Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:153997227-154630646

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173 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cplaq15 2 111085773 to 154512747 43426974 QTL circadian period of locomotor activity 15
Bpifa6 2 153974945 to 154000495 25550 + protein coding gene BPI fold containing family A, member 6
Tssr20944 2 154000222 to 154000229 7 + TSS region transcription start site region 20944
Tssr20945 2 154000437 to 154000461 24 + TSS region transcription start site region 20945
Tssr20946 2 154008227 to 154008244 17 + TSS region transcription start site region 20946
Tssr20947 2 154008256 to 154008274 18 + TSS region transcription start site region 20947
Tssr20948 2 154008275 to 154008277 2 + TSS region transcription start site region 20948
Bpifa2 2 154008276 to 154016073 7797 + protein coding gene BPI fold containing family A, member 2
Tssr20949 2 154008329 to 154008343 14 + TSS region transcription start site region 20949
Tssr20950 2 154009103 to 154009111 8 + TSS region transcription start site region 20950
Tssr20951 2 154009165 to 154009174 9 + TSS region transcription start site region 20951
Tssr20952 2 154009187 to 154009194 7 + TSS region transcription start site region 20952
Tssr706 2 154009205 to 154009210 5 + TSS region transcription start site region 706
Tssr20953 2 154009753 to 154009758 5 + TSS region transcription start site region 20953
Tssr20954 2 154009791 to 154009801 10 + TSS region transcription start site region 20954
Tssr20955 2 154009808 to 154009830 22 + TSS region transcription start site region 20955
Tssr20956 2 154009861 to 154009872 11 + TSS region transcription start site region 20956
Tssr20957 2 154010523 to 154010535 12 + TSS region transcription start site region 20957
Tssr707 2 154010546 to 154010550 4 + TSS region transcription start site region 707
Tssr20958 2 154011350 to 154011376 26 + TSS region transcription start site region 20958
Tssr20959 2 154011412 to 154011418 6 + TSS region transcription start site region 20959
Tssr20960 2 154011440 to 154011451 11 + TSS region transcription start site region 20960
Tssr20961 2 154011452 to 154011458 6 + TSS region transcription start site region 20961
D2Mit511 2 154012419 to 154012538 119 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology-511
Tssr20962 2 154013674 to 154013687 13 + TSS region transcription start site region 20962
Tssr20963 2 154013708 to 154013729 21 + TSS region transcription start site region 20963
Tssr20964 2 154014913 to 154014922 9 + TSS region transcription start site region 20964
Tssr20965 2 154014933 to 154014941 8 + TSS region transcription start site region 20965
Tssr20966 2 154015947 to 154015969 22 + TSS region transcription start site region 20966
Tssr26920 2 154015965 to 154015984 19 - TSS region transcription start site region 26920
Tssr26921 2 154015986 to 154016000 14 - TSS region transcription start site region 26921
Gm21850 2 154052269 to 154056639 4370 + pseudogene predicted gene, 21850
Gm14497 2 154086835 to 154087414 579 - pseudogene predicted gene 14497
Tssr26922 2 154094831 to 154094838 7 - TSS region transcription start site region 26922
Tssr20967 2 154130332 to 154130356 24 + TSS region transcription start site region 20967
Bpifa3 2 154130336 to 154138356 8020 + protein coding gene BPI fold containing family A, member 3
Tssr20968 2 154130367 to 154130374 7 + TSS region transcription start site region 20968
Bpifa1 2 154142880 to 154149217 6337 + protein coding gene BPI fold containing family A, member 1
Tssr20969 2 154142880 to 154142885 5 + TSS region transcription start site region 20969
Tssr20970 2 154162606 to 154162613 7 + TSS region transcription start site region 20970
Bpifa5 2 154162607 to 154168446 5839 + protein coding gene BPI fold containing family A, member 5
