Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:157889549-158679771

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192 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ctnnbl1 2 157737401 to 157891614 154213 + protein coding gene catenin, beta like 1
Tssr21293 2 157901448 to 157901477 29 + TSS region transcription start site region 21293
Gm14176 2 157901536 to 157902012 476 + pseudogene predicted gene 14176
Cpgi12582 2 157913470 to 157913720 250 CpG island CpG island 12582
D2Mit55 2 157913751 to 157913920 169 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 55
Cpgi12583 2 157914164 to 157915525 1361 CpG island CpG island 12583
Tssr21294 2 157914618 to 157914653 35 + TSS region transcription start site region 21294
Vstm2l 2 157914653 to 157944719 30066 + protein coding gene V-set and transmembrane domain containing 2-like
Tssr21295 2 157914660 to 157914671 11 + TSS region transcription start site region 21295
Tssr723 2 157914673 to 157914680 7 + TSS region transcription start site region 723
Cpgi12584 2 157927504 to 157927702 198 CpG island CpG island 12584
C030015D19Rik 2 157938462 to 157942410 3948 unclassified gene RIKEN cDNA C030015D19 gene
Cpgi12585 2 157940860 to 157941526 666 CpG island CpG island 12585
Cpgi12586 2 157943501 to 157944890 1389 CpG island CpG island 12586
Tti1 2 157981803 to 158028433 46630 - protein coding gene TELO2 interacting protein 1
Gm34402 2 157986141 to 157992957 6816 - lncRNA gene predicted gene, 34402
Tssr27197 2 157997146 to 157997179 33 - TSS region transcription start site region 27197
Gm18385 2 158022363 to 158023051 688 + pseudogene predicted gene, 18385
Cpgi12587 2 158028128 to 158029218 1090 CpG island CpG island 12587
Tssr27198 2 158028400 to 158028417 17 - TSS region transcription start site region 27198
Tssr27199 2 158028423 to 158028440 17 - TSS region transcription start site region 27199
Tssr21296 2 158028481 to 158028539 58 + TSS region transcription start site region 21296
Rprd1b 2 158028489 to 158078207 49718 + protein coding gene regulation of nuclear pre-mRNA domain containing 1B
Tssr21297 2 158028547 to 158028568 21 + TSS region transcription start site region 21297
Tssr21298 2 158028687 to 158028729 42 + TSS region transcription start site region 21298
Tssr21299 2 158028733 to 158028821 88 + TSS region transcription start site region 21299
Tssr21300 2 158068876 to 158068881 5 + TSS region transcription start site region 21300
2010009K17Rik 2 158070367 to 158091797 21430 - antisense lncRNA gene RIKEN cDNA 2010009K17 gene
Tssr27200 2 158091741 to 158091756 15 - TSS region transcription start site region 27200
Tssr27201 2 158091790 to 158091795 5 - TSS region transcription start site region 27201
Gm34458 2 158104549 to 158112825 8276 + lncRNA gene predicted gene, 34458
Tgm2 2 158116405 to 158146392 29987 - protein coding gene transglutaminase 2, C polypeptide
Gm20412 2 158117154 to 158117905 751 + unclassified non-coding RNA gene predicted gene 20412
Tssr27202 2 158117488 to 158117491 3 - TSS region transcription start site region 27202
Tssr27203 2 158117788 to 158117809 21 - TSS region transcription start site region 27203
Tssr27204 2 158118879 to 158118886 7 - TSS region transcription start site region 27204
Tssr27205 2 158118969 to 158118978 9 - TSS region transcription start site region 27205
Tssr27206 2 158120195 to 158120211 16 - TSS region transcription start site region 27206
Tssr27207 2 158123933 to 158123937 4 - TSS region transcription start site region 27207
Tssr27208 2 158124145 to 158124182 37 - TSS region transcription start site region 27208
Tssr27209 2 158124285 to 158124298 13 - TSS region transcription start site region 27209
Tssr27210 2 158127177 to 158127188 11 - TSS region transcription start site region 27210
Tssr27211 2 158127304 to 158127310 6 - TSS region transcription start site region 27211
Tssr27212 2 158128665 to 158128693 28 - TSS region transcription start site region 27212
Tssr27213 2 158129409 to 158129432 23 - TSS region transcription start site region 27213
Tssr27214 2 158137626 to 158137632 6 - TSS region transcription start site region 27214
