Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:154847040-156256930

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293 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Raly 2 154791096 to 154867261 76165 + protein coding gene hnRNP-associated with lethal yellow
Tssr21047 2 154859692 to 154859710 18 + TSS region transcription start site region 21047
Tssr21048 2 154861836 to 154861863 27 + TSS region transcription start site region 21048
Eif2s2 2 154871410 to 154892906 21496 - protein coding gene eukaryotic translation initiation factor 2, subunit 2 (beta)
Tssr26968 2 154871484 to 154871492 8 - TSS region transcription start site region 26968
Tssr26969 2 154871551 to 154871575 24 - TSS region transcription start site region 26969
Tssr26970 2 154872066 to 154872077 11 - TSS region transcription start site region 26970
Tssr21049 2 154891807 to 154891815 8 + TSS region transcription start site region 21049
Cpgi12509 2 154892148 to 154893253 1105 CpG island CpG island 12509
Tssr26971 2 154892831 to 154892883 52 - TSS region transcription start site region 26971
Tssr26972 2 154892887 to 154892894 7 - TSS region transcription start site region 26972
Tssr26973 2 154892904 to 154892915 11 - TSS region transcription start site region 26973
Tssr21050 2 154892935 to 154892944 9 + TSS region transcription start site region 21050
Tssr21051 2 154892960 to 154892969 9 + TSS region transcription start site region 21051
Tssr21052 2 154893011 to 154893034 23 + TSS region transcription start site region 21052
Tssr26974 2 154899149 to 154899154 5 - TSS region transcription start site region 26974
a 2 154950204 to 155051012 100808 + protein coding gene nonagouti
Tssr21053 2 155013430 to 155013465 35 + TSS region transcription start site region 21053
Tssr21054 2 155013557 to 155013561 4 + TSS region transcription start site region 21054
Gm14226 2 155018266 to 155027104 8838 + protein coding gene predicted gene 14226
Tssr21055 2 155018910 to 155018921 11 + TSS region transcription start site region 21055
Cpgi12510 2 155019086 to 155019901 815 CpG island CpG island 12510
Tssr21056 2 155019148 to 155019157 9 + TSS region transcription start site region 21056
D2Ertd501e 2 155040551 to 155040802 251 DNA segment DNA segment, Chr 2, ERATO Doi 501, expressed
Gm39965 2 155044391 to 155045645 1254 - lncRNA gene predicted gene, 39965
Tssr21057 2 155047604 to 155047622 18 + TSS region transcription start site region 21057
Tssr21058 2 155047645 to 155047658 13 + TSS region transcription start site region 21058
Cpgi12511 2 155050492 to 155051125 633 CpG island CpG island 12511
Tssr26975 2 155050786 to 155050801 15 - TSS region transcription start site region 26975
Ahcy 2 155059310 to 155074497 15187 - protein coding gene S-adenosylhomocysteine hydrolase
Tssr26976 2 155065054 to 155065067 13 - TSS region transcription start site region 26976
Gm39966 2 155071044 to 155074357 3313 - lncRNA gene predicted gene, 39966
Cpgi12512 2 155073898 to 155074592 694 CpG island CpG island 12512
Tssr26977 2 155074456 to 155074502 46 - TSS region transcription start site region 26977
Gm45609 2 155074590 to 155098791 24201 + antisense lncRNA gene predicted gene 45609
Tssr21059 2 155096000 to 155096014 14 + TSS region transcription start site region 21059
Tssr21060 2 155096023 to 155096034 11 + TSS region transcription start site region 21060
Tssr21061 2 155096056 to 155096063 7 + TSS region transcription start site region 21061
2310005A03Rik 2 155097791 to 155100079 2288 - lincRNA gene RIKEN cDNA 2310005A03 gene
Tssr26978 2 155130014 to 155130037 23 - TSS region transcription start site region 26978
Tssr26979 2 155130043 to 155130055 12 - TSS region transcription start site region 26979
Cpgi12513 2 155133330 to 155134199 869 CpG island CpG island 12513
Tssr21062 2 155133486 to 155133497 11 + TSS region transcription start site region 21062
Tssr21063 2 155133501 to 155133552 51 + TSS region transcription start site region 21063
Itch 2 155133509 to 155226855 93346 + protein coding gene itchy, E3 ubiquitin protein ligase
Tssr21064 2 155195278 to 155195325 47 + TSS region transcription start site region 21064
Gm14227 2 155198632 to 155199260 628 - pseudogene predicted gene 14227
Tssr21065 2 155199616 to 155199618 2 + TSS region transcription start site region 21065
Tssr21066 2 155217812 to 155217824 12 + TSS region transcription start site region 21066