Tssr20971 2 154190749 to 154190759 10 + TSS region transcription start site region 20971
Tssr20972 2 154190763 to 154190768 5 + TSS region transcription start site region 20972
Tssr20973 2 154190776 to 154190782 6 + TSS region transcription start site region 20973
Tssr20974 2 154190806 to 154190832 26 + TSS region transcription start site region 20974
Bpifb1 2 154190818 to 154220343 29525 + protein coding gene BPI fold containing family B, member 1
Tssr20975 2 154190833 to 154190857 24 + TSS region transcription start site region 20975
Tssr20976 2 154191268 to 154191273 5 + TSS region transcription start site region 20976
Tssr20977 2 154193355 to 154193358 3 + TSS region transcription start site region 20977
Tssr20978 2 154200308 to 154200320 12 + TSS region transcription start site region 20978
Tssr20979 2 154200323 to 154200334 11 + TSS region transcription start site region 20979
Tssr20980 2 154200352 to 154200365 13 + TSS region transcription start site region 20980
Tssr20981 2 154200371 to 154200385 14 + TSS region transcription start site region 20981
Tssr20982 2 154202567 to 154202580 13 + TSS region transcription start site region 20982
Tssr20983 2 154202620 to 154202629 9 + TSS region transcription start site region 20983
Tssr708 2 154202633 to 154202639 6 + TSS region transcription start site region 708
Tssr20984 2 154202666 to 154202690 24 + TSS region transcription start site region 20984
Tssr26923 2 154202690 to 154202732 42 - TSS region transcription start site region 26923
Tssr20985 2 154204694 to 154204709 15 + TSS region transcription start site region 20985
Tssr20986 2 154204720 to 154204730 10 + TSS region transcription start site region 20986
Tssr20987 2 154204753 to 154204769 16 + TSS region transcription start site region 20987
Tssr20988 2 154204777 to 154204786 9 + TSS region transcription start site region 20988
Tssr20989 2 154205416 to 154205438 22 + TSS region transcription start site region 20989
Tssr26924 2 154205461 to 154205475 14 - TSS region transcription start site region 26924
Tssr20990 2 154205478 to 154205495 17 + TSS region transcription start site region 20990
Tssr20991 2 154206430 to 154206433 3 + TSS region transcription start site region 20991
Tssr26925 2 154206435 to 154206457 22 - TSS region transcription start site region 26925
Tssr20992 2 154206448 to 154206458 10 + TSS region transcription start site region 20992
Tssr20993 2 154206465 to 154206497 32 + TSS region transcription start site region 20993
Tssr26926 2 154206475 to 154206485 10 - TSS region transcription start site region 26926
Tssr20994 2 154206499 to 154206505 6 + TSS region transcription start site region 20994
Tssr20995 2 154206519 to 154206525 6 + TSS region transcription start site region 20995
Tssr20996 2 154207137 to 154207146 9 + TSS region transcription start site region 20996
Tssr26927 2 154207156 to 154207171 15 - TSS region transcription start site region 26927
Tssr26928 2 154209897 to 154209938 41 - TSS region transcription start site region 26928
Tssr26929 2 154211521 to 154211534 13 - TSS region transcription start site region 26929
Tssr20997 2 154211521 to 154211537 16 + TSS region transcription start site region 20997
Tssr20998 2 154212973 to 154212978 5 + TSS region transcription start site region 20998
Tssr20999 2 154212998 to 154213009 11 + TSS region transcription start site region 20999
Tssr26930 2 154213007 to 154213031 24 - TSS region transcription start site region 26930
Tssr21000 2 154213015 to 154213025 10 + TSS region transcription start site region 21000
Tssr21001 2 154213038 to 154213061 23 + TSS region transcription start site region 21001
Tssr21002 2 154214007 to 154214018 11 + TSS region transcription start site region 21002
Tssr21003 2 154214021 to 154214054 33 + TSS region transcription start site region 21003
