Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:156148113-156518305

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84 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rbm39 2 156147239 to 156180238 32999 - protein coding gene RNA binding motif protein 39
Tssr27033 2 156152806 to 156152811 5 - TSS region transcription start site region 27033
Tssr27034 2 156154294 to 156154295 1 - TSS region transcription start site region 27034
Tssr27035 2 156167708 to 156167754 46 - TSS region transcription start site region 27035
Tssr21143 2 156172923 to 156172991 68 + TSS region transcription start site region 21143
Tssr27036 2 156172991 to 156173024 33 - TSS region transcription start site region 27036
Tssr27037 2 156173176 to 156173190 14 - TSS region transcription start site region 27037
Tssr27038 2 156173727 to 156173731 4 - TSS region transcription start site region 27038
Tssr27039 2 156174523 to 156174536 13 - TSS region transcription start site region 27039
Tssr27040 2 156176571 to 156176586 15 - TSS region transcription start site region 27040
Tssr27041 2 156176786 to 156176818 32 - TSS region transcription start site region 27041
Tssr27042 2 156177763 to 156177780 17 - TSS region transcription start site region 27042
Cpgi12544 2 156179320 to 156180552 1232 CpG island CpG island 12544
Tssr21144 2 156179585 to 156179609 24 + TSS region transcription start site region 21144
Tssr27043 2 156179972 to 156179983 11 - TSS region transcription start site region 27043
Tssr27044 2 156180135 to 156180201 66 - TSS region transcription start site region 27044
A930012N16Rik 2 156180576 to 156181672 1096 unclassified gene RIKEN cDNA A930012N16 gene
Cpgi12545 2 156196245 to 156197297 1052 CpG island CpG island 12545
Tssr27045 2 156196523 to 156196561 38 - TSS region transcription start site region 27045
Phf20 2 156196647 to 156309953 113306 + protein coding gene PHD finger protein 20
Tssr21145 2 156196707 to 156196775 68 + TSS region transcription start site region 21145
Tssr21146 2 156202469 to 156202473 4 + TSS region transcription start site region 21146
Tssr21147 2 156255183 to 156255191 8 + TSS region transcription start site region 21147
Cpgi12546 2 156311503 to 156312947 1444 CpG island CpG island 12546
Tssr21148 2 156311753 to 156311766 13 + TSS region transcription start site region 21148
Scand1 2 156311847 to 156312704 857 - protein coding gene SCAN domain-containing 1
Tssr27046 2 156312287 to 156312302 15 - TSS region transcription start site region 27046
Tssr27047 2 156312311 to 156312323 12 - TSS region transcription start site region 27047
Tssr27048 2 156312347 to 156312356 9 - TSS region transcription start site region 27048
Tssr27049 2 156312395 to 156312434 39 - TSS region transcription start site region 27049
Cnbd2 2 156312402 to 156375638 63236 + protein coding gene cyclic nucleotide binding domain containing 2
Tssr21149 2 156312419 to 156312426 7 + TSS region transcription start site region 21149
Tssr21150 2 156312428 to 156312481 53 + TSS region transcription start site region 21150
Tssr27050 2 156312470 to 156312575 105 - TSS region transcription start site region 27050
Tssr21151 2 156312589 to 156312625 36 + TSS region transcription start site region 21151
Gm14251 2 156322402 to 156322680 278 + pseudogene predicted gene 14251
Gm22759 2 156322552 to 156322647 95 + miRNA gene predicted gene, 22759
Gm14252 2 156332317 to 156339381 7064 - antisense lncRNA gene predicted gene 14252
Cpgi12547 2 156333113 to 156333305 192 CpG island CpG island 12547
Gm14253 2 156347202 to 156347840 638 - pseudogene predicted gene 14253
Tssr27051 2 156347971 to 156348000 29 - TSS region transcription start site region 27051
