Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:154247035-154958706

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133 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cplaq15 2 111085773 to 154512747 43426974 QTL circadian period of locomotor activity 15
Bpifb9a 2 154257854 to 154271245 13391 + protein coding gene BPI fold containing family B, member 9A
Tssr21010 2 154273096 to 154273099 3 + TSS region transcription start site region 21010
Gm14197 2 154284213 to 154285261 1048 - pseudogene predicted gene 14197
Tssr26937 2 154303845 to 154303849 4 - TSS region transcription start site region 26937
Tssr21011 2 154307202 to 154307208 6 + TSS region transcription start site region 21011
Bpifb9b 2 154307227 to 154320646 13419 + protein coding gene BPI fold containing family B, member 9B
Tssr709 2 154309490 to 154309493 3 + TSS region transcription start site region 709
Cdk5rap1 2 154335380 to 154373010 37630 - protein coding gene CDK5 regulatory subunit associated protein 1
Tssr26938 2 154354236 to 154354288 52 - TSS region transcription start site region 26938
Tssr26939 2 154363973 to 154363989 16 - TSS region transcription start site region 26939
Tssr26940 2 154364036 to 154364049 13 - TSS region transcription start site region 26940
Cpgi12495 2 154372256 to 154372876 620 CpG island CpG island 12495
Tssr26941 2 154372702 to 154372735 33 - TSS region transcription start site region 26941
Snta1 2 154376314 to 154408084 31770 - protein coding gene syntrophin, acidic 1
Cpgi12496 2 154380999 to 154381166 167 CpG island CpG island 12496
Cpgi12497 2 154407265 to 154408550 1285 CpG island CpG island 12497
Tssr26942 2 154407980 to 154408003 23 - TSS region transcription start site region 26942
Tssr26943 2 154408035 to 154408071 36 - TSS region transcription start site region 26943
Tssr26944 2 154408078 to 154408116 38 - TSS region transcription start site region 26944
Tssr26945 2 154416463 to 154416466 3 - TSS region transcription start site region 26945
Gm39962 2 154416499 to 154421329 4830 - lncRNA gene predicted gene, 39962
Tssr26946 2 154421262 to 154421276 14 - TSS region transcription start site region 26946
Tssr26947 2 154421308 to 154421320 12 - TSS region transcription start site region 26947
Tssr21012 2 154427035 to 154427046 11 + TSS region transcription start site region 21012
Tssr21013 2 154427071 to 154427089 18 + TSS region transcription start site region 21013
Tssr21014 2 154428739 to 154428768 29 + TSS region transcription start site region 21014
Cpgi12498 2 154436042 to 154437167 1125 CpG island CpG island 12498
Tssr21015 2 154436437 to 154436497 60 + TSS region transcription start site region 21015
Cbfa2t2 2 154436481 to 154539356 102875 + protein coding gene CBFA2/RUNX1 translocation partner 2
Tssr21016 2 154449493 to 154449496 3 + TSS region transcription start site region 21016
Tssr21017 2 154472277 to 154472279 2 + TSS region transcription start site region 21017
Tssr21018 2 154502699 to 154502702 3 + TSS region transcription start site region 21018
Gm18767 2 154507683 to 154508290 607 - pseudogene predicted gene, 18767
D2Mit286 2 154512609 to 154512747 138 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 286
Tssr21019 2 154536311 to 154536313 2 + TSS region transcription start site region 21019
Necab3 2 154544399 to 154558890 14491 - protein coding gene N-terminal EF-hand calcium binding protein 3
Tssr26948 2 154548758 to 154548780 22 - TSS region transcription start site region 26948
Tssr21020 2 154548854 to 154548863 9 + TSS region transcription start site region 21020
Tssr21021 2 154548867 to 154548884 17 + TSS region transcription start site region 21021
Tssr21022 2 154548889 to 154548932 43 + TSS region transcription start site region 21022
1700003F12Rik 2 154548904 to 154550050 1146 + protein coding gene RIKEN cDNA 1700003F12 gene