Tssr26931 2 154214043 to 154214056 13 - TSS region transcription start site region 26931
Tssr21004 2 154214064 to 154214075 11 + TSS region transcription start site region 21004
Tssr26932 2 154214067 to 154214080 13 - TSS region transcription start site region 26932
Tssr21005 2 154214092 to 154214118 26 + TSS region transcription start site region 21005
Tssr21006 2 154215258 to 154215270 12 + TSS region transcription start site region 21006
Tssr26933 2 154215293 to 154215313 20 - TSS region transcription start site region 26933
Tssr26934 2 154216243 to 154216267 24 - TSS region transcription start site region 26934
Tssr21007 2 154217167 to 154217209 42 + TSS region transcription start site region 21007
Tssr21008 2 154220180 to 154220210 30 + TSS region transcription start site region 21008
Tssr26935 2 154220210 to 154220230 20 - TSS region transcription start site region 26935
Tssr26936 2 154220312 to 154220326 14 - TSS region transcription start site region 26936
Tssr21009 2 154223737 to 154223776 39 + TSS region transcription start site region 21009
Bpifb5 2 154223742 to 154240902 17160 + protein coding gene BPI fold containing family B, member 5
Bpifb9a 2 154257854 to 154271245 13391 + protein coding gene BPI fold containing family B, member 9A
Tssr21010 2 154273096 to 154273099 3 + TSS region transcription start site region 21010
Gm14197 2 154284213 to 154285261 1048 - pseudogene predicted gene 14197
Tssr26937 2 154303845 to 154303849 4 - TSS region transcription start site region 26937
Tssr21011 2 154307202 to 154307208 6 + TSS region transcription start site region 21011
Bpifb9b 2 154307227 to 154320646 13419 + protein coding gene BPI fold containing family B, member 9B
Tssr709 2 154309490 to 154309493 3 + TSS region transcription start site region 709
Cdk5rap1 2 154335380 to 154373010 37630 - protein coding gene CDK5 regulatory subunit associated protein 1
Tssr26938 2 154354236 to 154354288 52 - TSS region transcription start site region 26938
Tssr26939 2 154363973 to 154363989 16 - TSS region transcription start site region 26939
Tssr26940 2 154364036 to 154364049 13 - TSS region transcription start site region 26940
Cpgi12495 2 154372256 to 154372876 620 CpG island CpG island 12495
Tssr26941 2 154372702 to 154372735 33 - TSS region transcription start site region 26941
Snta1 2 154376314 to 154408084 31770 - protein coding gene syntrophin, acidic 1
Cpgi12496 2 154380999 to 154381166 167 CpG island CpG island 12496
Cpgi12497 2 154407265 to 154408550 1285 CpG island CpG island 12497
Tssr26942 2 154407980 to 154408003 23 - TSS region transcription start site region 26942
Tssr26943 2 154408035 to 154408071 36 - TSS region transcription start site region 26943
Tssr26944 2 154408078 to 154408116 38 - TSS region transcription start site region 26944
Tssr26945 2 154416463 to 154416466 3 - TSS region transcription start site region 26945
Gm39962 2 154416499 to 154421329 4830 - lncRNA gene predicted gene, 39962
Tssr26946 2 154421262 to 154421276 14 - TSS region transcription start site region 26946
Tssr26947 2 154421308 to 154421320 12 - TSS region transcription start site region 26947
Tssr21012 2 154427035 to 154427046 11 + TSS region transcription start site region 21012
Tssr21013 2 154427071 to 154427089 18 + TSS region transcription start site region 21013
Tssr21014 2 154428739 to 154428768 29 + TSS region transcription start site region 21014
Cpgi12498 2 154436042 to 154437167 1125 CpG island CpG island 12498
Tssr21015 2 154436437 to 154436497 60 + TSS region transcription start site region 21015
Cbfa2t2 2 154436481 to 154539356 102875 + protein coding gene CBFA2/RUNX1 translocation partner 2
Tssr21016 2 154449493 to 154449496 3 + TSS region transcription start site region 21016
Tssr21017 2 154472277 to 154472279 2 + TSS region transcription start site region 21017