Tssr27215 2 158138864 to 158138889 25 - TSS region transcription start site region 27215
Cpgi12588 2 158145947 to 158146994 1047 CpG island CpG island 12588
Tssr724 2 158146343 to 158146352 9 - TSS region transcription start site region 724
Tssr27216 2 158146357 to 158146373 16 - TSS region transcription start site region 27216
Tssr27217 2 158146385 to 158146396 11 - TSS region transcription start site region 27217
Tssr21301 2 158153184 to 158153226 42 + TSS region transcription start site region 21301
Tssr725 2 158166702 to 158166712 10 - TSS region transcription start site region 725
Cpgi12589 2 158174908 to 158175223 315 CpG island CpG island 12589
Tssr726 2 158175422 to 158175456 34 - TSS region transcription start site region 726
Gm34514 2 158179064 to 158179573 509 + lncRNA gene predicted gene, 34514
D630003M21Rik 2 158182533 to 158229222 46689 - protein coding gene RIKEN cDNA D630003M21 gene
1700060C20Rik 2 158192008 to 158195737 3729 + antisense lncRNA gene RIKEN cDNA 1700060C20 gene
Tssr27218 2 158211785 to 158211794 9 - TSS region transcription start site region 27218
Tssr27219 2 158228698 to 158228702 4 - TSS region transcription start site region 27219
Cpgi12590 2 158228785 to 158229764 979 CpG island CpG island 12590
Tssr27220 2 158229215 to 158229240 25 - TSS region transcription start site region 27220
Tssr27221 2 158231169 to 158231173 4 - TSS region transcription start site region 27221
Nidd2k 2 158236417 to 178800659 20564242 QTL Nidd2 on KK-A
D2Mit225 2 158236417 to 158236560 143 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 225
Mir7685 2 158243504 to 158243565 61 - miRNA gene microRNA 7685
Gm34571 2 158247853 to 158258979 11126 - lncRNA gene predicted gene, 34571
Cpgi12591 2 158257886 to 158258182 296 CpG island CpG island 12591
Tssr21302 2 158258065 to 158258109 44 + TSS region transcription start site region 21302
Bpi 2 158258094 to 158284531 26437 + protein coding gene bactericidal permeablility increasing protein
Tssr21303 2 158258203 to 158258209 6 + TSS region transcription start site region 21303
Tssr727 2 158258218 to 158258219 1 + TSS region transcription start site region 727
Tssr21304 2 158258225 to 158258232 7 + TSS region transcription start site region 21304
Tssr21305 2 158258237 to 158258246 9 + TSS region transcription start site region 21305
Tssr21306 2 158258260 to 158258276 16 + TSS region transcription start site region 21306
Tssr27222 2 158258945 to 158258963 18 - TSS region transcription start site region 27222
Tssr21307 2 158262703 to 158262708 5 + TSS region transcription start site region 21307
Cpgi12592 2 158284549 to 158284771 222 CpG island CpG island 12592
Tssr21308 2 158285732 to 158285736 4 + TSS region transcription start site region 21308
Lbp 2 158306493 to 158332852 26359 + protein coding gene lipopolysaccharide binding protein
Tssr21309 2 158306625 to 158306653 28 + TSS region transcription start site region 21309
Tssr21310 2 158313238 to 158313260 22 + TSS region transcription start site region 21310
Tssr21311 2 158313264 to 158313288 24 + TSS region transcription start site region 21311
Tssr21312 2 158320295 to 158320312 17 + TSS region transcription start site region 21312
Tssr27223 2 158320329 to 158320346 17 - TSS region transcription start site region 27223
Tssr21313 2 158324587 to 158324594 7 + TSS region transcription start site region 21313
Tssr21314 2 158328359 to 158328369 10 + TSS region transcription start site region 21314
Snhg17 2 158353700 to 158361522 7822 - lncRNA gene small nucleolar RNA host gene 17
Gm24411 2 158356424 to 158356554 130 - snoRNA gene predicted gene, 24411
Gm26003 2 158358360 to 158358472 112 - snoRNA gene predicted gene, 26003
Gm23925 2 158359798 to 158359929 131 - lincRNA gene predicted gene, 23925
Tssr27224 2 158360567 to 158360610 43 - TSS region transcription start site region 27224
Cpgi12593 2 158361038 to 158361639 601 CpG island CpG island 12593
Tssr27225 2 158361461 to 158361467 6 - TSS region transcription start site region 27225
Tssr27226 2 158361472 to 158361503 31 - TSS region transcription start site region 27226
Tssr27227 2 158361505 to 158361554 49 - TSS region transcription start site region 27227
