Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:162513284-163373776

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115 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Scfq1 2 151799021 to 162895154 11096133 QTL subcutaneous fat pad weight QTL 1
Epfq1 2 151799021 to 162895154 11096133 QTL epididymal fat pad weight QTL 1
Tailq2 2 151799021 to 162895154 11096133 QTL tail length QTL 2
Ptprt 2 161521990 to 162661147 1139157 - protein coding gene protein tyrosine phosphatase, receptor type, T
Tssr27271 2 162644609 to 162644629 20 - TSS region transcription start site region 27271
D2Mit170 2 162654924 to 162655060 136 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 170
Cpgi12617 2 162660159 to 162661693 1534 CpG island CpG island 12617
Tssr27272 2 162661049 to 162661058 9 - TSS region transcription start site region 27272
Tssr27273 2 162661075 to 162661090 15 - TSS region transcription start site region 27273
9430021M05Rik 2 162661163 to 162667109 5946 + lncRNA gene RIKEN cDNA 9430021M05 gene
Tssr21417 2 162661192 to 162661239 47 + TSS region transcription start site region 21417
Tssr21418 2 162661244 to 162661260 16 + TSS region transcription start site region 21418
Tssr21419 2 162661304 to 162661320 16 + TSS region transcription start site region 21419
D2Mit50 2 162676855 to 162677006 151 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 50
Hdlq19 2 162676855 to 162677006 151 QTL HDL QTL 19
Mobq5 2 162677006 to 65439402 -97237604 QTL multigenic obesity QTL 5
Gm14246 2 162679455 to 162680529 1074 + lincRNA gene predicted gene 14246
Gm22936 2 162757309 to 162757434 125 + snoRNA gene predicted gene, 22936
Gm11450 2 162805590 to 162805922 332 + pseudogene predicted gene 11450
Gm24478 2 162816311 to 162816468 157 - snRNA gene predicted gene, 24478
Gm14255 2 162867079 to 162868194 1115 - lincRNA gene predicted gene 14255
Cpgi12618 2 162888431 to 162888699 268 CpG island CpG island 12618
D2Mit49 2 162895006 to 162895154 148 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 49
Epfq2 2 162895006 to 178800659 15905653 QTL epididymal fat pad weight QTL 2
Tailq4 2 162895006 to 178800659 15905653 QTL tail length QTL 4
Gm11451 2 162898894 to 162899523 629 - pseudogene predicted gene 11451
Cpgi12619 2 162899361 to 162899603 242 CpG island CpG island 12619
Gm11452 2 162907924 to 162908613 689 + pseudogene predicted gene 11452
Cpgi12620 2 162908307 to 162908595 288 CpG island CpG island 12620
Gm39978 2 162916670 to 162917894 1224 - lncRNA gene predicted gene, 39978
Cisd3b 2 162919088 to 162923267 4179 - protein coding gene CDGSH iron sulfur domain 3B
Tssr27274 2 162924658 to 162924662 4 - TSS region transcription start site region 27274
Cpgi12621 2 162930913 to 162932454 1541 CpG island CpG island 12621
1700007A02Rik 2 162931266 to 162931443 177 unclassified gene RIKEN cDNA 1700007A02 gene
Tssr21420 2 162931520 to 162931536 16 + TSS region transcription start site region 21420
Srsf6 2 162931528 to 162937121 5593 + protein coding gene serine/arginine-rich splicing factor 6
Tssr27275 2 162932427 to 162932462 35 - TSS region transcription start site region 27275
Cpgi12622 2 162943284 to 162943776 492 CpG island CpG island 12622
L3mbtl1 2 162943472 to 162974522 31050 + protein coding gene L3MBTL1 histone methyl-lysine binding protein
Tssr21421 2 162943484 to 162943516 32 + TSS region transcription start site region 21421
Cpgi12623 2 162947780 to 162948344 564 CpG island CpG island 12623
Gm11453 2 162982255 to 162983261 1006 - pseudogene predicted gene 11453
Sgk2 2 162987330 to 163014127 26797 + protein coding gene serum/glucocorticoid regulated kinase 2
Tssr21422 2 162987427 to 162987436 9 + TSS region transcription start site region 21422
Tssr21423 2 162987442 to 162987449 7 + TSS region transcription start site region 21423
Tssr21424 2 162987474 to 162987486 12 + TSS region transcription start site region 21424
Tssr21425 2 162987504 to 162987509 5 + TSS region transcription start site region 21425
Tssr21426 2 162987519 to 162987537 18 + TSS region transcription start site region 21426
Tssr21427 2 162987547 to 162987560 13 + TSS region transcription start site region 21427
Tssr21428 2 162991587 to 162991598 11 + TSS region transcription start site region 21428
Tssr21429 2 163007460 to 163007463 3 + TSS region transcription start site region 21429
Cpgi12624 2 163016940 to 163017756 816 CpG island CpG island 12624
Ift52 2 163017354 to 163046141 28787 + protein coding gene intraflagellar transport 52
Tssr21430 2 163017450 to 163017513 63 + TSS region transcription start site region 21430
Tssr27276 2 163031427 to 163031438 11 - TSS region transcription start site region 27276
Cpgi12625 2 163048117 to 163048308 191 CpG island CpG island 12625
Cpgi12626 2 163054252 to 163055404 1152 CpG island CpG island 12626
Tssr27277 2 163054407 to 163054420 13 - TSS region transcription start site region 27277
