Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:159966254-160766284

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66 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Wg2d 2 143931525 to 160461088 16529563 QTL weight gain in high growth mice 2d
Agoc2 2 152000000 to 160000000 8000000 QTL agouti coat color QTL 2
4933416E03Rik 2 159947341 to 159981288 33947 + lncRNA gene RIKEN cDNA 4933416E03 gene
Gm14220 2 159978274 to 159978722 448 + pseudogene predicted gene 14220
9130015L21Rik 2 160016653 to 160040619 23966 + lincRNA gene RIKEN cDNA 9130015L21 gene
D2Mit410 2 160069467 to 160069585 118 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 410
Gm34741 2 160155226 to 160169665 14439 - lncRNA gene predicted gene, 34741
Tssr21380 2 160210776 to 160210804 28 + TSS region transcription start site region 21380
Gm34805 2 160213958 to 160252262 38304 - lncRNA gene predicted gene, 34805
Gm46773 2 160260334 to 160361096 100762 - protein coding gene predicted gene, 46773
Gm826 2 160311393 to 160334162 22769 - protein coding gene predicted gene 826
Tssr27236 2 160327169 to 160327192 23 - TSS region transcription start site region 27236
Tssr27237 2 160334111 to 160334122 11 - TSS region transcription start site region 27237
Mafb 2 160363703 to 160367065 3362 - protein coding gene v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)
Tssr21381 2 160364460 to 160364500 40 + TSS region transcription start site region 21381
Tssr27238 2 160364585 to 160364628 43 - TSS region transcription start site region 27238
Tssr27239 2 160364733 to 160364750 17 - TSS region transcription start site region 27239
Tssr730 2 160364882 to 160364895 13 - TSS region transcription start site region 730
Cpgi12607 2 160365149 to 160369408 4259 CpG island CpG island 12607
Tssr21382 2 160365779 to 160365808 29 + TSS region transcription start site region 21382
Tssr21383 2 160366230 to 160366244 14 + TSS region transcription start site region 21383
Tssr21384 2 160366254 to 160366284 30 + TSS region transcription start site region 21384
Tssr27240 2 160367057 to 160367073 16 - TSS region transcription start site region 27240
Tssr21385 2 160367345 to 160367357 12 + TSS region transcription start site region 21385
Tssr27241 2 160367940 to 160367951 11 - TSS region transcription start site region 27241
Cpgi12608 2 160370279 to 160370686 407 CpG island CpG island 12608
Gm34980 2 160374661 to 160381860 7199 + lncRNA gene predicted gene, 34980
Tssr21386 2 160394511 to 160394534 23 + TSS region transcription start site region 21386
D2Mit196 2 160460945 to 160461088 143 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 196
D2Dcr114 2 160460991 to 160461108 117 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 114
D2Mit453 2 160497254 to 160497367 113 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 453
Gm14221 2 160567634 to 160580769 13135 - lincRNA gene predicted gene 14221
Gm14222 2 160583357 to 160585191 1834 + sense intronic lncRNA gene predicted gene 14222
Tssr21387 2 160583396 to 160583400 4 + TSS region transcription start site region 21387
Tssr27242 2 160619941 to 160619976 35 - TSS region transcription start site region 27242
Gm23968 2 160624468 to 160624592 124 + miRNA gene predicted gene, 23968
Cpgi12609 2 160645533 to 160647071 1538 CpG island CpG island 12609
Tssr21388 2 160645881 to 160645896 15 + TSS region transcription start site region 21388
Top1 2 160645897 to 160722764 76867 + protein coding gene topoisomerase (DNA) I
Tssr21389 2 160645971 to 160645993 22 + TSS region transcription start site region 21389
Tssr21390 2 160645996 to 160646007 11 + TSS region transcription start site region 21390
Tssr21391 2 160646011 to 160646026 15 + TSS region transcription start site region 21391
Tssr21392 2 160646038 to 160646057 19 + TSS region transcription start site region 21392
Tssr27243 2 160646564 to 160646570 6 - TSS region transcription start site region 27243
Tssr27244 2 160650105 to 160650110 5 - TSS region transcription start site region 27244
Tssr27245 2 160656222 to 160656238 16 - TSS region transcription start site region 27245
D2Ertd122e 2 160666817 to 160667052 235 DNA segment DNA segment, Chr 2, ERATO Doi 122, expressed
Tssr21393 2 160667875 to 160667881 6 + TSS region transcription start site region 21393
Tssr21394 2 160670119 to 160670172 53 + TSS region transcription start site region 21394
Tssr21395 2 160670174 to 160670182 8 + TSS region transcription start site region 21395
D2Mit143 2 160671690 to 160671788 98 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 143
Tssr27246 2 160682722 to 160682780 58 - TSS region transcription start site region 27246
Tssr21396 2 160687670 to 160687700 30 + TSS region transcription start site region 21396
Tssr21397 2 160698170 to 160698197 27 + TSS region transcription start site region 21397
Tssr21398 2 160699607 to 160699611 4 + TSS region transcription start site region 21398
Cpgi12610 2 160730625 to 160732443 1818 CpG island CpG island 12610
Tssr21399 2 160731258 to 160731300 42 + TSS region transcription start site region 21399
Plcg1 2 160731310 to 160775760 44450 + protein coding gene phospholipase C, gamma 1
Tssr21400 2 160731684 to 160731760 76 + TSS region transcription start site region 21400
Tssr21401 2 160731776 to 160731796 20 + TSS region transcription start site region 21401
Tssr21402 2 160732635 to 160732638 3 + TSS region transcription start site region 21402
Tssr21403 2 160740991 to 160740998 7 + TSS region transcription start site region 21403
Gm27206 2 160743927 to 160751909 7982 - antisense lncRNA gene predicted gene 27206
Tssr21404 2 160747329 to 160747341 12 + TSS region transcription start site region 21404
Tssr21405 2 160747372 to 160747387 15 + TSS region transcription start site region 21405
Tssr21406 2 160757156 to 160757166 10 + TSS region transcription start site region 21406