Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:157589653-158269719

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100 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Platr27 2 157595583 to 157597320 1737 - lincRNA gene pluripotency associated transcript 27
Tssr27194 2 157597308 to 157597326 18 - TSS region transcription start site region 27194
Bdln10 2 157599562 to 157599562 0 QTL body length 10
Bodwt3 2 157599562 to 157599562 0 QTL body weight 3
Cpgi12578 2 157605120 to 157605320 200 CpG island CpG island 12578
D2Mit496.2 2 157643126 to 157643280 154 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 496.2
D2Mit496 2 157643293 to 157643417 124 DNA segment DNA Segment, Chr 2 Massachusetts Institute of Technology 496
Cpgi12579 2 157674976 to 157675220 244 CpG island CpG island 12579
Gm34293 2 157676563 to 157682459 5896 + lncRNA gene predicted gene, 34293
Gm25407 2 157713668 to 157713801 133 - snoRNA gene predicted gene, 25407
Gm23463 2 157726000 to 157726098 98 + snRNA gene predicted gene, 23463
Cpgi12580 2 157737202 to 157737810 608 CpG island CpG island 12580
Ctnnbl1 2 157737401 to 157891614 154213 + protein coding gene catenin, beta like 1
Tssr21286 2 157737425 to 157737490 65 + TSS region transcription start site region 21286
Cpgi12581 2 157751891 to 157752192 301 CpG island CpG island 12581
Tssr21287 2 157788551 to 157788557 6 + TSS region transcription start site region 21287
Tssr21288 2 157793506 to 157793523 17 + TSS region transcription start site region 21288
Tssr21289 2 157793545 to 157793555 10 + TSS region transcription start site region 21289
Tssr722 2 157794225 to 157794232 7 - TSS region transcription start site region 722
Tssr27195 2 157794234 to 157794257 23 - TSS region transcription start site region 27195
Tssr27196 2 157794260 to 157794267 7 - TSS region transcription start site region 27196
Tssr21290 2 157797349 to 157797352 3 + TSS region transcription start site region 21290
Tssr21291 2 157817958 to 157817983 25 + TSS region transcription start site region 21291
Tssr21292 2 157832303 to 157832315 12 + TSS region transcription start site region 21292
Tssr21293 2 157901448 to 157901477 29 + TSS region transcription start site region 21293
Gm14176 2 157901536 to 157902012 476 + pseudogene predicted gene 14176
Cpgi12582 2 157913470 to 157913720 250 CpG island CpG island 12582
D2Mit55 2 157913751 to 157913920 169 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 55
Cpgi12583 2 157914164 to 157915525 1361 CpG island CpG island 12583
Tssr21294 2 157914618 to 157914653 35 + TSS region transcription start site region 21294
Vstm2l 2 157914653 to 157944719 30066 + protein coding gene V-set and transmembrane domain containing 2-like
Tssr21295 2 157914660 to 157914671 11 + TSS region transcription start site region 21295
Tssr723 2 157914673 to 157914680 7 + TSS region transcription start site region 723
Cpgi12584 2 157927504 to 157927702 198 CpG island CpG island 12584
C030015D19Rik 2 157938462 to 157942410 3948 unclassified gene RIKEN cDNA C030015D19 gene
Cpgi12585 2 157940860 to 157941526 666 CpG island CpG island 12585
Cpgi12586 2 157943501 to 157944890 1389 CpG island CpG island 12586
Tti1 2 157981803 to 158028433 46630 - protein coding gene TELO2 interacting protein 1
Gm34402 2 157986141 to 157992957 6816 - lncRNA gene predicted gene, 34402
Tssr27197 2 157997146 to 157997179 33 - TSS region transcription start site region 27197
Gm18385 2 158022363 to 158023051 688 + pseudogene predicted gene, 18385
Cpgi12587 2 158028128 to 158029218 1090 CpG island CpG island 12587
Tssr27198 2 158028400 to 158028417 17 - TSS region transcription start site region 27198
Tssr27199 2 158028423 to 158028440 17 - TSS region transcription start site region 27199
Tssr21296 2 158028481 to 158028539 58 + TSS region transcription start site region 21296
Rprd1b 2 158028489 to 158078207 49718 + protein coding gene regulation of nuclear pre-mRNA domain containing 1B
Tssr21297 2 158028547 to 158028568 21 + TSS region transcription start site region 21297
Tssr21298 2 158028687 to 158028729 42 + TSS region transcription start site region 21298
Tssr21299 2 158028733 to 158028821 88 + TSS region transcription start site region 21299
Tssr21300 2 158068876 to 158068881 5 + TSS region transcription start site region 21300
