Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:158256520-167606536

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1657 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ltpr2 2 103265371 to 167370436 64105065 QTL Leishmania tropica response 2
Pwgrq1 2 118758772 to 160769245 42010473 QTL pre-weaning growth rate QTL 1
Pwbwq5 2 118758772 to 160769245 42010473 QTL post-weaning body weight QTL 5
Pwbwq1 2 118758772 to 160769245 42010473 QTL pre-weaning body weight QTL 1
Pwgrq2 2 118758772 to 160769245 42010473 QTL pre-weaning growth rate QTL 2
Bsbob 2 143931525 to 165823099 21891574 QTL BSB obesity
Wg2d 2 143931525 to 160461088 16529563 QTL weight gain in high growth mice 2d
Hylaq2 2 151799021 to 164277226 12478205 QTL Hyperlocomotor activity related QTL 2
Tailq2 2 151799021 to 162895154 11096133 QTL tail length QTL 2
Epfq1 2 151799021 to 162895154 11096133 QTL epididymal fat pad weight QTL 1
Scfq1 2 151799021 to 162895154 11096133 QTL subcutaneous fat pad weight QTL 1
Agoc2 2 152000000 to 160000000 8000000 QTL agouti coat color QTL 2
Gnf2 2 152857301 to 162355165 9497864 QTL growth and fatness 2
Hrec 2 154711297 to 159586530 4875233 QTL hemotopoietic response to early cytokines
Gm34571 2 158247853 to 158258979 11126 - lncRNA gene predicted gene, 34571
Cpgi12591 2 158257886 to 158258182 296 CpG island CpG island 12591
Tssr21302 2 158258065 to 158258109 44 + TSS region transcription start site region 21302
Bpi 2 158258094 to 158284531 26437 + protein coding gene bactericidal permeablility increasing protein
Tssr21303 2 158258203 to 158258209 6 + TSS region transcription start site region 21303
Tssr727 2 158258218 to 158258219 1 + TSS region transcription start site region 727
Tssr21304 2 158258225 to 158258232 7 + TSS region transcription start site region 21304
Tssr21305 2 158258237 to 158258246 9 + TSS region transcription start site region 21305
Tssr21306 2 158258260 to 158258276 16 + TSS region transcription start site region 21306
Tssr27222 2 158258945 to 158258963 18 - TSS region transcription start site region 27222
Tssr21307 2 158262703 to 158262708 5 + TSS region transcription start site region 21307
Cpgi12592 2 158284549 to 158284771 222 CpG island CpG island 12592
Tssr21308 2 158285732 to 158285736 4 + TSS region transcription start site region 21308
Lbp 2 158306493 to 158332852 26359 + protein coding gene lipopolysaccharide binding protein
Tssr21309 2 158306625 to 158306653 28 + TSS region transcription start site region 21309
Tssr21310 2 158313238 to 158313260 22 + TSS region transcription start site region 21310
Tssr21311 2 158313264 to 158313288 24 + TSS region transcription start site region 21311
Tssr21312 2 158320295 to 158320312 17 + TSS region transcription start site region 21312
Tssr27223 2 158320329 to 158320346 17 - TSS region transcription start site region 27223
Tssr21313 2 158324587 to 158324594 7 + TSS region transcription start site region 21313
Tssr21314 2 158328359 to 158328369 10 + TSS region transcription start site region 21314
Snhg17 2 158353700 to 158361522 7822 - lncRNA gene small nucleolar RNA host gene 17
Gm24411 2 158356424 to 158356554 130 - snoRNA gene predicted gene, 24411
Gm26003 2 158358360 to 158358472 112 - snoRNA gene predicted gene, 26003
Gm23925 2 158359798 to 158359929 131 - lincRNA gene predicted gene, 23925
Tssr27224 2 158360567 to 158360610 43 - TSS region transcription start site region 27224
Cpgi12593 2 158361038 to 158361639 601 CpG island CpG island 12593
Tssr27225 2 158361461 to 158361467 6 - TSS region transcription start site region 27225
Tssr27226 2 158361472 to 158361503 31 - TSS region transcription start site region 27226
Tssr27227 2 158361505 to 158361554 49 - TSS region transcription start site region 27227
Cpgi12594 2 158375438 to 158376026 588 CpG island CpG island 12594
Snhg11 2 158375638 to 158386145 10507 + protein coding gene small nucleolar RNA host gene 11
Tssr21315 2 158375703 to 158375721 18 + TSS region transcription start site region 21315
Tssr21316 2 158376255 to 158376295 40 + TSS region transcription start site region 21316
Gm25187 2 158378222 to 158378354 132 + snoRNA gene predicted gene, 25187
Gm25129 2 158379534 to 158379666 132 + snoRNA gene predicted gene, 25129