Tssr21067 2 155219653 to 155219658 5 + TSS region transcription start site region 21067
Tssr711 2 155219692 to 155219693 1 + TSS region transcription start site region 711
Cpgi12514 2 155236267 to 155237090 823 CpG island CpG island 12514
Tssr21068 2 155236529 to 155236599 70 + TSS region transcription start site region 21068
Dynlrb1 2 155236533 to 155250277 13744 + protein coding gene dynein light chain roadblock-type 1
Tssr21069 2 155236602 to 155236617 15 + TSS region transcription start site region 21069
Tssr21070 2 155246983 to 155246988 5 + TSS region transcription start site region 21070
Tssr21071 2 155247862 to 155247894 32 + TSS region transcription start site region 21071
Tssr21072 2 155249971 to 155250001 30 + TSS region transcription start site region 21072
Tssr712 2 155250003 to 155250014 11 + TSS region transcription start site region 712
Tssr26980 2 155250038 to 155250070 32 - TSS region transcription start site region 26980
Cpgi12515 2 155276036 to 155277454 1418 CpG island CpG island 12515
Tssr21073 2 155276339 to 155276350 11 + TSS region transcription start site region 21073
Map1lc3a 2 155276364 to 155278073 1709 + protein coding gene microtubule-associated protein 1 light chain 3 alpha
Tssr21074 2 155276418 to 155276474 56 + TSS region transcription start site region 21074
Tssr21075 2 155276480 to 155276494 14 + TSS region transcription start site region 21075
Tssr21076 2 155276503 to 155276553 50 + TSS region transcription start site region 21076
Tssr21077 2 155276582 to 155276592 10 + TSS region transcription start site region 21077
Tssr21078 2 155276596 to 155276614 18 + TSS region transcription start site region 21078
Tssr21079 2 155276619 to 155276620 1 + TSS region transcription start site region 21079
Tssr21080 2 155276717 to 155276772 55 + TSS region transcription start site region 21080
Tssr21081 2 155276890 to 155276915 25 + TSS region transcription start site region 21081
Tssr21082 2 155276916 to 155276930 14 + TSS region transcription start site region 21082
Tssr21083 2 155276932 to 155276955 23 + TSS region transcription start site region 21083
Tssr21084 2 155276963 to 155276981 18 + TSS region transcription start site region 21084
Tssr21085 2 155277080 to 155277106 26 + TSS region transcription start site region 21085
Pigu 2 155278243 to 155357424 79181 - protein coding gene phosphatidylinositol glycan anchor biosynthesis, class U
Tssr26981 2 155299649 to 155299677 28 - TSS region transcription start site region 26981
Tssr26982 2 155314579 to 155314590 11 - TSS region transcription start site region 26982
Mir695 2 155356817 to 155356925 108 + miRNA gene microRNA 695
Cpgi12516 2 155356947 to 155357605 658 CpG island CpG island 12516
Tssr26983 2 155357392 to 155357431 39 - TSS region transcription start site region 26983
Tssr26984 2 155357471 to 155357480 9 - TSS region transcription start site region 26984
Tssr713 2 155357859 to 155357862 3 + TSS region transcription start site region 713
Cpgi12517 2 155381398 to 155382434 1036 CpG island CpG island 12517
Tssr26985 2 155381680 to 155381687 7 - TSS region transcription start site region 26985
Trp53inp2 2 155381807 to 155389847 8040 + protein coding gene transformation related protein 53 inducible nuclear protein 2
Tssr21086 2 155381808 to 155381884 76 + TSS region transcription start site region 21086
Tssr21087 2 155382186 to 155382274 88 + TSS region transcription start site region 21087
Tssr21088 2 155382284 to 155382299 15 + TSS region transcription start site region 21088
Tssr21089 2 155383033 to 155383044 11 + TSS region transcription start site region 21089
Tssr21090 2 155383048 to 155383066 18 + TSS region transcription start site region 21090
Tssr21091 2 155383071 to 155383080 9 + TSS region transcription start site region 21091
Tssr21092 2 155384564 to 155384568 4 + TSS region transcription start site region 21092
Tssr21093 2 155385890 to 155385916 26 + TSS region transcription start site region 21093
Tssr21094 2 155385925 to 155385949 24 + TSS region transcription start site region 21094
Tssr21095 2 155386110 to 155386134 24 + TSS region transcription start site region 21095
Cpgi12518 2 155386502 to 155386891 389 CpG island CpG island 12518
Tssr21096 2 155386804 to 155386824 20 + TSS region transcription start site region 21096