Cpgi12594 2 158375438 to 158376026 588 CpG island CpG island 12594
Snhg11 2 158375638 to 158386145 10507 + protein coding gene small nucleolar RNA host gene 11
Tssr21315 2 158375703 to 158375721 18 + TSS region transcription start site region 21315
Tssr21316 2 158376255 to 158376295 40 + TSS region transcription start site region 21316
Gm25187 2 158378222 to 158378354 132 + snoRNA gene predicted gene, 25187
Gm25129 2 158379534 to 158379666 132 + snoRNA gene predicted gene, 25129
Tssr21317 2 158381377 to 158381398 21 + TSS region transcription start site region 21317
Tssr21318 2 158382170 to 158382174 4 + TSS region transcription start site region 21318
Tssr21319 2 158382569 to 158382588 19 + TSS region transcription start site region 21319
Tssr21320 2 158382608 to 158382624 16 + TSS region transcription start site region 21320
Tssr21321 2 158382700 to 158382734 34 + TSS region transcription start site region 21321
Tssr21322 2 158382845 to 158382857 12 + TSS region transcription start site region 21322
Tssr21323 2 158382892 to 158382901 9 + TSS region transcription start site region 21323
Tssr21324 2 158382924 to 158382939 15 + TSS region transcription start site region 21324
Tssr21325 2 158382964 to 158382975 11 + TSS region transcription start site region 21325
Tssr21326 2 158382986 to 158382999 13 + TSS region transcription start site region 21326
Tssr21327 2 158383035 to 158383036 1 + TSS region transcription start site region 21327
Tssr21328 2 158383073 to 158383082 9 + TSS region transcription start site region 21328
Tssr21329 2 158383086 to 158383095 9 + TSS region transcription start site region 21329
Tssr21330 2 158383108 to 158383184 76 + TSS region transcription start site region 21330
Tssr27228 2 158383201 to 158383218 17 - TSS region transcription start site region 27228
Tssr21331 2 158383681 to 158383694 13 + TSS region transcription start site region 21331
Tssr21332 2 158383818 to 158383829 11 + TSS region transcription start site region 21332
Tssr21333 2 158383850 to 158383859 9 + TSS region transcription start site region 21333
Tssr21334 2 158384617 to 158384629 12 + TSS region transcription start site region 21334
Tssr21335 2 158384973 to 158384993 20 + TSS region transcription start site region 21335
Tssr21336 2 158385027 to 158385029 2 + TSS region transcription start site region 21336
Tssr21337 2 158385131 to 158385144 13 + TSS region transcription start site region 21337
Tssr21338 2 158385698 to 158385717 19 + TSS region transcription start site region 21338
Gm14201 2 158402727 to 158403015 288 - pseudogene predicted gene 14201
Gm14202 2 158406508 to 158406818 310 - pseudogene predicted gene 14202
Cpgi12595 2 158409329 to 158410688 1359 CpG island CpG island 12595
Tssr21339 2 158409791 to 158409800 9 + TSS region transcription start site region 21339
Tssr21340 2 158409842 to 158409862 20 + TSS region transcription start site region 21340
Ralgapb 2 158409848 to 158499253 89405 + protein coding gene Ral GTPase activating protein, beta subunit (non-catalytic)
Tssr21341 2 158409867 to 158409906 39 + TSS region transcription start site region 21341
Tssr21342 2 158409907 to 158409918 11 + TSS region transcription start site region 21342
Tssr21343 2 158409920 to 158409935 15 + TSS region transcription start site region 21343
Tssr21344 2 158410167 to 158410171 4 + TSS region transcription start site region 21344
3110040K02Rik 2 158411514 to 158411999 485 unclassified gene RIKEN cDNA 3110040K02 gene
Tssr21345 2 158416712 to 158416721 9 + TSS region transcription start site region 21345
Tssr21346 2 158436996 to 158437016 20 + TSS region transcription start site region 21346
Tssr21347 2 158437024 to 158437041 17 + TSS region transcription start site region 21347
Tssr21348 2 158439837 to 158439841 4 + TSS region transcription start site region 21348
Gm14200 2 158468169 to 158468360 191 - pseudogene predicted gene 14200
Gm24379 2 158487602 to 158487687 85 + unclassified non-coding RNA gene predicted gene, 24379
Tssr21349 2 158487945 to 158487948 3 + TSS region transcription start site region 21349
