Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:157502349-158092352

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96 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr27179 2 157514354 to 157514366 12 - TSS region transcription start site region 27179
Gm14279 2 157521697 to 157522028 331 - pseudogene predicted gene 14279
Gm14287 2 157528869 to 157528985 116 - pseudogene predicted gene 14287
Tssr27180 2 157540882 to 157540904 22 - TSS region transcription start site region 27180
Gm14286 2 157544266 to 157545469 1203 - antisense lncRNA gene predicted gene 14286
Tssr27181 2 157555581 to 157555582 1 - TSS region transcription start site region 27181
Blcap 2 157556362 to 157566460 10098 - protein coding gene bladder cancer associated protein
Tssr27182 2 157557606 to 157557609 3 - TSS region transcription start site region 27182
Cpgi12575 2 157559973 to 157560594 621 CpG island CpG island 12575
Nnat 2 157560078 to 157562522 2444 + protein coding gene neuronatin
Tssr21268 2 157560102 to 157560119 17 + TSS region transcription start site region 21268
Tssr21269 2 157560573 to 157560604 31 + TSS region transcription start site region 21269
Tssr21270 2 157560664 to 157560675 11 + TSS region transcription start site region 21270
Tssr21271 2 157560765 to 157560789 24 + TSS region transcription start site region 21271
Tssr21272 2 157560812 to 157560828 16 + TSS region transcription start site region 21272
Tssr27183 2 157560862 to 157560883 21 - TSS region transcription start site region 27183
Tssr27184 2 157560969 to 157560973 4 - TSS region transcription start site region 27184
Cpgi12576 2 157561460 to 157561699 239 CpG island CpG island 12576
Tssr21273 2 157561475 to 157561485 10 + TSS region transcription start site region 21273
Tssr21274 2 157561717 to 157561731 14 + TSS region transcription start site region 21274
Tssr21275 2 157561772 to 157561783 11 + TSS region transcription start site region 21275
Tssr27185 2 157561852 to 157561884 32 - TSS region transcription start site region 27185
Tssr21276 2 157561873 to 157561896 23 + TSS region transcription start site region 21276
Tssr21277 2 157561902 to 157561914 12 + TSS region transcription start site region 21277
Tssr21278 2 157561937 to 157561947 10 + TSS region transcription start site region 21278
Tssr27186 2 157561979 to 157562014 35 - TSS region transcription start site region 27186
Tssr21279 2 157562029 to 157562032 3 + TSS region transcription start site region 21279
Tssr21280 2 157562108 to 157562144 36 + TSS region transcription start site region 21280
Tssr21281 2 157562155 to 157562218 63 + TSS region transcription start site region 21281
Tssr21282 2 157562280 to 157562291 11 + TSS region transcription start site region 21282
Tssr21283 2 157562294 to 157562320 26 + TSS region transcription start site region 21283
Gm23134 2 157562361 to 157562447 86 - miRNA gene predicted gene, 23134
Tssr721 2 157562441 to 157562457 16 - TSS region transcription start site region 721
Cpgi12577 2 157565670 to 157566965 1295 CpG island CpG island 12577
Tssr27187 2 157566294 to 157566305 11 - TSS region transcription start site region 27187
Tssr27188 2 157566319 to 157566350 31 - TSS region transcription start site region 27188
Tssr21284 2 157566620 to 157566641 21 + TSS region transcription start site region 21284
Tssr27189 2 157566700 to 157566723 23 - TSS region transcription start site region 27189
Tssr21285 2 157566930 to 157566941 11 + TSS region transcription start site region 21285
Tssr27190 2 157569504 to 157569515 11 - TSS region transcription start site region 27190
Tssr27191 2 157571270 to 157571289 19 - TSS region transcription start site region 27191
Tssr27192 2 157571304 to 157571316 12 - TSS region transcription start site region 27192
Tssr27193 2 157571435 to 157571447 12 - TSS region transcription start site region 27193
Platr27 2 157595583 to 157597320 1737 - lincRNA gene pluripotency associated transcript 27
Tssr27194 2 157597308 to 157597326 18 - TSS region transcription start site region 27194
Bodwt3 2 157599562 to 157599562 0 QTL body weight 3
Bdln10 2 157599562 to 157599562 0 QTL body length 10