Tssr21317 2 158381377 to 158381398 21 + TSS region transcription start site region 21317
Tssr21318 2 158382170 to 158382174 4 + TSS region transcription start site region 21318
Tssr21319 2 158382569 to 158382588 19 + TSS region transcription start site region 21319
Tssr21320 2 158382608 to 158382624 16 + TSS region transcription start site region 21320
Tssr21321 2 158382700 to 158382734 34 + TSS region transcription start site region 21321
Tssr21322 2 158382845 to 158382857 12 + TSS region transcription start site region 21322
Tssr21323 2 158382892 to 158382901 9 + TSS region transcription start site region 21323
Tssr21324 2 158382924 to 158382939 15 + TSS region transcription start site region 21324
Tssr21325 2 158382964 to 158382975 11 + TSS region transcription start site region 21325
Tssr21326 2 158382986 to 158382999 13 + TSS region transcription start site region 21326
Tssr21327 2 158383035 to 158383036 1 + TSS region transcription start site region 21327
Tssr21328 2 158383073 to 158383082 9 + TSS region transcription start site region 21328
Tssr21329 2 158383086 to 158383095 9 + TSS region transcription start site region 21329
Tssr21330 2 158383108 to 158383184 76 + TSS region transcription start site region 21330
Tssr27228 2 158383201 to 158383218 17 - TSS region transcription start site region 27228
Tssr21331 2 158383681 to 158383694 13 + TSS region transcription start site region 21331
Tssr21332 2 158383818 to 158383829 11 + TSS region transcription start site region 21332
Tssr21333 2 158383850 to 158383859 9 + TSS region transcription start site region 21333
Tssr21334 2 158384617 to 158384629 12 + TSS region transcription start site region 21334
Tssr21335 2 158384973 to 158384993 20 + TSS region transcription start site region 21335
Tssr21336 2 158385027 to 158385029 2 + TSS region transcription start site region 21336
Tssr21337 2 158385131 to 158385144 13 + TSS region transcription start site region 21337
Tssr21338 2 158385698 to 158385717 19 + TSS region transcription start site region 21338
Gm14201 2 158402727 to 158403015 288 - pseudogene predicted gene 14201
Gm14202 2 158406508 to 158406818 310 - pseudogene predicted gene 14202
Cpgi12595 2 158409329 to 158410688 1359 CpG island CpG island 12595
Tssr21339 2 158409791 to 158409800 9 + TSS region transcription start site region 21339
Tssr21340 2 158409842 to 158409862 20 + TSS region transcription start site region 21340
Ralgapb 2 158409848 to 158499253 89405 + protein coding gene Ral GTPase activating protein, beta subunit (non-catalytic)
Tssr21341 2 158409867 to 158409906 39 + TSS region transcription start site region 21341
Tssr21342 2 158409907 to 158409918 11 + TSS region transcription start site region 21342
Tssr21343 2 158409920 to 158409935 15 + TSS region transcription start site region 21343
Tssr21344 2 158410167 to 158410171 4 + TSS region transcription start site region 21344
3110040K02Rik 2 158411514 to 158411999 485 unclassified gene RIKEN cDNA 3110040K02 gene
Tssr21345 2 158416712 to 158416721 9 + TSS region transcription start site region 21345
Tssr21346 2 158436996 to 158437016 20 + TSS region transcription start site region 21346
Tssr21347 2 158437024 to 158437041 17 + TSS region transcription start site region 21347
Tssr21348 2 158439837 to 158439841 4 + TSS region transcription start site region 21348
Gm14200 2 158468169 to 158468360 191 - pseudogene predicted gene 14200
Gm24379 2 158487602 to 158487687 85 + unclassified non-coding RNA gene predicted gene, 24379
Tssr21349 2 158487945 to 158487948 3 + TSS region transcription start site region 21349
Tssr21350 2 158502537 to 158502552 15 + TSS region transcription start site region 21350
Tssr21351 2 158502577 to 158502586 9 + TSS region transcription start site region 21351
Adig 2 158502612 to 158508198 5586 + protein coding gene adipogenin
Tssr21352 2 158502615 to 158502632 17 + TSS region transcription start site region 21352
Tssr21353 2 158502633 to 158502698 65 + TSS region transcription start site region 21353
Tssr21354 2 158502708 to 158502720 12 + TSS region transcription start site region 21354
D2Mit409 2 158504556 to 158504654 98 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 409
Tssr21355 2 158512747 to 158512771 24 + TSS region transcription start site region 21355
