Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:158433819-159284641

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73 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ralgapb 2 158409848 to 158499253 89405 + protein coding gene Ral GTPase activating protein, beta subunit (non-catalytic)
Tssr21346 2 158436996 to 158437016 20 + TSS region transcription start site region 21346
Tssr21347 2 158437024 to 158437041 17 + TSS region transcription start site region 21347
Tssr21348 2 158439837 to 158439841 4 + TSS region transcription start site region 21348
Gm14200 2 158468169 to 158468360 191 - pseudogene predicted gene 14200
Gm24379 2 158487602 to 158487687 85 + unclassified non-coding RNA gene predicted gene, 24379
Tssr21349 2 158487945 to 158487948 3 + TSS region transcription start site region 21349
Tssr21350 2 158502537 to 158502552 15 + TSS region transcription start site region 21350
Tssr21351 2 158502577 to 158502586 9 + TSS region transcription start site region 21351
Adig 2 158502612 to 158508198 5586 + protein coding gene adipogenin
Tssr21352 2 158502615 to 158502632 17 + TSS region transcription start site region 21352
Tssr21353 2 158502633 to 158502698 65 + TSS region transcription start site region 21353
Tssr21354 2 158502708 to 158502720 12 + TSS region transcription start site region 21354
D2Mit409 2 158504556 to 158504654 98 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 409
Tssr21355 2 158512747 to 158512771 24 + TSS region transcription start site region 21355
Arhgap40 2 158512796 to 158550628 37832 + protein coding gene Rho GTPase activating protein 40
Tssr21356 2 158512805 to 158512812 7 + TSS region transcription start site region 21356
Cpgi12596 2 158539730 to 158539984 254 CpG island CpG island 12596
Cpgi12597 2 158556058 to 158556497 439 CpG island CpG island 12597
Gm14204 2 158595472 to 158610723 15251 - lncRNA gene predicted gene 14204
Tssr27229 2 158606635 to 158606639 4 - TSS region transcription start site region 27229
Tssr21357 2 158609601 to 158609612 11 + TSS region transcription start site region 21357
Cpgi12598 2 158609691 to 158611777 2086 CpG island CpG island 12598
Tssr27230 2 158610566 to 158610580 14 - TSS region transcription start site region 27230
Tssr27231 2 158610591 to 158610615 24 - TSS region transcription start site region 27231
Tssr27232 2 158610628 to 158610648 20 - TSS region transcription start site region 27232
Tssr27233 2 158610657 to 158610665 8 - TSS region transcription start site region 27233
Tssr21358 2 158610731 to 158610787 56 + TSS region transcription start site region 21358
Slc32a1 2 158610767 to 158615748 4981 + protein coding gene solute carrier family 32 (GABA vesicular transporter), member 1
Gm14205 2 158610910 to 158611820 910 - antisense lncRNA gene predicted gene 14205
Tssr21359 2 158610964 to 158610971 7 + TSS region transcription start site region 21359
Tssr21360 2 158610978 to 158611048 70 + TSS region transcription start site region 21360
Tssr21361 2 158611071 to 158611074 3 + TSS region transcription start site region 21361
Cpgi12599 2 158612052 to 158612435 383 CpG island CpG island 12599
Cpgi12600 2 158613668 to 158615356 1688 CpG island CpG island 12600
Tssr21362 2 158614377 to 158614391 14 + TSS region transcription start site region 21362
Cpgi12601 2 158624673 to 158625672 999 CpG island CpG island 12601
Tssr21363 2 158624882 to 158624896 14 + TSS region transcription start site region 21363
Actr5 2 158624888 to 158639211 14323 + protein coding gene ARP5 actin-related protein 5
Tssr21364 2 158624903 to 158624930 27 + TSS region transcription start site region 21364
Tssr21365 2 158624945 to 158624950 5 + TSS region transcription start site region 21365
Tssr27234 2 158625246 to 158625254 8 - TSS region transcription start site region 27234
Mir3474 2 158638583 to 158638640 57 + miRNA gene microRNA 3474
Tssr728 2 158666398 to 158666439 41 + TSS region transcription start site region 728
Tssr21366 2 158666597 to 158666646 49 + TSS region transcription start site region 21366
Tssr21367 2 158666658 to 158666672 14 + TSS region transcription start site region 21367
Tssr21368 2 158666690 to 158666740 50 + TSS region transcription start site region 21368
Ppp1r16b 2 158666733 to 158766334 99601 + protein coding gene protein phosphatase 1, regulatory subunit 16B
Tssr21369 2 158666743 to 158666752 9 + TSS region transcription start site region 21369
Cpgi12602 2 158667022 to 158668425 1403 CpG island CpG island 12602
Tssr21370 2 158667119 to 158667130 11 + TSS region transcription start site region 21370
Tssr21371 2 158667131 to 158667186 55 + TSS region transcription start site region 21371
Tssr21372 2 158667191 to 158667194 3 + TSS region transcription start site region 21372
Tssr21373 2 158668078 to 158668117 39 + TSS region transcription start site region 21373
Cpgi12603 2 158668558 to 158668825 267 CpG island CpG island 12603
Tssr27235 2 158668753 to 158668759 6 - TSS region transcription start site region 27235
Cpgi12604 2 158695944 to 158696301 357 CpG island CpG island 12604
Tssr21374 2 158700971 to 158700972 1 + TSS region transcription start site region 21374
Tssr21375 2 158723439 to 158723450 11 + TSS region transcription start site region 21375
Tssr21376 2 158723455 to 158723467 12 + TSS region transcription start site region 21376
Gm26141 2 158740138 to 158740263 125 + miRNA gene predicted gene, 26141
Tssr21377 2 158762118 to 158762137 19 + TSS region transcription start site region 21377
Cpgi12605 2 158767740 to 158768707 967 CpG island CpG island 12605
Tssr21378 2 158768083 to 158768099 16 + TSS region transcription start site region 21378
Fam83d 2 158768099 to 158786637 18538 + protein coding gene family with sequence similarity 83, member D
Cpgi12606 2 158794393 to 158795409 1016 CpG island CpG island 12606
Dhx35 2 158794807 to 158858214 63407 + protein coding gene DEAH (Asp-Glu-Ala-His) box polypeptide 35
Tssr21379 2 158794853 to 158794892 39 + TSS region transcription start site region 21379
3010023C09Rik 2 158858819 to 158859641 822 unclassified gene RIKEN cDNA 3010023C09 gene
Gm38630 2 158909272 to 158965525 56253 + lncRNA gene predicted gene, 38630
Gm44319 2 159069863 to 159069955 92 + miRNA gene predicted gene, 44319
Gm25090 2 159139361 to 159139492 131 + snoRNA gene predicted gene, 25090
D2Mit341 2 159274941 to 159275163 222 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 341