Cpgi12578 2 157605120 to 157605320 200 CpG island CpG island 12578
D2Mit496.2 2 157643126 to 157643280 154 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 496.2
D2Mit496 2 157643293 to 157643417 124 DNA segment DNA Segment, Chr 2 Massachusetts Institute of Technology 496
Cpgi12579 2 157674976 to 157675220 244 CpG island CpG island 12579
Gm34293 2 157676563 to 157682459 5896 + lncRNA gene predicted gene, 34293
Gm25407 2 157713668 to 157713801 133 - snoRNA gene predicted gene, 25407
Gm23463 2 157726000 to 157726098 98 + snRNA gene predicted gene, 23463
Cpgi12580 2 157737202 to 157737810 608 CpG island CpG island 12580
Ctnnbl1 2 157737401 to 157891614 154213 + protein coding gene catenin, beta like 1
Tssr21286 2 157737425 to 157737490 65 + TSS region transcription start site region 21286
Cpgi12581 2 157751891 to 157752192 301 CpG island CpG island 12581
Tssr21287 2 157788551 to 157788557 6 + TSS region transcription start site region 21287
Tssr21288 2 157793506 to 157793523 17 + TSS region transcription start site region 21288
Tssr21289 2 157793545 to 157793555 10 + TSS region transcription start site region 21289
Tssr722 2 157794225 to 157794232 7 - TSS region transcription start site region 722
Tssr27195 2 157794234 to 157794257 23 - TSS region transcription start site region 27195
Tssr27196 2 157794260 to 157794267 7 - TSS region transcription start site region 27196
Tssr21290 2 157797349 to 157797352 3 + TSS region transcription start site region 21290
Tssr21291 2 157817958 to 157817983 25 + TSS region transcription start site region 21291
Tssr21292 2 157832303 to 157832315 12 + TSS region transcription start site region 21292
Tssr21293 2 157901448 to 157901477 29 + TSS region transcription start site region 21293
Gm14176 2 157901536 to 157902012 476 + pseudogene predicted gene 14176
Cpgi12582 2 157913470 to 157913720 250 CpG island CpG island 12582
D2Mit55 2 157913751 to 157913920 169 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 55
Cpgi12583 2 157914164 to 157915525 1361 CpG island CpG island 12583
Tssr21294 2 157914618 to 157914653 35 + TSS region transcription start site region 21294
Vstm2l 2 157914653 to 157944719 30066 + protein coding gene V-set and transmembrane domain containing 2-like
Tssr21295 2 157914660 to 157914671 11 + TSS region transcription start site region 21295
Tssr723 2 157914673 to 157914680 7 + TSS region transcription start site region 723
Cpgi12584 2 157927504 to 157927702 198 CpG island CpG island 12584
C030015D19Rik 2 157938462 to 157942410 3948 unclassified gene RIKEN cDNA C030015D19 gene
Cpgi12585 2 157940860 to 157941526 666 CpG island CpG island 12585
Cpgi12586 2 157943501 to 157944890 1389 CpG island CpG island 12586
Tti1 2 157981803 to 158028433 46630 - protein coding gene TELO2 interacting protein 1
Gm34402 2 157986141 to 157992957 6816 - lncRNA gene predicted gene, 34402
Tssr27197 2 157997146 to 157997179 33 - TSS region transcription start site region 27197
Gm18385 2 158022363 to 158023051 688 + pseudogene predicted gene, 18385
Cpgi12587 2 158028128 to 158029218 1090 CpG island CpG island 12587
Tssr27198 2 158028400 to 158028417 17 - TSS region transcription start site region 27198
Tssr27199 2 158028423 to 158028440 17 - TSS region transcription start site region 27199
Tssr21296 2 158028481 to 158028539 58 + TSS region transcription start site region 21296
Rprd1b 2 158028489 to 158078207 49718 + protein coding gene regulation of nuclear pre-mRNA domain containing 1B
Tssr21297 2 158028547 to 158028568 21 + TSS region transcription start site region 21297
Tssr21298 2 158028687 to 158028729 42 + TSS region transcription start site region 21298
Tssr21299 2 158028733 to 158028821 88 + TSS region transcription start site region 21299
Tssr21300 2 158068876 to 158068881 5 + TSS region transcription start site region 21300
2010009K17Rik 2 158070367 to 158091797 21430 - antisense lncRNA gene RIKEN cDNA 2010009K17 gene
Tssr27200 2 158091741 to 158091756 15 - TSS region transcription start site region 27200
Tssr27201 2 158091790 to 158091795 5 - TSS region transcription start site region 27201