Arhgap40 2 158512796 to 158550628 37832 + protein coding gene Rho GTPase activating protein 40
Tssr21356 2 158512805 to 158512812 7 + TSS region transcription start site region 21356
Cpgi12596 2 158539730 to 158539984 254 CpG island CpG island 12596
Cpgi12597 2 158556058 to 158556497 439 CpG island CpG island 12597
Gm14204 2 158595472 to 158610723 15251 - lncRNA gene predicted gene 14204
Tssr27229 2 158606635 to 158606639 4 - TSS region transcription start site region 27229
Tssr21357 2 158609601 to 158609612 11 + TSS region transcription start site region 21357
Cpgi12598 2 158609691 to 158611777 2086 CpG island CpG island 12598
Tssr27230 2 158610566 to 158610580 14 - TSS region transcription start site region 27230
Tssr27231 2 158610591 to 158610615 24 - TSS region transcription start site region 27231
Tssr27232 2 158610628 to 158610648 20 - TSS region transcription start site region 27232
Tssr27233 2 158610657 to 158610665 8 - TSS region transcription start site region 27233
Tssr21358 2 158610731 to 158610787 56 + TSS region transcription start site region 21358
Slc32a1 2 158610767 to 158615748 4981 + protein coding gene solute carrier family 32 (GABA vesicular transporter), member 1
Gm14205 2 158610910 to 158611820 910 - antisense lncRNA gene predicted gene 14205
Tssr21359 2 158610964 to 158610971 7 + TSS region transcription start site region 21359
Tssr21360 2 158610978 to 158611048 70 + TSS region transcription start site region 21360
Tssr21361 2 158611071 to 158611074 3 + TSS region transcription start site region 21361
Cpgi12599 2 158612052 to 158612435 383 CpG island CpG island 12599
Cpgi12600 2 158613668 to 158615356 1688 CpG island CpG island 12600
Tssr21362 2 158614377 to 158614391 14 + TSS region transcription start site region 21362
Cpgi12601 2 158624673 to 158625672 999 CpG island CpG island 12601
Tssr21363 2 158624882 to 158624896 14 + TSS region transcription start site region 21363
Actr5 2 158624888 to 158639211 14323 + protein coding gene ARP5 actin-related protein 5
Tssr21364 2 158624903 to 158624930 27 + TSS region transcription start site region 21364
Tssr21365 2 158624945 to 158624950 5 + TSS region transcription start site region 21365
Tssr27234 2 158625246 to 158625254 8 - TSS region transcription start site region 27234
Mir3474 2 158638583 to 158638640 57 + miRNA gene microRNA 3474
Tssr728 2 158666398 to 158666439 41 + TSS region transcription start site region 728
Tssr21366 2 158666597 to 158666646 49 + TSS region transcription start site region 21366
Tssr21367 2 158666658 to 158666672 14 + TSS region transcription start site region 21367
Tssr21368 2 158666690 to 158666740 50 + TSS region transcription start site region 21368
Ppp1r16b 2 158666733 to 158766334 99601 + protein coding gene protein phosphatase 1, regulatory subunit 16B
Tssr21369 2 158666743 to 158666752 9 + TSS region transcription start site region 21369
Cpgi12602 2 158667022 to 158668425 1403 CpG island CpG island 12602
Tssr21370 2 158667119 to 158667130 11 + TSS region transcription start site region 21370
Tssr21371 2 158667131 to 158667186 55 + TSS region transcription start site region 21371
Tssr21372 2 158667191 to 158667194 3 + TSS region transcription start site region 21372
Tssr21373 2 158668078 to 158668117 39 + TSS region transcription start site region 21373
Cpgi12603 2 158668558 to 158668825 267 CpG island CpG island 12603
Tssr27235 2 158668753 to 158668759 6 - TSS region transcription start site region 27235
Cpgi12604 2 158695944 to 158696301 357 CpG island CpG island 12604
Tssr21374 2 158700971 to 158700972 1 + TSS region transcription start site region 21374
Tssr21375 2 158723439 to 158723450 11 + TSS region transcription start site region 21375
Tssr21376 2 158723455 to 158723467 12 + TSS region transcription start site region 21376
Gm26141 2 158740138 to 158740263 125 + miRNA gene predicted gene, 26141
Tssr21377 2 158762118 to 158762137 19 + TSS region transcription start site region 21377
Cpgi12605 2 158767740 to 158768707 967 CpG island CpG island 12605
Tssr21378 2 158768083 to 158768099 16 + TSS region transcription start site region 21378
Fam83d 2 158768099 to 158786637 18538 + protein coding gene family with sequence similarity 83, member D
