Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:152576785-152797333

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80 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Defb19 2 152576086 to 152580312 4226 - protein coding gene defensin beta 19
Tssr26841 2 152580271 to 152580288 17 - TSS region transcription start site region 26841
Tssr26842 2 152580300 to 152580315 15 - TSS region transcription start site region 26842
Defb45 2 152593191 to 152596485 3294 - protein coding gene defensin beta 45
Tssr26843 2 152596436 to 152596454 18 - TSS region transcription start site region 26843
Tssr20806 2 152604324 to 152604350 26 + TSS region transcription start site region 20806
Defb36 2 152604327 to 152612729 8402 + protein coding gene defensin beta 36
Cpgi12452 2 152604339 to 152604644 305 CpG island CpG island 12452
Tssr20807 2 152604358 to 152604399 41 + TSS region transcription start site region 20807
Tssr20808 2 152604401 to 152604410 9 + TSS region transcription start site region 20808
Tssr20809 2 152604418 to 152604439 21 + TSS region transcription start site region 20809
Tssr20810 2 152604445 to 152604450 5 + TSS region transcription start site region 20810
Gm14163 2 152609174 to 152609390 216 + pseudogene predicted gene 14163
Gm31618 2 152611406 to 152613773 2367 - lncRNA gene predicted gene, 31618
Tssr26844 2 152622115 to 152622122 7 - TSS region transcription start site region 26844
Tssr26845 2 152622125 to 152622136 11 - TSS region transcription start site region 26845
Defb25 2 152622356 to 152623053 697 - protein coding gene defensin beta 25
Tssr26846 2 152623076 to 152623088 12 - TSS region transcription start site region 26846
Cpgi12453 2 152626613 to 152627577 964 CpG island CpG island 12453
Tssr20811 2 152626932 to 152626957 25 + TSS region transcription start site region 20811
Tssr20812 2 152626985 to 152627018 33 + TSS region transcription start site region 20812
Rem1 2 152627008 to 152635191 8183 + protein coding gene rad and gem related GTP binding protein 1
Tssr26847 2 152627266 to 152627281 15 - TSS region transcription start site region 26847
Tssr26848 2 152627330 to 152627339 9 - TSS region transcription start site region 26848
Cpgi12454 2 152633377 to 152633887 510 CpG island CpG island 12454
Cpgi12455 2 152634348 to 152634833 485 CpG island CpG island 12455
Gm31791 2 152645755 to 152649370 3615 + lncRNA gene predicted gene, 31791
D2Ertd691e 2 152650906 to 152651116 210 DNA segment DNA segment, Chr 2, ERATO Doi 691, expressed
1700030C14Rik 2 152652883 to 152654330 1447 - antisense lncRNA gene RIKEN cDNA 1700030C14 gene
Tssr26849 2 152654253 to 152654259 6 - TSS region transcription start site region 26849
Tssr26850 2 152654261 to 152654266 5 - TSS region transcription start site region 26850
Tssr26851 2 152654288 to 152654304 16 - TSS region transcription start site region 26851
Tssr26852 2 152654314 to 152654333 19 - TSS region transcription start site region 26852
Cpgi12456 2 152669232 to 152670325 1093 CpG island CpG island 12456
H13 2 152669461 to 152708670 39209 + protein coding gene histocompatibility 13
Tssr20813 2 152669462 to 152669539 77 + TSS region transcription start site region 20813
Tssr20814 2 152677571 to 152677594 23 + TSS region transcription start site region 20814
Tssr20815 2 152685288 to 152685297 9 + TSS region transcription start site region 20815
Tssr20816 2 152685312 to 152685323 11 + TSS region transcription start site region 20816
Tssr20817 2 152685330 to 152685335 5 + TSS region transcription start site region 20817
Tssr20818 2 152686115 to 152686130 15 + TSS region transcription start site region 20818
Cpgi12457 2 152686785 to 152687333 548 CpG island CpG island 12457
Tssr26853 2 152686805 to 152686815 10 - TSS region transcription start site region 26853
Tssr20819 2 152687021 to 152687041 20 + TSS region transcription start site region 20819
Tssr20820 2 152687137 to 152687158 21 + TSS region transcription start site region 20820
Mcts2 2 152687148 to 152687946 798 + protein coding gene malignant T cell amplified sequence 2
Tssr20821 2 152687163 to 152687177 14 + TSS region transcription start site region 20821
Tssr20822 2 152687178 to 152687200 22 + TSS region transcription start site region 20822
Gm26841 2 152694733 to 152696692 1959 - lincRNA gene predicted gene, 26841
Tssr20823 2 152694986 to 152695013 27 + TSS region transcription start site region 20823
Tssr20824 2 152695458 to 152695476 18 + TSS region transcription start site region 20824
Tssr20825 2 152695507 to 152695518 11 + TSS region transcription start site region 20825
Cpgi12458 2 152703803 to 152704198 395 CpG island CpG island 12458
Cpgi12459 2 152707452 to 152707942 490 CpG island CpG island 12459
Cpgi12460 2 152723838 to 152724454 616 CpG island CpG island 12460
Tssr26854 2 152728278 to 152728306 28 - TSS region transcription start site region 26854
Cpgi12461 2 152734883 to 152735347 464 CpG island CpG island 12461
Cpgi12462 2 152736172 to 152737163 991 CpG island CpG island 12462
Tssr20826 2 152736244 to 152736261 17 + TSS region transcription start site region 20826
Id1 2 152736251 to 152737410 1159 + protein coding gene inhibitor of DNA binding 1, HLH protein
Cpgi12463 2 152739379 to 152739702 323 CpG island CpG island 12463
Gm14162 2 152745707 to 152746307 600 + pseudogene predicted gene 14162
Gm32057 2 152749975 to 152757814 7839 - lncRNA gene predicted gene, 32057
Cpgi12464 2 152753999 to 152754486 487 CpG island CpG island 12464
Tssr20827 2 152754142 to 152754153 11 + TSS region transcription start site region 20827
Tssr20828 2 152754156 to 152754186 30 + TSS region transcription start site region 20828
Cox4i2 2 152754173 to 152765037 10864 + protein coding gene cytochrome c oxidase subunit 4I2
Tssr20829 2 152756761 to 152756790 29 + TSS region transcription start site region 20829
Tssr20830 2 152756996 to 152757005 9 + TSS region transcription start site region 20830
Tssr20831 2 152757058 to 152757071 13 + TSS region transcription start site region 20831
D2Wsu107e 2 152762960 to 152763209 249 DNA segment DNA segment, Chr 2, Wayne State University 107, expressed
Tssr26855 2 152765359 to 152765374 15 - TSS region transcription start site region 26855
Cpgi12465 2 152766462 to 152766829 367 CpG island CpG island 12465
Gm23802 2 152772788 to 152772889 101 - miRNA gene predicted gene, 23802
Tssr26856 2 152779039 to 152779058 19 - TSS region transcription start site region 26856
Bcl2l1 2 152780668 to 152831728 51060 - protein coding gene BCL2-like 1
Tssr26857 2 152781941 to 152781966 25 - TSS region transcription start site region 26857
Tssr26858 2 152787623 to 152787645 22 - TSS region transcription start site region 26858
Tssr20832 2 152787797 to 152787827 30 + TSS region transcription start site region 20832
Tssr26859 2 152792575 to 152792585 10 - TSS region transcription start site region 26859