transcription start site region 27322
Tssr27323 2 163645081 to 163645096 15 - TSS region transcription start site region 27323
Tssr27324 2 163645107 to 163645112 5 - TSS region transcription start site region 27324
Tssr27325 2 163645125 to 163645136 11 - TSS region transcription start site region 27325
Tssr27326 2 163645147 to 163645152 5 - TSS region transcription start site region 27326
Tssr21481 2 163645240 to 163645254 14 + TSS region transcription start site region 21481
Tssr27327 2 163645837 to 163645847 10 - TSS region transcription start site region 27327
Cpgi12640 2 163658189 to 163658891 702 CpG island CpG island 12640
Tssr21482 2 163658370 to 163658510 140 + TSS region transcription start site region 21482
Pkig 2 163658386 to 163726158 67772 + protein coding gene protein kinase inhibitor, gamma
Tssr21483 2 163658515 to 163658526 11 + TSS region transcription start site region 21483
Tssr21484 2 163658529 to 163658534 5 + TSS region transcription start site region 21484
Tssr21485 2 163658597 to 163658608 11 + TSS region transcription start site region 21485
Tssr21486 2 163659116 to 163659131 15 + TSS region transcription start site region 21486
Tssr21487 2 163659134 to 163659167 33 + TSS region transcription start site region 21487
Tssr21488 2 163659169 to 163659181 12 + TSS region transcription start site region 21488
Tssr21489 2 163661495 to 163661498 3 + TSS region transcription start site region 21489
Tssr21490 2 163662884 to 163662906 22 + TSS region transcription start site region 21490