Tssr21018 2 154502699 to 154502702 3 + TSS region transcription start site region 21018
Gm18767 2 154507683 to 154508290 607 - pseudogene predicted gene, 18767
D2Mit286 2 154512609 to 154512747 138 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 286
Tssr21019 2 154536311 to 154536313 2 + TSS region transcription start site region 21019
Necab3 2 154544399 to 154558890 14491 - protein coding gene N-terminal EF-hand calcium binding protein 3
Tssr26948 2 154548758 to 154548780 22 - TSS region transcription start site region 26948
Tssr21020 2 154548854 to 154548863 9 + TSS region transcription start site region 21020
Tssr21021 2 154548867 to 154548884 17 + TSS region transcription start site region 21021
Tssr21022 2 154548889 to 154548932 43 + TSS region transcription start site region 21022
1700003F12Rik 2 154548904 to 154550050 1146 + protein coding gene RIKEN cDNA 1700003F12 gene
Tssr21023 2 154549021 to 154549039 18 + TSS region transcription start site region 21023
Cpgi12499 2 154549237 to 154550258 1021 CpG island CpG island 12499
Tssr21024 2 154551771 to 154551786 15 + TSS region transcription start site region 21024
Actl10 2 154551776 to 154553276 1500 + protein coding gene actin-like 10
Tssr21025 2 154551788 to 154551798 10 + TSS region transcription start site region 21025
Tssr21026 2 154551838 to 154551844 6 + TSS region transcription start site region 21026
Cpgi12500 2 154551924 to 154552941 1017 CpG island CpG island 12500
Cpgi12501 2 154558550 to 154559047 497 CpG island CpG island 12501
Tssr26949 2 154558834 to 154558897 63 - TSS region transcription start site region 26949
E2f1 2 154559407 to 154569892 10485 - protein coding gene E2F transcription factor 1
D2Ertd48e 2 154567496 to 154567698 202 DNA segment DNA segment, Chr 2, ERATO Doi 48, expressed
Cpgi12502 2 154568867 to 154570409 1542 CpG island CpG island 12502
Tssr26950 2 154569150 to 154569196 46 - TSS region transcription start site region 26950
Tssr26951 2 154569381 to 154569401 20 - TSS region transcription start site region 26951
Tssr26952 2 154569788 to 154569799 11 - TSS region transcription start site region 26952
Tssr26953 2 154569816 to 154569825 9 - TSS region transcription start site region 26953
Tssr26954 2 154569845 to 154569874 29 - TSS region transcription start site region 26954
Tssr710 2 154580737 to 154580738 1 + TSS region transcription start site region 710
Gm39963 2 154581810 to 154583630 1820 - lncRNA gene predicted gene, 39963
Pxmp4 2 154585758 to 154603708 17950 - protein coding gene peroxisomal membrane protein 4
2510019K15Rik 2 154599899 to 154601245 1346 unclassified gene RIKEN cDNA 2510019K15 gene
Cpgi12503 2 154603355 to 154603803 448 CpG island CpG island 12503
Tssr26955 2 154603635 to 154603653 18 - TSS region transcription start site region 26955
Tssr26956 2 154603658 to 154603693 35 - TSS region transcription start site region 26956
Tssr26957 2 154603698 to 154603714 16 - TSS region transcription start site region 26957
Tssr21027 2 154603963 to 154603968 5 + TSS region transcription start site region 21027
Tssr21028 2 154604017 to 154604029 12 + TSS region transcription start site region 21028
4930519P11Rik 2 154612937 to 154613437 500 - protein coding gene RIKEN cDNA 4930519P11 gene
Cpgi12504 2 154612988 to 154614287 1299 CpG island CpG island 12504
Tssr26958 2 154613203 to 154613227 24 - TSS region transcription start site region 26958
Zfp341 2 154613297 to 154646821 33524 + protein coding gene zinc finger protein 341
Tssr21029 2 154613327 to 154613369 42 + TSS region transcription start site region 21029
Tssr26959 2 154613380 to 154613416 36 - TSS region transcription start site region 26959
Tssr26960 2 154613425 to 154613444 19 - TSS region transcription start site region 26960
Gm14198 2 154630002 to 154632636 2634 - antisense lncRNA gene predicted gene 14198