Tssr21023 2 154549021 to 154549039 18 + TSS region transcription start site region 21023
Cpgi12499 2 154549237 to 154550258 1021 CpG island CpG island 12499
Tssr21024 2 154551771 to 154551786 15 + TSS region transcription start site region 21024
Actl10 2 154551776 to 154553276 1500 + protein coding gene actin-like 10
Tssr21025 2 154551788 to 154551798 10 + TSS region transcription start site region 21025
Tssr21026 2 154551838 to 154551844 6 + TSS region transcription start site region 21026
Cpgi12500 2 154551924 to 154552941 1017 CpG island CpG island 12500
Cpgi12501 2 154558550 to 154559047 497 CpG island CpG island 12501
Tssr26949 2 154558834 to 154558897 63 - TSS region transcription start site region 26949
E2f1 2 154559407 to 154569892 10485 - protein coding gene E2F transcription factor 1
D2Ertd48e 2 154567496 to 154567698 202 DNA segment DNA segment, Chr 2, ERATO Doi 48, expressed
Cpgi12502 2 154568867 to 154570409 1542 CpG island CpG island 12502
Tssr26950 2 154569150 to 154569196 46 - TSS region transcription start site region 26950
Tssr26951 2 154569381 to 154569401 20 - TSS region transcription start site region 26951
Tssr26952 2 154569788 to 154569799 11 - TSS region transcription start site region 26952
Tssr26953 2 154569816 to 154569825 9 - TSS region transcription start site region 26953
Tssr26954 2 154569845 to 154569874 29 - TSS region transcription start site region 26954
Tssr710 2 154580737 to 154580738 1 + TSS region transcription start site region 710
Gm39963 2 154581810 to 154583630 1820 - lncRNA gene predicted gene, 39963
Pxmp4 2 154585758 to 154603708 17950 - protein coding gene peroxisomal membrane protein 4
2510019K15Rik 2 154599899 to 154601245 1346 unclassified gene RIKEN cDNA 2510019K15 gene
Cpgi12503 2 154603355 to 154603803 448 CpG island CpG island 12503
Tssr26955 2 154603635 to 154603653 18 - TSS region transcription start site region 26955
Tssr26956 2 154603658 to 154603693 35 - TSS region transcription start site region 26956
Tssr26957 2 154603698 to 154603714 16 - TSS region transcription start site region 26957
Tssr21027 2 154603963 to 154603968 5 + TSS region transcription start site region 21027
Tssr21028 2 154604017 to 154604029 12 + TSS region transcription start site region 21028
4930519P11Rik 2 154612937 to 154613437 500 - protein coding gene RIKEN cDNA 4930519P11 gene
Cpgi12504 2 154612988 to 154614287 1299 CpG island CpG island 12504
Tssr26958 2 154613203 to 154613227 24 - TSS region transcription start site region 26958
Zfp341 2 154613297 to 154646821 33524 + protein coding gene zinc finger protein 341
Tssr21029 2 154613327 to 154613369 42 + TSS region transcription start site region 21029
Tssr26959 2 154613380 to 154613416 36 - TSS region transcription start site region 26959
Tssr26960 2 154613425 to 154613444 19 - TSS region transcription start site region 26960
Gm14198 2 154630002 to 154632636 2634 - antisense lncRNA gene predicted gene 14198
Tssr26961 2 154632642 to 154632662 20 - TSS region transcription start site region 26961
Cpgi12505 2 154645657 to 154645916 259 CpG island CpG island 12505
Tssr21030 2 154650858 to 154650865 7 + TSS region transcription start site region 21030
Tssr21031 2 154650911 to 154650921 10 + TSS region transcription start site region 21031
Cpgi12506 2 154656815 to 154657510 695 CpG island CpG island 12506
Tssr21032 2 154656885 to 154656894 9 + TSS region transcription start site region 21032
Tssr21033 2 154656913 to 154656924 11 + TSS region transcription start site region 21033
Tssr21034 2 154656959 to 154657108 149 + TSS region transcription start site region 21034
Chmp4b 2 154657026 to 154694783 37757 + protein coding gene charged multivesicular body protein 4B
Tssr21035 2 154657113 to 154657134 21 + TSS region transcription start site region 21035
Tssr21036 2 154657137 to 154657161 24 + TSS region transcription start site region 21036
