Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:158720698-163040726

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233 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pwbwq1 2 118758772 to 160769245 42010473 QTL pre-weaning body weight QTL 1
Pwgrq2 2 118758772 to 160769245 42010473 QTL pre-weaning growth rate QTL 2
Pwgrq1 2 118758772 to 160769245 42010473 QTL pre-weaning growth rate QTL 1
Pwbwq5 2 118758772 to 160769245 42010473 QTL post-weaning body weight QTL 5
Wg2d 2 143931525 to 160461088 16529563 QTL weight gain in high growth mice 2d
Scfq1 2 151799021 to 162895154 11096133 QTL subcutaneous fat pad weight QTL 1
Epfq1 2 151799021 to 162895154 11096133 QTL epididymal fat pad weight QTL 1
Tailq2 2 151799021 to 162895154 11096133 QTL tail length QTL 2
Agoc2 2 152000000 to 160000000 8000000 QTL agouti coat color QTL 2
Gnf2 2 152857301 to 162355165 9497864 QTL growth and fatness 2
Hrec 2 154711297 to 159586530 4875233 QTL hemotopoietic response to early cytokines
Ppp1r16b 2 158666733 to 158766334 99601 + protein coding gene protein phosphatase 1, regulatory subunit 16B
Tssr21375 2 158723439 to 158723450 11 + TSS region transcription start site region 21375
Tssr21376 2 158723455 to 158723467 12 + TSS region transcription start site region 21376
Gm26141 2 158740138 to 158740263 125 + miRNA gene predicted gene, 26141
Tssr21377 2 158762118 to 158762137 19 + TSS region transcription start site region 21377
Cpgi12605 2 158767740 to 158768707 967 CpG island CpG island 12605
Tssr21378 2 158768083 to 158768099 16 + TSS region transcription start site region 21378
Fam83d 2 158768099 to 158786637 18538 + protein coding gene family with sequence similarity 83, member D
Cpgi12606 2 158794393 to 158795409 1016 CpG island CpG island 12606
Dhx35 2 158794807 to 158858214 63407 + protein coding gene DEAH (Asp-Glu-Ala-His) box polypeptide 35
Tssr21379 2 158794853 to 158794892 39 + TSS region transcription start site region 21379
3010023C09Rik 2 158858819 to 158859641 822 unclassified gene RIKEN cDNA 3010023C09 gene
Gm38630 2 158909272 to 158965525 56253 + lncRNA gene predicted gene, 38630
Gm44319 2 159069863 to 159069955 92 + miRNA gene predicted gene, 44319
Gm25090 2 159139361 to 159139492 131 + snoRNA gene predicted gene, 25090
D2Mit341 2 159274941 to 159275163 222 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 341
Tssr729 2 159354449 to 159354453 4 + TSS region transcription start site region 729
D2Dcr113 2 159430118 to 159430237 119 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 113
D2Mit287 2 159430119 to 159430251 132 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 287
Gm14219 2 159456170 to 159456457 287 - pseudogene predicted gene 14219
Intim1 2 159586427 to 159586530 103 QTL intima modifier 1
Intmrm1 2 159586427 to 159586530 103 QTL intima/media ratio modifier 1
D2Mit411 2 159586427 to 159586530 103 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 411
Mdq18 2 159752856 to 159752856 0 QTL mammary ductal QTL 18
Gm11445 2 159777676 to 159778207 531 - pseudogene predicted gene 11445
Gm11446 2 159858537 to 159859339 802 - pseudogene predicted gene 11446
Gm14223 2 159911773 to 159947376 35603 - lincRNA gene predicted gene 14223
4933416E03Rik 2 159947341 to 159981288 33947 + lncRNA gene RIKEN cDNA 4933416E03 gene
Gm14220 2 159978274 to 159978722 448 + pseudogene predicted gene 14220
9130015L21Rik 2 160016653 to 160040619 23966 + lincRNA gene RIKEN cDNA 9130015L21 gene
D2Mit410 2 160069467 to 160069585 118 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 410
Gm34741 2 160155226 to 160169665 14439 - lncRNA gene predicted gene, 34741
Tssr21380 2 160210776 to 160210804 28 + TSS region transcription start site region 21380
Gm34805 2 160213958 to 160252262 38304 - lncRNA gene predicted gene, 34805
Gm46773 2 160260334 to 160361096 100762 - protein coding gene predicted gene, 46773
Gm826 2 160311393 to 160334162 22769 - protein coding gene predicted gene 826
Tssr27236 2 160327169 to 160327192 23 - TSS region transcription start site region 27236
Tssr27237 2 160334111 to 160334122 11 - TSS region transcription start site region 27237
Mafb 2 160363703 to 160367065 3362 - protein coding gene v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)
