Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:153167035-153547048

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83 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tm9sf4 2 153161303 to 153210466 49163 + protein coding gene transmembrane 9 superfamily protein member 4
D2Mit450 2 153180362 to 153180506 144 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 450
Tssr26884 2 153182472 to 153182492 20 - TSS region transcription start site region 26884
Tssr26885 2 153191486 to 153191497 11 - TSS region transcription start site region 26885
Tssr26886 2 153191521 to 153191536 15 - TSS region transcription start site region 26886
Tssr20878 2 153191794 to 153191808 14 + TSS region transcription start site region 20878
Gm20094 2 153196733 to 153196988 255 - pseudogene predicted gene, 20094
Tspyl3 2 153222370 to 153225441 3071 - protein coding gene TSPY-like 3
Cpgi12481 2 153224990 to 153225440 450 CpG island CpG island 12481
Tssr26887 2 153225033 to 153225052 19 - TSS region transcription start site region 26887
Tssr26888 2 153225377 to 153225394 17 - TSS region transcription start site region 26888
Tssr26889 2 153225396 to 153225442 46 - TSS region transcription start site region 26889
Plagl2 2 153227769 to 153241358 13589 - protein coding gene pleiomorphic adenoma gene-like 2
Tssr26890 2 153231139 to 153231156 17 - TSS region transcription start site region 26890
Tssr26891 2 153231654 to 153231687 33 - TSS region transcription start site region 26891
Tssr26892 2 153231710 to 153231728 18 - TSS region transcription start site region 26892
Tssr26893 2 153232117 to 153232129 12 - TSS region transcription start site region 26893
Tssr20879 2 153232541 to 153232572 31 + TSS region transcription start site region 20879
Tssr26894 2 153237917 to 153237934 17 - TSS region transcription start site region 26894
Cpgi12482 2 153240827 to 153241892 1065 CpG island CpG island 12482
Tssr20880 2 153240915 to 153240926 11 + TSS region transcription start site region 20880
Tssr20881 2 153240929 to 153240943 14 + TSS region transcription start site region 20881
Tssr26895 2 153241343 to 153241354 11 - TSS region transcription start site region 26895
Tssr26896 2 153241358 to 153241394 36 - TSS region transcription start site region 26896
Tssr26897 2 153241402 to 153241411 9 - TSS region transcription start site region 26897
Tssr20882 2 153241452 to 153241466 14 + TSS region transcription start site region 20882
Tssr26898 2 153241497 to 153241500 3 - TSS region transcription start site region 26898
Tssr20883 2 153241502 to 153241603 101 + TSS region transcription start site region 20883
Pofut1 2 153241533 to 153270247 28714 + protein coding gene protein O-fucosyltransferase 1
Tssr20884 2 153241607 to 153241618 11 + TSS region transcription start site region 20884
Tssr26899 2 153241709 to 153241724 15 - TSS region transcription start site region 26899
Tssr20885 2 153278657 to 153278695 38 + TSS region transcription start site region 20885
Tssr20886 2 153278720 to 153278725 5 + TSS region transcription start site region 20886
Tssr20887 2 153278859 to 153278870 11 + TSS region transcription start site region 20887
Gm39961 2 153283852 to 153291302 7450 - lncRNA gene predicted gene, 39961
Cpgi12483 2 153287452 to 153287622 170 CpG island CpG island 12483
Cpgi12484 2 153291058 to 153291833 775 CpG island CpG island 12484
Tssr20888 2 153291404 to 153291459 55 + TSS region transcription start site region 20888
Kif3b 2 153291413 to 153333390 41977 + protein coding gene kinesin family member 3B
Tssr20889 2 153308605 to 153308655 50 + TSS region transcription start site region 20889
Tssr20890 2 153336403 to 153336421 18 + TSS region transcription start site region 20890
2500004C02Rik 2 153341157 to 153345810 4653 - lncRNA gene RIKEN cDNA 2500004C02 gene
Cpgi12485 2 153345378 to 153346945 1567 CpG island CpG island 12485
Tssr697 2 153345502 to 153345506 4 + TSS region transcription start site region 697
Tssr26900 2 153345791 to 153345794 3 - TSS region transcription start site region 26900
Tssr20891 2 153345809 to 153345889 80 + TSS region transcription start site region 20891
Tssr20892 2 153345990 to 153346073 83 + TSS region transcription start site region 20892
Tssr26901 2 153346072 to 153346116 44 - TSS region transcription start site region 26901
Tssr20893 2 153346097 to 153346137 40 + TSS region transcription start site region 20893
Asxl1 2 153346139 to 153404007 57868 + protein coding gene additional sex combs like 1
Tssr20894 2 153346154 to 153346168 14 + TSS region transcription start site region 20894
Tssr20895 2 153346171 to 153346195 24 + TSS region transcription start site region 20895
Tssr26902 2 153346385 to 153346420 35 - TSS region transcription start site region 26902
Tssr20896 2 153346633 to 153346644 11 + TSS region transcription start site region 20896
Tssr20897 2 153347395 to 153347398 3 + TSS region transcription start site region 20897
Tssr20898 2 153354883 to 153354887 4 + TSS region transcription start site region 20898
Tssr20899 2 153357035 to 153357048 13 + TSS region transcription start site region 20899
Tssr20900 2 153368810 to 153368814 4 + TSS region transcription start site region 20900
Tssr20901 2 153376328 to 153376332 4 + TSS region transcription start site region 20901
D2Mit195 2 153390705 to 153390842 137 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 195
Nol4l 2 153407462 to 153529971 122509 - protein coding gene nucleolar protein 4-like
Tssr26903 2 153411421 to 153411429 8 - TSS region transcription start site region 26903
Tssr698 2 153413802 to 153413815 13 + TSS region transcription start site region 698
Gm14472 2 153413849 to 153414130 281 + pseudogene predicted gene 14472
Tssr699 2 153424693 to 153424704 11 - TSS region transcription start site region 699
Cpgi12486 2 153443426 to 153445862 2436 CpG island CpG island 12486
Tssr26904 2 153444389 to 153444407 18 - TSS region transcription start site region 26904
Tssr26905 2 153444417 to 153444440 23 - TSS region transcription start site region 26905
Tssr26906 2 153444441 to 153444492 51 - TSS region transcription start site region 26906
Tssr26907 2 153444586 to 153444615 29 - TSS region transcription start site region 26907
Cpgi12487 2 153491971 to 153493476 1505 CpG island CpG island 12487
Tssr26908 2 153492473 to 153492510 37 - TSS region transcription start site region 26908
Tssr26909 2 153492511 to 153492541 30 - TSS region transcription start site region 26909
Tssr26910 2 153492555 to 153492566 11 - TSS region transcription start site region 26910
4930404H24Rik 2 153492790 to 153493841 1051 + protein coding gene RIKEN cDNA 4930404H24 gene
Tssr26911 2 153505315 to 153505320 5 - TSS region transcription start site region 26911
Cpgi12488 2 153509302 to 153509467 165 CpG island CpG island 12488
D2Mit139 2 153526682 to 153526794 112 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 139
Cpgi12489 2 153527345 to 153530878 3533 CpG island CpG island 12489
Tssr700 2 153527965 to 153527979 14 + TSS region transcription start site region 700
Tssr26912 2 153529941 to 153529985 44 - TSS region transcription start site region 26912
Tssr26913 2 153530205 to 153530252 47 - TSS region transcription start site region 26913
Tssr701 2 153539688 to 153539690 2 + TSS region transcription start site region 701