2010009K17Rik 2 158070367 to 158091797 21430 - antisense lncRNA gene RIKEN cDNA 2010009K17 gene
Tssr27200 2 158091741 to 158091756 15 - TSS region transcription start site region 27200
Tssr27201 2 158091790 to 158091795 5 - TSS region transcription start site region 27201
Gm34458 2 158104549 to 158112825 8276 + lncRNA gene predicted gene, 34458
Tgm2 2 158116405 to 158146392 29987 - protein coding gene transglutaminase 2, C polypeptide
Gm20412 2 158117154 to 158117905 751 + unclassified non-coding RNA gene predicted gene 20412
Tssr27202 2 158117488 to 158117491 3 - TSS region transcription start site region 27202
Tssr27203 2 158117788 to 158117809 21 - TSS region transcription start site region 27203
Tssr27204 2 158118879 to 158118886 7 - TSS region transcription start site region 27204
Tssr27205 2 158118969 to 158118978 9 - TSS region transcription start site region 27205
Tssr27206 2 158120195 to 158120211 16 - TSS region transcription start site region 27206
Tssr27207 2 158123933 to 158123937 4 - TSS region transcription start site region 27207
Tssr27208 2 158124145 to 158124182 37 - TSS region transcription start site region 27208
Tssr27209 2 158124285 to 158124298 13 - TSS region transcription start site region 27209
Tssr27210 2 158127177 to 158127188 11 - TSS region transcription start site region 27210
Tssr27211 2 158127304 to 158127310 6 - TSS region transcription start site region 27211
Tssr27212 2 158128665 to 158128693 28 - TSS region transcription start site region 27212
Tssr27213 2 158129409 to 158129432 23 - TSS region transcription start site region 27213
Tssr27214 2 158137626 to 158137632 6 - TSS region transcription start site region 27214
Tssr27215 2 158138864 to 158138889 25 - TSS region transcription start site region 27215
Cpgi12588 2 158145947 to 158146994 1047 CpG island CpG island 12588
Tssr724 2 158146343 to 158146352 9 - TSS region transcription start site region 724
Tssr27216 2 158146357 to 158146373 16 - TSS region transcription start site region 27216
Tssr27217 2 158146385 to 158146396 11 - TSS region transcription start site region 27217
Tssr21301 2 158153184 to 158153226 42 + TSS region transcription start site region 21301
Tssr725 2 158166702 to 158166712 10 - TSS region transcription start site region 725
Cpgi12589 2 158174908 to 158175223 315 CpG island CpG island 12589
Tssr726 2 158175422 to 158175456 34 - TSS region transcription start site region 726
Gm34514 2 158179064 to 158179573 509 + lncRNA gene predicted gene, 34514
D630003M21Rik 2 158182533 to 158229222 46689 - protein coding gene RIKEN cDNA D630003M21 gene
1700060C20Rik 2 158192008 to 158195737 3729 + antisense lncRNA gene RIKEN cDNA 1700060C20 gene
Tssr27218 2 158211785 to 158211794 9 - TSS region transcription start site region 27218
Tssr27219 2 158228698 to 158228702 4 - TSS region transcription start site region 27219
Cpgi12590 2 158228785 to 158229764 979 CpG island CpG island 12590
Tssr27220 2 158229215 to 158229240 25 - TSS region transcription start site region 27220
Tssr27221 2 158231169 to 158231173 4 - TSS region transcription start site region 27221
D2Mit225 2 158236417 to 158236560 143 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 225
Nidd2k 2 158236417 to 178800659 20564242 QTL Nidd2 on KK-A
Mir7685 2 158243504 to 158243565 61 - miRNA gene microRNA 7685
Gm34571 2 158247853 to 158258979 11126 - lncRNA gene predicted gene, 34571
Cpgi12591 2 158257886 to 158258182 296 CpG island CpG island 12591
Tssr21302 2 158258065 to 158258109 44 + TSS region transcription start site region 21302
Bpi 2 158258094 to 158284531 26437 + protein coding gene bactericidal permeablility increasing protein
Tssr21303 2 158258203 to 158258209 6 + TSS region transcription start site region 21303
Tssr727 2 158258218 to 158258219 1 + TSS region transcription start site region 727
Tssr21304 2 158258225 to 158258232 7 + TSS region transcription start site region 21304
Tssr21305 2 158258237 to 158258246 9 + TSS region transcription start site region 21305
Tssr21306 2 158258260 to 158258276 16 + TSS region transcription start site region 21306
Tssr27222 2 158258945 to 158258963 18 - TSS region transcription start site region 27222
Tssr21307 2 158262703 to 158262708 5 + TSS region transcription start site region 21307