Tssr21381 2 160364460 to 160364500 40 + TSS region transcription start site region 21381
Tssr27238 2 160364585 to 160364628 43 - TSS region transcription start site region 27238
Tssr27239 2 160364733 to 160364750 17 - TSS region transcription start site region 27239
Tssr730 2 160364882 to 160364895 13 - TSS region transcription start site region 730
Cpgi12607 2 160365149 to 160369408 4259 CpG island CpG island 12607
Tssr21382 2 160365779 to 160365808 29 + TSS region transcription start site region 21382
Tssr21383 2 160366230 to 160366244 14 + TSS region transcription start site region 21383
Tssr21384 2 160366254 to 160366284 30 + TSS region transcription start site region 21384
Tssr27240 2 160367057 to 160367073 16 - TSS region transcription start site region 27240
Tssr21385 2 160367345 to 160367357 12 + TSS region transcription start site region 21385
Tssr27241 2 160367940 to 160367951 11 - TSS region transcription start site region 27241
Cpgi12608 2 160370279 to 160370686 407 CpG island CpG island 12608
Gm34980 2 160374661 to 160381860 7199 + lncRNA gene predicted gene, 34980
Tssr21386 2 160394511 to 160394534 23 + TSS region transcription start site region 21386
D2Mit196 2 160460945 to 160461088 143 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 196
D2Dcr114 2 160460991 to 160461108 117 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 114
D2Mit453 2 160497254 to 160497367 113 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 453
Gm14221 2 160567634 to 160580769 13135 - lincRNA gene predicted gene 14221
Gm14222 2 160583357 to 160585191 1834 + sense intronic lncRNA gene predicted gene 14222
Tssr21387 2 160583396 to 160583400 4 + TSS region transcription start site region 21387
Tssr27242 2 160619941 to 160619976 35 - TSS region transcription start site region 27242
Gm23968 2 160624468 to 160624592 124 + miRNA gene predicted gene, 23968
Cpgi12609 2 160645533 to 160647071 1538 CpG island CpG island 12609
Tssr21388 2 160645881 to 160645896 15 + TSS region transcription start site region 21388
Top1 2 160645897 to 160722764 76867 + protein coding gene topoisomerase (DNA) I
Tssr21389 2 160645971 to 160645993 22 + TSS region transcription start site region 21389
Tssr21390 2 160645996 to 160646007 11 + TSS region transcription start site region 21390
Tssr21391 2 160646011 to 160646026 15 + TSS region transcription start site region 21391
Tssr21392 2 160646038 to 160646057 19 + TSS region transcription start site region 21392
Tssr27243 2 160646564 to 160646570 6 - TSS region transcription start site region 27243
Tssr27244 2 160650105 to 160650110 5 - TSS region transcription start site region 27244
Tssr27245 2 160656222 to 160656238 16 - TSS region transcription start site region 27245
D2Ertd122e 2 160666817 to 160667052 235 DNA segment DNA segment, Chr 2, ERATO Doi 122, expressed
Tssr21393 2 160667875 to 160667881 6 + TSS region transcription start site region 21393
Tssr21394 2 160670119 to 160670172 53 + TSS region transcription start site region 21394
Tssr21395 2 160670174 to 160670182 8 + TSS region transcription start site region 21395
D2Mit143 2 160671690 to 160671788 98 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 143
Tssr27246 2 160682722 to 160682780 58 - TSS region transcription start site region 27246
Tssr21396 2 160687670 to 160687700 30 + TSS region transcription start site region 21396
Tssr21397 2 160698170 to 160698197 27 + TSS region transcription start site region 21397
Tssr21398 2 160699607 to 160699611 4 + TSS region transcription start site region 21398
Cpgi12610 2 160730625 to 160732443 1818 CpG island CpG island 12610
Tssr21399 2 160731258 to 160731300 42 + TSS region transcription start site region 21399
Plcg1 2 160731310 to 160775760 44450 + protein coding gene phospholipase C, gamma 1
Tssr21400 2 160731684 to 160731760 76 + TSS region transcription start site region 21400
Tssr21401 2 160731776 to 160731796 20 + TSS region transcription start site region 21401
Tssr21402 2 160732635 to 160732638 3 + TSS region transcription start site region 21402
Tssr21403 2 160740991 to 160740998 7 + TSS region transcription start site region 21403
Gm27206 2 160743927 to 160751909 7982 - antisense lncRNA gene predicted gene 27206