Tssr21097 2 155386870 to 155386896 26 + TSS region transcription start site region 21097
Tssr21098 2 155386935 to 155386952 17 + TSS region transcription start site region 21098
Tssr21099 2 155386998 to 155387011 13 + TSS region transcription start site region 21099
Tssr21100 2 155387027 to 155387055 28 + TSS region transcription start site region 21100
Tssr21101 2 155389093 to 155389098 5 + TSS region transcription start site region 21101
Ncoa6 2 155390656 to 155473894 83238 - protein coding gene nuclear receptor coactivator 6
Tssr26986 2 155407734 to 155407753 19 - TSS region transcription start site region 26986
Tssr26987 2 155407826 to 155407838 12 - TSS region transcription start site region 26987
Tssr26988 2 155414974 to 155415006 32 - TSS region transcription start site region 26988
Gm17959 2 155427284 to 155427923 639 - pseudogene predicted gene, 17959
Tssr26989 2 155443079 to 155443081 2 - TSS region transcription start site region 26989
Tssr26990 2 155451062 to 155451068 6 - TSS region transcription start site region 26990
Gm14239 2 155459501 to 155460892 1391 - pseudogene predicted gene 14239
D030059C06Rik 2 155461073 to 155466828 5755 unclassified gene RIKEN cDNA D030059C06 gene
Cpgi12519 2 155472919 to 155474174 1255 CpG island CpG island 12519
Tssr26991 2 155473740 to 155473751 11 - TSS region transcription start site region 26991
Tssr26992 2 155473788 to 155473835 47 - TSS region transcription start site region 26992
Gm14238 2 155486047 to 155486369 322 - pseudogene predicted gene 14238
Ggt7 2 155490379 to 155514858 24479 - protein coding gene gamma-glutamyltransferase 7
Tssr26993 2 155495582 to 155495584 2 - TSS region transcription start site region 26993
Tssr26994 2 155499120 to 155499128 8 - TSS region transcription start site region 26994
Cpgi12520 2 155506344 to 155506637 293 CpG island CpG island 12520
Cpgi12521 2 155514528 to 155515039 511 CpG island CpG island 12521
Tssr26995 2 155514796 to 155514860 64 - TSS region transcription start site region 26995
Cpgi12522 2 155517505 to 155518748 1243 CpG island CpG island 12522
Tssr21102 2 155517684 to 155517714 30 + TSS region transcription start site region 21102
Acss2 2 155517953 to 155562746 44793 + protein coding gene acyl-CoA synthetase short-chain family member 2
Tssr21103 2 155518026 to 155518088 62 + TSS region transcription start site region 21103
Tssr21104 2 155518096 to 155518097 1 + TSS region transcription start site region 21104
Mipep-ps 2 155542647 to 155542937 290 + pseudogene mitochondrial intermediate peptidase, pseudogene
Gm20637 2 155546385 to 155546846 461 + pseudogene predicted gene 20637
Acss2os 2 155547040 to 155556930 9890 - antisense lncRNA gene acyl-CoA synthetase short-chain family member 2, opposite strand
Tssr26996 2 155553084 to 155553090 6 - TSS region transcription start site region 26996
Tssr21105 2 155561105 to 155561128 23 + TSS region transcription start site region 21105
Gss 2 155563181 to 155592810 29629 - protein coding gene glutathione synthetase
Tssr21106 2 155567323 to 155567326 3 + TSS region transcription start site region 21106
Tssr21107 2 155568105 to 155568126 21 + TSS region transcription start site region 21107
Tssr21108 2 155568174 to 155568179 5 + TSS region transcription start site region 21108
Tssr26997 2 155582656 to 155582668 12 - TSS region transcription start site region 26997
Gssos2 2 155591131 to 155592851 1720 + antisense lncRNA gene glutathione synthase, opposite strand 2
Cpgi12523 2 155592267 to 155593070 803 CpG island CpG island 12523
Gssos1 2 155592319 to 155594955 2636 + antisense lncRNA gene glutathione synthase, opposite strand 1
Tssr26998 2 155592708 to 155592770 62 - TSS region transcription start site region 26998
Gm14257 2 155593565 to 155594475 910 - antisense lncRNA gene predicted gene 14257
D2Mit494 2 155607805 to 155607920 115 DNA segment DNA Segment, Chr 2 Massachusetts Institute of Technology 494
Tssr21109 2 155611175 to 155611216 41 + TSS region transcription start site region 21109
Tssr21110 2 155611238 to 155611247 9 + TSS region transcription start site region 21110
Myh7b 2 155611243 to 155634307 23064 + protein coding gene myosin, heavy chain 7B, cardiac muscle, beta
Cpgi12524 2 155613315 to 155613660 345 CpG island CpG island 12524
Cpgi12525 2 155620877 to 155621080 203 CpG island CpG island 12525
Mir499 2 155622880 to 155622958 78 + miRNA gene microRNA 499