Tssr27278 2 163054443 to 163054454 11 - TSS region transcription start site region 27278
Tssr21431 2 163054570 to 163054583 13 + TSS region transcription start site region 21431
Tssr21432 2 163054591 to 163054649 58 + TSS region transcription start site region 21432
Tssr21433 2 163054651 to 163054677 26 + TSS region transcription start site region 21433
Tssr21434 2 163054682 to 163054693 11 + TSS region transcription start site region 21434
Mybl2 2 163054687 to 163084688 30001 + protein coding gene myeloblastosis oncogene-like 2
Tssr21435 2 163059167 to 163059193 26 + TSS region transcription start site region 21435
Tssr21436 2 163059208 to 163059219 11 + TSS region transcription start site region 21436
Tssr21437 2 163059396 to 163059418 22 + TSS region transcription start site region 21437
D2Mit290 2 163060474 to 163060662 188 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 290
D2Mit290.4 2 163060619 to 163060768 149 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 290.4
Tssr21438 2 163062357 to 163062372 15 + TSS region transcription start site region 21438
Tssr21439 2 163062435 to 163062455 20 + TSS region transcription start site region 21439
Tssr21440 2 163063219 to 163063221 2 + TSS region transcription start site region 21440
Mir7003 2 163068090 to 163068155 65 + miRNA gene microRNA 7003
Tssr21441 2 163068213 to 163068222 9 + TSS region transcription start site region 21441
Tssr21442 2 163074631 to 163074654 23 + TSS region transcription start site region 21442
Gtsf1l 2 163087034 to 163087855 821 - protein coding gene gametocyte specific factor 1-like
Tssr27279 2 163087770 to 163087779 9 - TSS region transcription start site region 27279
Tssr27280 2 163087789 to 163087801 12 - TSS region transcription start site region 27280
Tssr27281 2 163087814 to 163087834 20 - TSS region transcription start site region 27281
Tssr27282 2 163089594 to 163089617 23 - TSS region transcription start site region 27282
Gm22174 2 163092899 to 163093023 124 + miRNA gene predicted gene, 22174
Cpgi12627 2 163104553 to 163104777 224 CpG island CpG island 12627
Tssr21443 2 163122605 to 163122620 15 + TSS region transcription start site region 21443
Gm11454 2 163122606 to 163143959 21353 + lincRNA gene predicted gene 11454
Tssr21444 2 163122647 to 163122693 46 + TSS region transcription start site region 21444
Gm14254 2 163152895 to 163156106 3211 - lincRNA gene predicted gene 14254
D2Mit226 2 163194446 to 163194546 100 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 226
D2Dcr115 2 163194446 to 163194547 101 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 115
Cpgi12628 2 163202508 to 163205004 2496 CpG island CpG island 12628
Tox2 2 163202643 to 163323315 120672 + protein coding gene TOX high mobility group box family member 2
Tssr21445 2 163203072 to 163203133 61 + TSS region transcription start site region 21445
Tssr21446 2 163203140 to 163203149 9 + TSS region transcription start site region 21446
Tssr21447 2 163203152 to 163203169 17 + TSS region transcription start site region 21447
Tssr21448 2 163203172 to 163203179 7 + TSS region transcription start site region 21448
Tssr21449 2 163204428 to 163204442 14 + TSS region transcription start site region 21449
Tssr21450 2 163204450 to 163204468 18 + TSS region transcription start site region 21450
Tssr21451 2 163204483 to 163204522 39 + TSS region transcription start site region 21451
Tssr21452 2 163205653 to 163205658 5 + TSS region transcription start site region 21452
D2Dcr125 2 163224706 to 163224807 101 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 125
Tssr21453 2 163225445 to 163225469 24 + TSS region transcription start site region 21453
Tssr21454 2 163225500 to 163225511 11 + TSS region transcription start site region 21454
Cpgi12629 2 163288998 to 163289159 161 CpG island CpG island 12629
Tssr21455 2 163314493 to 163314498 5 + TSS region transcription start site region 21455
Tssr21456 2 163323268 to 163323280 12 + TSS region transcription start site region 21456
Tssr21457 2 163323332 to 163323341 9 + TSS region transcription start site region 21457
Tssr21458 2 163323347 to 163323360 13 + TSS region transcription start site region 21458
Tssr21459 2 163323375 to 163323390 15 + TSS region transcription start site region 21459
Tssr21460 2 163323403 to 163323424 21 + TSS region transcription start site region 21460
Tssr21461 2 163323426 to 163323437 11 + TSS region transcription start site region 21461
Tssr27283 2 163331305 to 163331308 3 - TSS region transcription start site region 27283
D2Mit71 2 163335509 to 163335671 162 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 71
Jph2 2 163336242 to 163397993 61751 - protein coding gene junctophilin 2
Cpgi12630 2 163339005 to 163340095 1090 CpG island CpG island 12630
Gm35750 2 163355055 to 163365260 10205 + lncRNA gene predicted gene, 35750
Tssr27284 2 163357370 to 163357379 9 - TSS region transcription start site region 27284