Tssr27052 2 156348031 to 156348054 23 - TSS region transcription start site region 27052
Gm39972 2 156357022 to 156363034 6012 - protein coding gene predicted gene, 39972
Tssr716 2 156369235 to 156369239 4 + TSS region transcription start site region 716
Tssr21152 2 156371253 to 156371271 18 + TSS region transcription start site region 21152
Gm14170 2 156377925 to 156378968 1043 - antisense lncRNA gene predicted gene 14170
Gm22316 2 156386107 to 156386322 215 + unclassified non-coding RNA gene predicted gene, 22316
Rpl21-ps9 2 156386741 to 156387222 481 + pseudogene ribosomal protein L21, pseudogene 9
2900097C17Rik 2 156388065 to 156392979 4914 - lincRNA gene RIKEN cDNA 2900097C17 gene
Tssr27053 2 156392961 to 156392993 32 - TSS region transcription start site region 27053
Tssr27054 2 156392994 to 156393003 9 - TSS region transcription start site region 27054
Tssr21153 2 156401402 to 156401438 36 + TSS region transcription start site region 21153
1700057D03Rik 2 156401419 to 156402898 1479 unclassified gene RIKEN cDNA 1700057D03 gene
Tssr21154 2 156401442 to 156401449 7 + TSS region transcription start site region 21154
Gm14173 2 156410897 to 156411174 277 - pseudogene predicted gene 14173
Gm22758 2 156410929 to 156411024 95 - miRNA gene predicted gene, 22758
Tssr21155 2 156418675 to 156418708 33 + TSS region transcription start site region 21155
Cpgi12548 2 156420355 to 156421982 1627 CpG island CpG island 12548
Tssr21156 2 156420720 to 156420751 31 + TSS region transcription start site region 21156
Tssr21157 2 156420837 to 156420862 25 + TSS region transcription start site region 21157
Epb41l1 2 156420909 to 156543214 122305 + protein coding gene erythrocyte membrane protein band 4.1 like 1
Tssr21158 2 156421038 to 156421043 5 + TSS region transcription start site region 21158
Tssr21159 2 156421052 to 156421065 13 + TSS region transcription start site region 21159
Tssr21160 2 156421075 to 156421076 1 + TSS region transcription start site region 21160
Tssr21161 2 156421083 to 156421114 31 + TSS region transcription start site region 21161
Tssr21162 2 156421116 to 156421123 7 + TSS region transcription start site region 21162
Tssr21163 2 156421129 to 156421143 14 + TSS region transcription start site region 21163
Tssr21164 2 156421162 to 156421174 12 + TSS region transcription start site region 21164
Tssr21165 2 156432958 to 156432987 29 + TSS region transcription start site region 21165
Tssr21166 2 156432993 to 156433006 13 + TSS region transcription start site region 21166
Gm14225 2 156445033 to 156447608 2575 - antisense lncRNA gene predicted gene 14225
Gm14224 2 156451906 to 156455651 3745 - antisense lncRNA gene predicted gene 14224
Tssr21167 2 156457242 to 156457243 1 + TSS region transcription start site region 21167
Cpgi12549 2 156475152 to 156476293 1141 CpG island CpG island 12549
Tssr21168 2 156475507 to 156475561 54 + TSS region transcription start site region 21168
Tssr21169 2 156475688 to 156475693 5 + TSS region transcription start site region 21169
Tssr21170 2 156475711 to 156475738 27 + TSS region transcription start site region 21170
Tssr21171 2 156475803 to 156475834 31 + TSS region transcription start site region 21171
Tssr21172 2 156475844 to 156475862 18 + TSS region transcription start site region 21172
Tssr717 2 156475891 to 156475894 3 + TSS region transcription start site region 717
Tssr21173 2 156475916 to 156475934 18 + TSS region transcription start site region 21173
Cpgi12550 2 156482293 to 156482495 202 CpG island CpG island 12550
Gm33977 2 156486593 to 156499575 12982 - lncRNA gene predicted gene, 33977
Cpgi12551 2 156494985 to 156495145 160 CpG island CpG island 12551