Tssr21404 2 160747329 to 160747341 12 + TSS region transcription start site region 21404
Tssr21405 2 160747372 to 160747387 15 + TSS region transcription start site region 21405
Tssr21406 2 160757156 to 160757166 10 + TSS region transcription start site region 21406
Pwgrq3 2 160769245 to 169952882 9183637 QTL pre-weaning growth rate QTL 3
Pwbwq2 2 160769245 to 169952882 9183637 QTL pre-weaning body weight QTL 2
Tssr27247 2 160769954 to 160769957 3 - TSS region transcription start site region 27247
Zhx3 2 160770447 to 160872990 102543 - protein coding gene zinc fingers and homeoboxes 3
Tssr21407 2 160797166 to 160797176 10 + TSS region transcription start site region 21407
Tssr27248 2 160816669 to 160816674 5 - TSS region transcription start site region 27248
Gm16751 2 160840836 to 160888028 47192 - antisense lncRNA gene predicted gene, 16751
Gm11447 2 160845613 to 160846470 857 + pseudogene predicted gene 11447
Tssr27249 2 160859601 to 160859630 29 - TSS region transcription start site region 27249
Tssr27250 2 160859632 to 160859639 7 - TSS region transcription start site region 27250
Tssr27251 2 160860235 to 160860239 4 - TSS region transcription start site region 27251
Cpgi12611 2 160871998 to 160873397 1399 CpG island CpG island 12611
Tssr27252 2 160872552 to 160872622 70 - TSS region transcription start site region 27252
Tssr27253 2 160872932 to 160872943 11 - TSS region transcription start site region 27253
Tssr27254 2 160872945 to 160872972 27 - TSS region transcription start site region 27254
Tssr27255 2 160872985 to 160873009 24 - TSS region transcription start site region 27255
Gm35129 2 160873152 to 160879549 6397 + lncRNA gene predicted gene, 35129
Tssr27256 2 160874398 to 160874424 26 - TSS region transcription start site region 27256
Tssr21408 2 160880642 to 160880650 8 + TSS region transcription start site region 21408
Lpin3 2 160880670 to 160906000 25330 + protein coding gene lipin 3
Tssr21409 2 160880698 to 160880726 28 + TSS region transcription start site region 21409
Tssr21410 2 160880728 to 160880747 19 + TSS region transcription start site region 21410
Cpgi12612 2 160887448 to 160888277 829 CpG island CpG island 12612
Tssr27257 2 160888035 to 160888043 8 - TSS region transcription start site region 27257
Tssr21411 2 160888101 to 160888113 12 + TSS region transcription start site region 21411
Tssr21412 2 160888156 to 160888199 43 + TSS region transcription start site region 21412
Tssr21413 2 160891973 to 160891999 26 + TSS region transcription start site region 21413
Emilin3 2 160906437 to 160912328 5891 - protein coding gene elastin microfibril interfacer 3
Cpgi12613 2 160911503 to 160912868 1365 CpG island CpG island 12613
Tssr27258 2 160912292 to 160912344 52 - TSS region transcription start site region 27258
Tssr27259 2 160912349 to 160912355 6 - TSS region transcription start site region 27259
Gm35181 2 160912610 to 160925695 13085 + lncRNA gene predicted gene, 35181
Gm14228 2 160925541 to 160926648 1107 - lincRNA gene predicted gene 14228
Chd6 2 160946978 to 161109075 162097 - protein coding gene chromodomain helicase DNA binding protein 6
Tssr27260 2 160950666 to 160950670 4 - TSS region transcription start site region 27260
Tssr27261 2 160961371 to 160961380 9 - TSS region transcription start site region 27261
Tssr27262 2 160981676 to 160981687 11 - TSS region transcription start site region 27262
Tssr27263 2 160982698 to 160982709 11 - TSS region transcription start site region 27263
Tssr27264 2 160982718 to 160982730 12 - TSS region transcription start site region 27264
Tssr27265 2 160982737 to 160982764 27 - TSS region transcription start site region 27265
Tssr27266 2 160989303 to 160989305 2 - TSS region transcription start site region 27266
Gm25561 2 160996777 to 160996901 124 + snoRNA gene predicted gene, 25561
Tssr21414 2 161004621 to 161004634 13 + TSS region transcription start site region 21414
Cpgi12614 2 161108108 to 161109796 1688 CpG island CpG island 12614
Tssr27267 2 161109017 to 161109027 10 - TSS region transcription start site region 27267
Tssr27268 2 161109036 to 161109091 55 - TSS region transcription start site region 27268
Tssr27269 2 161109194 to 161109199 5 - TSS region transcription start site region 27269
Gm45447 2 161109411 to 161114858 5447 + antisense lncRNA gene predicted gene 45447
