Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:162988172-163418179

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77 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sgk2 2 162987330 to 163014127 26797 + protein coding gene serum/glucocorticoid regulated kinase 2
Tssr21428 2 162991587 to 162991598 11 + TSS region transcription start site region 21428
Tssr21429 2 163007460 to 163007463 3 + TSS region transcription start site region 21429
Cpgi12624 2 163016940 to 163017756 816 CpG island CpG island 12624
Ift52 2 163017354 to 163046141 28787 + protein coding gene intraflagellar transport 52
Tssr21430 2 163017450 to 163017513 63 + TSS region transcription start site region 21430
Tssr27276 2 163031427 to 163031438 11 - TSS region transcription start site region 27276
Cpgi12625 2 163048117 to 163048308 191 CpG island CpG island 12625
Cpgi12626 2 163054252 to 163055404 1152 CpG island CpG island 12626
Tssr27277 2 163054407 to 163054420 13 - TSS region transcription start site region 27277
Tssr27278 2 163054443 to 163054454 11 - TSS region transcription start site region 27278
Tssr21431 2 163054570 to 163054583 13 + TSS region transcription start site region 21431
Tssr21432 2 163054591 to 163054649 58 + TSS region transcription start site region 21432
Tssr21433 2 163054651 to 163054677 26 + TSS region transcription start site region 21433
Tssr21434 2 163054682 to 163054693 11 + TSS region transcription start site region 21434
Mybl2 2 163054687 to 163084688 30001 + protein coding gene myeloblastosis oncogene-like 2
Tssr21435 2 163059167 to 163059193 26 + TSS region transcription start site region 21435
Tssr21436 2 163059208 to 163059219 11 + TSS region transcription start site region 21436
Tssr21437 2 163059396 to 163059418 22 + TSS region transcription start site region 21437
D2Mit290 2 163060474 to 163060662 188 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 290
D2Mit290.4 2 163060619 to 163060768 149 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 290.4
Tssr21438 2 163062357 to 163062372 15 + TSS region transcription start site region 21438
Tssr21439 2 163062435 to 163062455 20 + TSS region transcription start site region 21439
Tssr21440 2 163063219 to 163063221 2 + TSS region transcription start site region 21440
Mir7003 2 163068090 to 163068155 65 + miRNA gene microRNA 7003
Tssr21441 2 163068213 to 163068222 9 + TSS region transcription start site region 21441
Tssr21442 2 163074631 to 163074654 23 + TSS region transcription start site region 21442
Gtsf1l 2 163087034 to 163087855 821 - protein coding gene gametocyte specific factor 1-like
Tssr27279 2 163087770 to 163087779 9 - TSS region transcription start site region 27279
Tssr27280 2 163087789 to 163087801 12 - TSS region transcription start site region 27280
Tssr27281 2 163087814 to 163087834 20 - TSS region transcription start site region 27281
Tssr27282 2 163089594 to 163089617 23 - TSS region transcription start site region 27282
Gm22174 2 163092899 to 163093023 124 + miRNA gene predicted gene, 22174
Cpgi12627 2 163104553 to 163104777 224 CpG island CpG island 12627
Tssr21443 2 163122605 to 163122620 15 + TSS region transcription start site region 21443
Gm11454 2 163122606 to 163143959 21353 + lincRNA gene predicted gene 11454
Tssr21444 2 163122647 to 163122693 46 + TSS region transcription start site region 21444
Gm14254 2 163152895 to 163156106 3211 - lincRNA gene predicted gene 14254
D2Dcr115 2 163194446 to 163194547 101 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 115
D2Mit226 2 163194446 to 163194546 100 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 226
Cpgi12628 2 163202508 to 163205004 2496 CpG island CpG island 12628
Tox2 2 163202643 to 163323315 120672 + protein coding gene TOX high mobility group box family member 2
Tssr21445 2 163203072 to 163203133 61 + TSS region transcription start site region 21445
Tssr21446 2 163203140 to 163203149 9 + TSS region transcription start site region 21446
Tssr21447 2 163203152 to 163203169 17 + TSS region transcription start site region 21447
Tssr21448 2 163203172 to 163203179 7 + TSS region transcription start site region 21448
Tssr21449 2 163204428 to 163204442 14 + TSS region transcription start site region 21449
Tssr21450 2 163204450 to 163204468 18 + TSS region transcription start site region 21450
Tssr21451 2 163204483 to 163204522 39 + TSS region transcription start site region 21451
Tssr21452 2 163205653 to 163205658 5 + TSS region transcription start site region 21452
D2Dcr125 2 163224706 to 163224807 101 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 125
Tssr21453 2 163225445 to 163225469 24 + TSS region transcription start site region 21453
Tssr21454 2 163225500 to 163225511 11 + TSS region transcription start site region 21454
Cpgi12629 2 163288998 to 163289159 161 CpG island CpG island 12629
Tssr21455 2 163314493 to 163314498 5 + TSS region transcription start site region 21455
Tssr21456 2 163323268 to 163323280 12 + TSS region transcription start site region 21456
Tssr21457 2 163323332 to 163323341 9 + TSS region transcription start site region 21457
Tssr21458 2 163323347 to 163323360 13 + TSS region transcription start site region 21458
Tssr21459 2 163323375 to 163323390 15 + TSS region transcription start site region 21459
Tssr21460 2 163323403 to 163323424 21 + TSS region transcription start site region 21460
Tssr21461 2 163323426 to 163323437 11 + TSS region transcription start site region 21461
Tssr27283 2 163331305 to 163331308 3 - TSS region transcription start site region 27283
D2Mit71 2 163335509 to 163335671 162 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 71
Jph2 2 163336242 to 163397993 61751 - protein coding gene junctophilin 2
Cpgi12630 2 163339005 to 163340095 1090 CpG island CpG island 12630
Gm35750 2 163355055 to 163365260 10205 + lncRNA gene predicted gene, 35750
Tssr27284 2 163357370 to 163357379 9 - TSS region transcription start site region 27284
Cpgi12631 2 163375259 to 163376555 1296 CpG island CpG island 12631
Tssr27285 2 163375412 to 163375427 15 - TSS region transcription start site region 27285
Cpgi12632 2 163397066 to 163397537 471 CpG island CpG island 12632
Tssr27286 2 163397842 to 163397856 14 - TSS region transcription start site region 27286
Tssr27287 2 163397887 to 163397899 12 - TSS region transcription start site region 27287
Tssr27288 2 163397913 to 163397944 31 - TSS region transcription start site region 27288
Tssr27289 2 163397946 to 163398000 54 - TSS region transcription start site region 27289
Oser1 2 163405822 to 163419470 13648 - protein coding gene oxidative stress responsive serine rich 1
Tssr21462 2 163405822 to 163405826 4 + TSS region transcription start site region 21462
Tssr27290 2 163417092 to 163417097 5 - TSS region transcription start site region 27290