Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:160899863-162139867

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40 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lpin3 2 160880670 to 160906000 25330 + protein coding gene lipin 3
Emilin3 2 160906437 to 160912328 5891 - protein coding gene elastin microfibril interfacer 3
Cpgi12613 2 160911503 to 160912868 1365 CpG island CpG island 12613
Tssr27258 2 160912292 to 160912344 52 - TSS region transcription start site region 27258
Tssr27259 2 160912349 to 160912355 6 - TSS region transcription start site region 27259
Gm35181 2 160912610 to 160925695 13085 + lncRNA gene predicted gene, 35181
Gm14228 2 160925541 to 160926648 1107 - lincRNA gene predicted gene 14228
Chd6 2 160946978 to 161109075 162097 - protein coding gene chromodomain helicase DNA binding protein 6
Tssr27260 2 160950666 to 160950670 4 - TSS region transcription start site region 27260
Tssr27261 2 160961371 to 160961380 9 - TSS region transcription start site region 27261
Tssr27262 2 160981676 to 160981687 11 - TSS region transcription start site region 27262
Tssr27263 2 160982698 to 160982709 11 - TSS region transcription start site region 27263
Tssr27264 2 160982718 to 160982730 12 - TSS region transcription start site region 27264
Tssr27265 2 160982737 to 160982764 27 - TSS region transcription start site region 27265
Tssr27266 2 160989303 to 160989305 2 - TSS region transcription start site region 27266
Gm25561 2 160996777 to 160996901 124 + snoRNA gene predicted gene, 25561
Tssr21414 2 161004621 to 161004634 13 + TSS region transcription start site region 21414
Cpgi12614 2 161108108 to 161109796 1688 CpG island CpG island 12614
Tssr27267 2 161109017 to 161109027 10 - TSS region transcription start site region 27267
Tssr27268 2 161109036 to 161109091 55 - TSS region transcription start site region 27268
Tssr27269 2 161109194 to 161109199 5 - TSS region transcription start site region 27269
Gm45447 2 161109411 to 161114858 5447 + antisense lncRNA gene predicted gene 45447
D2Mit509 2 161156924 to 161157073 149 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology-509
Gm14243 2 161179064 to 161216577 37513 + lincRNA gene predicted gene 14243
Gm14242 2 161206689 to 161207280 591 - lincRNA gene predicted gene 14242
Gm5270 2 161254456 to 161255457 1001 - pseudogene predicted gene 5270
Gm11448 2 161287220 to 161287669 449 + pseudogene predicted gene 11448
Gm14241 2 161331314 to 161332253 939 + lincRNA gene predicted gene 14241
Cpgi12615 2 161341803 to 161341984 181 CpG island CpG island 12615
Tssr731 2 161354861 to 161354865 4 + TSS region transcription start site region 731
Gm35374 2 161391182 to 161412619 21437 + lncRNA gene predicted gene, 35374
Gm11449 2 161482563 to 161483038 475 - pseudogene predicted gene 11449
Gm29229 2 161513690 to 161514012 322 - unclassified non-coding RNA gene predicted gene 29229
Tssr27270 2 161519863 to 161519867 4 - TSS region transcription start site region 27270
Ptprt 2 161521990 to 162661147 1139157 - protein coding gene protein tyrosine phosphatase, receptor type, T
Tssr21415 2 161537136 to 161537138 2 + TSS region transcription start site region 21415
D2Mit197 2 161538069 to 161538215 146 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 197
D2Mit142 2 161591854 to 161591971 117 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 142
D2Mit497 2 161733481 to 161733729 248 DNA segment DNA Segment, Chr 2 Massachusetts Institute of Technology 497
Tssr21416 2 162045298 to 162045299 1 + TSS region transcription start site region 21416