D2Mit509 2 161156924 to 161157073 149 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology-509
Gm14243 2 161179064 to 161216577 37513 + lincRNA gene predicted gene 14243
Gm14242 2 161206689 to 161207280 591 - lincRNA gene predicted gene 14242
Gm5270 2 161254456 to 161255457 1001 - pseudogene predicted gene 5270
Gm11448 2 161287220 to 161287669 449 + pseudogene predicted gene 11448
Gm14241 2 161331314 to 161332253 939 + lincRNA gene predicted gene 14241
Cpgi12615 2 161341803 to 161341984 181 CpG island CpG island 12615
Tssr731 2 161354861 to 161354865 4 + TSS region transcription start site region 731
Gm35374 2 161391182 to 161412619 21437 + lncRNA gene predicted gene, 35374
Gm11449 2 161482563 to 161483038 475 - pseudogene predicted gene 11449
Gm29229 2 161513690 to 161514012 322 - unclassified non-coding RNA gene predicted gene 29229
Tssr27270 2 161519863 to 161519867 4 - TSS region transcription start site region 27270
Ptprt 2 161521990 to 162661147 1139157 - protein coding gene protein tyrosine phosphatase, receptor type, T
Tssr21415 2 161537136 to 161537138 2 + TSS region transcription start site region 21415
D2Mit197 2 161538069 to 161538215 146 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 197
D2Mit142 2 161591854 to 161591971 117 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 142
D2Mit497 2 161733481 to 161733729 248 DNA segment DNA Segment, Chr 2 Massachusetts Institute of Technology 497
Tssr21416 2 162045298 to 162045299 1 + TSS region transcription start site region 21416
D2Mit310 2 162195537 to 162195674 137 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 310
Tssr732 2 162253176 to 162253177 1 + TSS region transcription start site region 732
D2Mit412 2 162344842 to 162344966 124 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 412
D2Mit263.3 2 162354946 to 162355057 111 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 263.3
D2Mit263 2 162355029 to 162355165 136 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 263
Tbbmd3 2 162355029 to 162355165 136 QTL total body bone mineral density 3
D2Mit452.2 2 162386681 to 162386823 142 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 452.2
D2Mit452 2 162386799 to 162386921 122 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 452
Aod4 2 162386799 to 162386921 122 QTL autoimmune ovarian dysgenesis 4
Ptprtos 2 162390813 to 162393945 3132 + antisense lncRNA gene protein tyrosine phosphatase, receptor type T, opposite strand
Tssr733 2 162392391 to 162392393 2 + TSS region transcription start site region 733
D2Dcr124 2 162452335 to 162452432 97 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 124
Cpgi12616 2 162485599 to 162485943 344 CpG island CpG island 12616
Gm46774 2 162491060 to 162497812 6752 - lncRNA gene predicted gene, 46774
Tssr27271 2 162644609 to 162644629 20 - TSS region transcription start site region 27271
D2Mit170 2 162654924 to 162655060 136 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 170
Cpgi12617 2 162660159 to 162661693 1534 CpG island CpG island 12617
Tssr27272 2 162661049 to 162661058 9 - TSS region transcription start site region 27272
Tssr27273 2 162661075 to 162661090 15 - TSS region transcription start site region 27273
9430021M05Rik 2 162661163 to 162667109 5946 + lncRNA gene RIKEN cDNA 9430021M05 gene
Tssr21417 2 162661192 to 162661239 47 + TSS region transcription start site region 21417
Tssr21418 2 162661244 to 162661260 16 + TSS region transcription start site region 21418
Tssr21419 2 162661304 to 162661320 16 + TSS region transcription start site region 21419
Hdlq19 2 162676855 to 162677006 151 QTL HDL QTL 19
D2Mit50 2 162676855 to 162677006 151 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 50
Mobq5 2 162677006 to 65439402 -97237604 QTL multigenic obesity QTL 5
Gm14246 2 162679455 to 162680529 1074 + lincRNA gene predicted gene 14246
Gm22936 2 162757309 to 162757434 125 + snoRNA gene predicted gene, 22936
Gm11450 2 162805590 to 162805922 332 + pseudogene predicted gene 11450
Gm24478 2 162816311 to 162816468 157 - snRNA gene predicted gene, 24478
Gm14255 2 162867079 to 162868194 1115 - lincRNA gene predicted gene 14255
Cpgi12618 2 162888431 to 162888699 268 CpG island CpG island 12618