Tssr21350 2 158502537 to 158502552 15 + TSS region transcription start site region 21350
Tssr21351 2 158502577 to 158502586 9 + TSS region transcription start site region 21351
Adig 2 158502612 to 158508198 5586 + protein coding gene adipogenin
Tssr21352 2 158502615 to 158502632 17 + TSS region transcription start site region 21352
Tssr21353 2 158502633 to 158502698 65 + TSS region transcription start site region 21353
Tssr21354 2 158502708 to 158502720 12 + TSS region transcription start site region 21354
D2Mit409 2 158504556 to 158504654 98 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 409
Tssr21355 2 158512747 to 158512771 24 + TSS region transcription start site region 21355
Arhgap40 2 158512796 to 158550628 37832 + protein coding gene Rho GTPase activating protein 40
Tssr21356 2 158512805 to 158512812 7 + TSS region transcription start site region 21356
Cpgi12596 2 158539730 to 158539984 254 CpG island CpG island 12596
Cpgi12597 2 158556058 to 158556497 439 CpG island CpG island 12597
Gm14204 2 158595472 to 158610723 15251 - lncRNA gene predicted gene 14204
Tssr27229 2 158606635 to 158606639 4 - TSS region transcription start site region 27229
Tssr21357 2 158609601 to 158609612 11 + TSS region transcription start site region 21357
Cpgi12598 2 158609691 to 158611777 2086 CpG island CpG island 12598
Tssr27230 2 158610566 to 158610580 14 - TSS region transcription start site region 27230
Tssr27231 2 158610591 to 158610615 24 - TSS region transcription start site region 27231
Tssr27232 2 158610628 to 158610648 20 - TSS region transcription start site region 27232
Tssr27233 2 158610657 to 158610665 8 - TSS region transcription start site region 27233
Tssr21358 2 158610731 to 158610787 56 + TSS region transcription start site region 21358
Slc32a1 2 158610767 to 158615748 4981 + protein coding gene solute carrier family 32 (GABA vesicular transporter), member 1
Gm14205 2 158610910 to 158611820 910 - antisense lncRNA gene predicted gene 14205
Tssr21359 2 158610964 to 158610971 7 + TSS region transcription start site region 21359
Tssr21360 2 158610978 to 158611048 70 + TSS region transcription start site region 21360
Tssr21361 2 158611071 to 158611074 3 + TSS region transcription start site region 21361
Cpgi12599 2 158612052 to 158612435 383 CpG island CpG island 12599
Cpgi12600 2 158613668 to 158615356 1688 CpG island CpG island 12600
Tssr21362 2 158614377 to 158614391 14 + TSS region transcription start site region 21362
Cpgi12601 2 158624673 to 158625672 999 CpG island CpG island 12601
Tssr21363 2 158624882 to 158624896 14 + TSS region transcription start site region 21363
Actr5 2 158624888 to 158639211 14323 + protein coding gene ARP5 actin-related protein 5
Tssr21364 2 158624903 to 158624930 27 + TSS region transcription start site region 21364
Tssr21365 2 158624945 to 158624950 5 + TSS region transcription start site region 21365
Tssr27234 2 158625246 to 158625254 8 - TSS region transcription start site region 27234
Mir3474 2 158638583 to 158638640 57 + miRNA gene microRNA 3474
Tssr728 2 158666398 to 158666439 41 + TSS region transcription start site region 728
Tssr21366 2 158666597 to 158666646 49 + TSS region transcription start site region 21366
Tssr21367 2 158666658 to 158666672 14 + TSS region transcription start site region 21367
Tssr21368 2 158666690 to 158666740 50 + TSS region transcription start site region 21368
Ppp1r16b 2 158666733 to 158766334 99601 + protein coding gene protein phosphatase 1, regulatory subunit 16B
Tssr21369 2 158666743 to 158666752 9 + TSS region transcription start site region 21369
Cpgi12602 2 158667022 to 158668425 1403 CpG island CpG island 12602
Tssr21370 2 158667119 to 158667130 11 + TSS region transcription start site region 21370
Tssr21371 2 158667131 to 158667186 55 + TSS region transcription start site region 21371
Tssr21372 2 158667191 to 158667194 3 + TSS region transcription start site region 21372
Tssr21373 2 158668078 to 158668117 39 + TSS region transcription start site region 21373
Cpgi12603 2 158668558 to 158668825 267 CpG island CpG island 12603
Tssr27235 2 158668753 to 158668759 6 - TSS region transcription start site region 27235