Cpgi12606 2 158794393 to 158795409 1016 CpG island CpG island 12606
Dhx35 2 158794807 to 158858214 63407 + protein coding gene DEAH (Asp-Glu-Ala-His) box polypeptide 35
Tssr21379 2 158794853 to 158794892 39 + TSS region transcription start site region 21379
3010023C09Rik 2 158858819 to 158859641 822 unclassified gene RIKEN cDNA 3010023C09 gene
Gm38630 2 158909272 to 158965525 56253 + lncRNA gene predicted gene, 38630
Gm44319 2 159069863 to 159069955 92 + miRNA gene predicted gene, 44319
Gm25090 2 159139361 to 159139492 131 + snoRNA gene predicted gene, 25090
D2Mit341 2 159274941 to 159275163 222 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 341
Tssr729 2 159354449 to 159354453 4 + TSS region transcription start site region 729
D2Dcr113 2 159430118 to 159430237 119 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 113
D2Mit287 2 159430119 to 159430251 132 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 287
Gm14219 2 159456170 to 159456457 287 - pseudogene predicted gene 14219
D2Mit411 2 159586427 to 159586530 103 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 411
Intim1 2 159586427 to 159586530 103 QTL intima modifier 1
Intmrm1 2 159586427 to 159586530 103 QTL intima/media ratio modifier 1
Mdq18 2 159752856 to 159752856 0 QTL mammary ductal QTL 18
Gm11445 2 159777676 to 159778207 531 - pseudogene predicted gene 11445
Gm11446 2 159858537 to 159859339 802 - pseudogene predicted gene 11446
Gm14223 2 159911773 to 159947376 35603 - lincRNA gene predicted gene 14223
4933416E03Rik 2 159947341 to 159981288 33947 + lncRNA gene RIKEN cDNA 4933416E03 gene
Gm14220 2 159978274 to 159978722 448 + pseudogene predicted gene 14220
9130015L21Rik 2 160016653 to 160040619 23966 + lincRNA gene RIKEN cDNA 9130015L21 gene
D2Mit410 2 160069467 to 160069585 118 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 410
Gm34741 2 160155226 to 160169665 14439 - lncRNA gene predicted gene, 34741
Tssr21380 2 160210776 to 160210804 28 + TSS region transcription start site region 21380
Gm34805 2 160213958 to 160252262 38304 - lncRNA gene predicted gene, 34805
Gm46773 2 160260334 to 160361096 100762 - protein coding gene predicted gene, 46773
Gm826 2 160311393 to 160334162 22769 - protein coding gene predicted gene 826
Tssr27236 2 160327169 to 160327192 23 - TSS region transcription start site region 27236
Tssr27237 2 160334111 to 160334122 11 - TSS region transcription start site region 27237
Mafb 2 160363703 to 160367065 3362 - protein coding gene v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)
Tssr21381 2 160364460 to 160364500 40 + TSS region transcription start site region 21381
Tssr27238 2 160364585 to 160364628 43 - TSS region transcription start site region 27238
Tssr27239 2 160364733 to 160364750 17 - TSS region transcription start site region 27239
Tssr730 2 160364882 to 160364895 13 - TSS region transcription start site region 730
Cpgi12607 2 160365149 to 160369408 4259 CpG island CpG island 12607
Tssr21382 2 160365779 to 160365808 29 + TSS region transcription start site region 21382
Tssr21383 2 160366230 to 160366244 14 + TSS region transcription start site region 21383
Tssr21384 2 160366254 to 160366284 30 + TSS region transcription start site region 21384
Tssr27240 2 160367057 to 160367073 16 - TSS region transcription start site region 27240
Tssr21385 2 160367345 to 160367357 12 + TSS region transcription start site region 21385
Tssr27241 2 160367940 to 160367951 11 - TSS region transcription start site region 27241
Cpgi12608 2 160370279 to 160370686 407 CpG island CpG island 12608
Gm34980 2 160374661 to 160381860 7199 + lncRNA gene predicted gene, 34980
Tssr21386 2 160394511 to 160394534 23 + TSS region transcription start site region 21386
D2Mit196 2 160460945 to 160461088 143 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 196
D2Dcr114 2 160460991 to 160461108 117 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 114
D2Mit453 2 160497254 to 160497367 113 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 453
Gm14221 2 160567634 to 160580769 13135 - lincRNA gene predicted gene 14221
Gm14222 2 160583357 to 160585191 1834 + sense intronic lncRNA gene predicted gene 14222
Tssr21387 2 160583396 to 160583400 4 + TSS region transcription start site region 21387