Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:163229795-163610361

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67 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tox2 2 163202643 to 163323315 120672 + protein coding gene TOX high mobility group box family member 2
Cpgi12629 2 163288998 to 163289159 161 CpG island CpG island 12629
Tssr21455 2 163314493 to 163314498 5 + TSS region transcription start site region 21455
Tssr21456 2 163323268 to 163323280 12 + TSS region transcription start site region 21456
Tssr21457 2 163323332 to 163323341 9 + TSS region transcription start site region 21457
Tssr21458 2 163323347 to 163323360 13 + TSS region transcription start site region 21458
Tssr21459 2 163323375 to 163323390 15 + TSS region transcription start site region 21459
Tssr21460 2 163323403 to 163323424 21 + TSS region transcription start site region 21460
Tssr21461 2 163323426 to 163323437 11 + TSS region transcription start site region 21461
Tssr27283 2 163331305 to 163331308 3 - TSS region transcription start site region 27283
D2Mit71 2 163335509 to 163335671 162 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 71
Jph2 2 163336242 to 163397993 61751 - protein coding gene junctophilin 2
Cpgi12630 2 163339005 to 163340095 1090 CpG island CpG island 12630
Gm35750 2 163355055 to 163365260 10205 + lncRNA gene predicted gene, 35750
Tssr27284 2 163357370 to 163357379 9 - TSS region transcription start site region 27284
Cpgi12631 2 163375259 to 163376555 1296 CpG island CpG island 12631
Tssr27285 2 163375412 to 163375427 15 - TSS region transcription start site region 27285
Cpgi12632 2 163397066 to 163397537 471 CpG island CpG island 12632
Tssr27286 2 163397842 to 163397856 14 - TSS region transcription start site region 27286
Tssr27287 2 163397887 to 163397899 12 - TSS region transcription start site region 27287
Tssr27288 2 163397913 to 163397944 31 - TSS region transcription start site region 27288
Tssr27289 2 163397946 to 163398000 54 - TSS region transcription start site region 27289
Tssr21462 2 163405822 to 163405826 4 + TSS region transcription start site region 21462
Oser1 2 163405822 to 163419470 13648 - protein coding gene oxidative stress responsive serine rich 1
Tssr27290 2 163417092 to 163417097 5 - TSS region transcription start site region 27290
Cpgi12633 2 163418823 to 163420095 1272 CpG island CpG island 12633
Tssr27291 2 163419114 to 163419166 52 - TSS region transcription start site region 27291
Tssr27292 2 163419508 to 163419548 40 - TSS region transcription start site region 27292
Tssr21463 2 163419767 to 163419830 63 + TSS region transcription start site region 21463
2900093K20Rik 2 163419795 to 163420361 566 + antisense lncRNA gene RIKEN cDNA 2900093K20 gene
D2Mit498 2 163429126 to 163429246 120 DNA segment DNA Segment, Chr 2 Massachusetts Institute of Technology 498
Cpgi12634 2 163438372 to 163438933 561 CpG island CpG island 12634
Tssr21464 2 163438455 to 163438536 81 + TSS region transcription start site region 21464
Gdap1l1 2 163438476 to 163455324 16848 + protein coding gene ganglioside-induced differentiation-associated protein 1-like 1
Tssr21465 2 163438539 to 163438546 7 + TSS region transcription start site region 21465
Gm39979 2 163456471 to 163461813 5342 + lncRNA gene predicted gene, 39979
Fitm2 2 163468703 to 163472629 3926 - protein coding gene fat storage-inducing transmembrane protein 2
Cpgi12635 2 163471941 to 163472825 884 CpG island CpG island 12635
Tssr27293 2 163472510 to 163472522 12 - TSS region transcription start site region 27293
2310001K24Rik 2 163472545 to 163473003 458 + antisense lncRNA gene RIKEN cDNA 2310001K24 gene
Tssr27294 2 163472561 to 163472635 74 - TSS region transcription start site region 27294
Tssr27295 2 163472636 to 163472668 32 - TSS region transcription start site region 27295
Cpgi12636 2 163481623 to 163482286 663 CpG island CpG island 12636
Tssr21466 2 163491605 to 163491617 12 + TSS region transcription start site region 21466
Tssr21467 2 163491655 to 163491677 22 + TSS region transcription start site region 21467
Tssr21468 2 163491709 to 163491722 13 + TSS region transcription start site region 21468
R3hdml 2 163492318 to 163502612 10294 + protein coding gene R3H domain containing-like
Hnf4aos 2 163493807 to 163541720 47913 - antisense lncRNA gene hepatic nuclear factor 4 alpha, opposite strand
Hnf4a 2 163506809 to 163572907 66098 + protein coding gene hepatic nuclear factor 4, alpha
Tssr21469 2 163506822 to 163506860 38 + TSS region transcription start site region 21469
Tssr27296 2 163509630 to 163509644 14 - TSS region transcription start site region 27296
Gm25881 2 163514516 to 163514618 102 + snRNA gene predicted gene, 25881
Tssr27297 2 163517615 to 163517622 7 - TSS region transcription start site region 27297
Cpgi12637 2 163535001 to 163535365 364 CpG island CpG island 12637
Tssr27298 2 163541715 to 163541728 13 - TSS region transcription start site region 27298
Tssr21470 2 163547133 to 163547146 13 + TSS region transcription start site region 21470
Tssr21471 2 163547148 to 163547168 20 + TSS region transcription start site region 21471
Tssr734 2 163547253 to 163547289 36 + TSS region transcription start site region 734
Tssr21472 2 163547338 to 163547350 12 + TSS region transcription start site region 21472
Tssr21473 2 163551622 to 163551634 12 + TSS region transcription start site region 21473
Tssr21474 2 163570286 to 163570314 28 + TSS region transcription start site region 21474
Gm18590 2 163585220 to 163585752 532 + pseudogene predicted gene, 18590
Tssr27299 2 163587587 to 163587599 12 - TSS region transcription start site region 27299
Cpgi12638 2 163601998 to 163602999 1001 CpG island CpG island 12638
Tssr21475 2 163602294 to 163602309 15 + TSS region transcription start site region 21475
Ttpal 2 163602314 to 163619013 16699 + protein coding gene tocopherol (alpha) transfer protein-like
Tssr21476 2 163602331 to 163602359 28 + TSS region transcription start site region 21476