Cpgi12526 2 155628964 to 155629899 935 CpG island CpG island 12526
Tssr21111 2 155629366 to 155629385 19 + TSS region transcription start site region 21111
Cpgi12527 2 155630333 to 155630840 507 CpG island CpG island 12527
Trpc4ap 2 155634277 to 155692384 58107 - protein coding gene transient receptor potential cation channel, subfamily C, member 4 associated protein
Tssr26999 2 155640641 to 155640669 28 - TSS region transcription start site region 26999
Tssr27000 2 155640712 to 155640723 11 - TSS region transcription start site region 27000
Tssr27001 2 155640742 to 155640756 14 - TSS region transcription start site region 27001
D2Mit451 2 155649655 to 155649770 115 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 451
D2Dcr110 2 155649660 to 155649774 114 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 110
Tssr27002 2 155651824 to 155651829 5 - TSS region transcription start site region 27002
Tssr27003 2 155652801 to 155652805 4 - TSS region transcription start site region 27003
Gm22334 2 155652892 to 155653024 132 - snoRNA gene predicted gene, 22334
Tssr27004 2 155653535 to 155653554 19 - TSS region transcription start site region 27004
Tssr27005 2 155668443 to 155668447 4 - TSS region transcription start site region 27005
Tssr21112 2 155679820 to 155679823 3 + TSS region transcription start site region 21112
Cpgi12528 2 155691709 to 155692568 859 CpG island CpG island 12528
Tssr27006 2 155692317 to 155692339 22 - TSS region transcription start site region 27006
Tssr27007 2 155692355 to 155692364 9 - TSS region transcription start site region 27007
Tssr27008 2 155692376 to 155692387 11 - TSS region transcription start site region 27008
Edem2 2 155701677 to 155729475 27798 - protein coding gene ER degradation enhancer, mannosidase alpha-like 2
Cpgi12529 2 155728889 to 155729572 683 CpG island CpG island 12529
Tssr27009 2 155729359 to 155729443 84 - TSS region transcription start site region 27009
Gm17581 2 155735810 to 155735866 56 - protein coding gene predicted gene, 17581
Tssr21113 2 155747139 to 155747148 9 + TSS region transcription start site region 21113
Tssr21114 2 155747177 to 155747189 12 + TSS region transcription start site region 21114
Tssr21115 2 155750779 to 155750794 15 + TSS region transcription start site region 21115
Tssr21116 2 155750805 to 155750819 14 + TSS region transcription start site region 21116
Cpgi12530 2 155750892 to 155751426 534 CpG island CpG island 12530
Tssr21117 2 155751110 to 155751120 10 + TSS region transcription start site region 21117
Procr 2 155751125 to 155755478 4353 + protein coding gene protein C receptor, endothelial
Tssr21118 2 155751199 to 155751284 85 + TSS region transcription start site region 21118
Tssr21119 2 155751324 to 155751335 11 + TSS region transcription start site region 21119
Tssr21120 2 155751340 to 155751370 30 + TSS region transcription start site region 21120
Cpgi12531 2 155753560 to 155753766 206 CpG island CpG island 12531
Tssr21121 2 155754945 to 155754957 12 + TSS region transcription start site region 21121
Tssr21122 2 155754984 to 155754994 10 + TSS region transcription start site region 21122
Tssr21123 2 155755000 to 155755014 14 + TSS region transcription start site region 21123
Tssr21124 2 155755055 to 155755068 13 + TSS region transcription start site region 21124
Cpgi12532 2 155774652 to 155776335 1683 CpG island CpG island 12532
Tssr21125 2 155775333 to 155775392 59 + TSS region transcription start site region 21125
Mmp24 2 155775342 to 155818366 43024 + protein coding gene matrix metallopeptidase 24
Tssr21126 2 155778673 to 155778683 10 + TSS region transcription start site region 21126
Gm46772 2 155792303 to 155798059 5756 - lncRNA gene predicted gene, 46772
Cpgi12533 2 155812159 to 155812336 177 CpG island CpG island 12533
BC029722 2 155817730 to 155819203 1473 - lincRNA gene cDNA sequence BC029722
Cpgi12534 2 155818847 to 155819396 549 CpG island CpG island 12534
Tssr27010 2 155818866 to 155818895 29 - TSS region transcription start site region 27010
Tssr27011 2 155819181 to 155819190 9 - TSS region transcription start site region 27011
Tssr27012 2 155819196 to 155819269 73 - TSS region transcription start site region 27012
Tssr27013 2 155819404 to 155819434 30 - TSS region transcription start site region 27013
Eif6 2 155819837 to 155826925 7088 - protein coding gene eukaryotic translation initiation factor 6