Tssr21037 2 154657165 to 154657180 15 + TSS region transcription start site region 21037
Tssr21038 2 154657214 to 154657237 23 + TSS region transcription start site region 21038
Tssr26962 2 154657972 to 154657988 16 - TSS region transcription start site region 26962
Tssr26963 2 154657999 to 154658034 35 - TSS region transcription start site region 26963
Tssr26964 2 154658041 to 154658050 9 - TSS region transcription start site region 26964
Tssr21039 2 154664588 to 154664614 26 + TSS region transcription start site region 21039
Tssr21040 2 154672429 to 154672434 5 + TSS region transcription start site region 21040
9030607L20Rik 2 154679983 to 154686742 6759 + lncRNA gene RIKEN cDNA 9030607L20 gene
Tssr26965 2 154689546 to 154689599 53 - TSS region transcription start site region 26965
Tssr21041 2 154689599 to 154689622 23 + TSS region transcription start site region 21041
Tssr21042 2 154689648 to 154689673 25 + TSS region transcription start site region 21042
Tssr26966 2 154691231 to 154691279 48 - TSS region transcription start site region 26966
Tssr21043 2 154691265 to 154691288 23 + TSS region transcription start site region 21043
Tssr21044 2 154694204 to 154694226 22 + TSS region transcription start site region 21044
Cpgi12507 2 154702997 to 154703260 263 CpG island CpG island 12507
Rpl5-ps2 2 154703809 to 154704699 890 + pseudogene ribisomal protein L5, pseudogene 2
Hrec 2 154711297 to 159586530 4875233 QTL hemotopoietic response to early cytokines
D2Mit495 2 154711297 to 154711400 103 DNA segment DNA Segment, Chr 2 Massachusetts Institute of Technology 495
Gm14215 2 154713502 to 154713722 220 - pseudogene predicted gene 14215
Gm14216 2 154722392 to 154725802 3410 - lincRNA gene predicted gene 14216
Tssr26967 2 154738484 to 154738490 6 - TSS region transcription start site region 26967
Gm38598 2 154749103 to 154780308 31205 + lncRNA gene predicted gene, 38598
Gm14214 2 154769255 to 154770030 775 - pseudogene predicted gene 14214
1700089I07Rik 2 154782331 to 154782678 347 unclassified gene RIKEN cDNA 1700089I07 gene
Cpgi12508 2 154790541 to 154792344 1803 CpG island CpG island 12508
Raly 2 154791096 to 154867261 76165 + protein coding gene hnRNP-associated with lethal yellow
Tssr21045 2 154791344 to 154791362 18 + TSS region transcription start site region 21045
Tssr21046 2 154805253 to 154805269 16 + TSS region transcription start site region 21046
8030497I03Rik 2 154811571 to 154813159 1588 unclassified gene RIKEN cDNA 8030497I03 gene
Tssr21047 2 154859692 to 154859710 18 + TSS region transcription start site region 21047
Tssr21048 2 154861836 to 154861863 27 + TSS region transcription start site region 21048
Eif2s2 2 154871410 to 154892906 21496 - protein coding gene eukaryotic translation initiation factor 2, subunit 2 (beta)
Tssr26968 2 154871484 to 154871492 8 - TSS region transcription start site region 26968
Tssr26969 2 154871551 to 154871575 24 - TSS region transcription start site region 26969
Tssr26970 2 154872066 to 154872077 11 - TSS region transcription start site region 26970
Tssr21049 2 154891807 to 154891815 8 + TSS region transcription start site region 21049
Cpgi12509 2 154892148 to 154893253 1105 CpG island CpG island 12509
Tssr26971 2 154892831 to 154892883 52 - TSS region transcription start site region 26971
Tssr26972 2 154892887 to 154892894 7 - TSS region transcription start site region 26972
Tssr26973 2 154892904 to 154892915 11 - TSS region transcription start site region 26973
Tssr21050 2 154892935 to 154892944 9 + TSS region transcription start site region 21050
Tssr21051 2 154892960 to 154892969 9 + TSS region transcription start site region 21051
Tssr21052 2 154893011 to 154893034 23 + TSS region transcription start site region 21052
Tssr26974 2 154899149 to 154899154 5 - TSS region transcription start site region 26974
a 2 154950204 to 155051012 100808 + protein coding gene nonagouti