Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:152562797-153012827

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157 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr20803 2 152562977 to 152562993 16 + TSS region transcription start site region 20803
Tssr20804 2 152563241 to 152563247 6 + TSS region transcription start site region 20804
Gm17416 2 152569338 to 152569538 200 + protein coding gene predicted gene, 17416
Defb21 2 152572744 to 152574944 2200 + protein coding gene defensin beta 21
Tssr20805 2 152573742 to 152573754 12 + TSS region transcription start site region 20805
Defb19 2 152576086 to 152580312 4226 - protein coding gene defensin beta 19
Tssr26841 2 152580271 to 152580288 17 - TSS region transcription start site region 26841
Tssr26842 2 152580300 to 152580315 15 - TSS region transcription start site region 26842
Defb45 2 152593191 to 152596485 3294 - protein coding gene defensin beta 45
Tssr26843 2 152596436 to 152596454 18 - TSS region transcription start site region 26843
Tssr20806 2 152604324 to 152604350 26 + TSS region transcription start site region 20806
Defb36 2 152604327 to 152612729 8402 + protein coding gene defensin beta 36
Cpgi12452 2 152604339 to 152604644 305 CpG island CpG island 12452
Tssr20807 2 152604358 to 152604399 41 + TSS region transcription start site region 20807
Tssr20808 2 152604401 to 152604410 9 + TSS region transcription start site region 20808
Tssr20809 2 152604418 to 152604439 21 + TSS region transcription start site region 20809
Tssr20810 2 152604445 to 152604450 5 + TSS region transcription start site region 20810
Gm14163 2 152609174 to 152609390 216 + pseudogene predicted gene 14163
Gm31618 2 152611406 to 152613773 2367 - lncRNA gene predicted gene, 31618
Tssr26844 2 152622115 to 152622122 7 - TSS region transcription start site region 26844
Tssr26845 2 152622125 to 152622136 11 - TSS region transcription start site region 26845
Defb25 2 152622356 to 152623053 697 - protein coding gene defensin beta 25
Tssr26846 2 152623076 to 152623088 12 - TSS region transcription start site region 26846
Cpgi12453 2 152626613 to 152627577 964 CpG island CpG island 12453
Tssr20811 2 152626932 to 152626957 25 + TSS region transcription start site region 20811
Tssr20812 2 152626985 to 152627018 33 + TSS region transcription start site region 20812
Rem1 2 152627008 to 152635191 8183 + protein coding gene rad and gem related GTP binding protein 1
Tssr26847 2 152627266 to 152627281 15 - TSS region transcription start site region 26847
Tssr26848 2 152627330 to 152627339 9 - TSS region transcription start site region 26848
Cpgi12454 2 152633377 to 152633887 510 CpG island CpG island 12454
Cpgi12455 2 152634348 to 152634833 485 CpG island CpG island 12455
Gm31791 2 152645755 to 152649370 3615 + lncRNA gene predicted gene, 31791
D2Ertd691e 2 152650906 to 152651116 210 DNA segment DNA segment, Chr 2, ERATO Doi 691, expressed
1700030C14Rik 2 152652883 to 152654330 1447 - antisense lncRNA gene RIKEN cDNA 1700030C14 gene
Tssr26849 2 152654253 to 152654259 6 - TSS region transcription start site region 26849
Tssr26850 2 152654261 to 152654266 5 - TSS region transcription start site region 26850
Tssr26851 2 152654288 to 152654304 16 - TSS region transcription start site region 26851
Tssr26852 2 152654314 to 152654333 19 - TSS region transcription start site region 26852
Cpgi12456 2 152669232 to 152670325 1093 CpG island CpG island 12456
H13 2 152669461 to 152708670 39209 + protein coding gene histocompatibility 13
Tssr20813 2 152669462 to 152669539 77 + TSS region transcription start site region 20813
Tssr20814 2 152677571 to 152677594 23 + TSS region transcription start site region 20814
Tssr20815 2 152685288 to 152685297 9 + TSS region transcription start site region 20815
Tssr20816 2 152685312 to 152685323 11 + TSS region transcription start site region 20816
Tssr20817 2 152685330 to 152685335 5 + TSS region transcription start site region 20817
Tssr20818 2 152686115 to 152686130 15 + TSS region transcription start site region 20818
Cpgi12457 2 152686785 to 152687333 548 CpG island CpG island 12457
Tssr26853 2 152686805 to 152686815 10 - TSS region transcription start site region 26853
Tssr20819 2 152687021 to 152687041 20 + TSS region transcription start site region 20819
Tssr20820 2 152687137 to 152687158 21 + TSS region transcription start site region 20820
Mcts2 2 152687148 to 152687946 798 + protein coding gene malignant T cell amplified sequence 2
Tssr20821 2 152687163 to 152687177 14 + TSS region transcription start site region 20821
Tssr20822 2 152687178 to 152687200 22 + TSS region transcription start site region 20822
Gm26841 2 152694733 to 152696692 1959 - lincRNA gene predicted gene, 26841
Tssr20823 2 152694986 to 152695013 27 + TSS region transcription start site region 20823
Tssr20824 2 152695458 to 152695476 18 + TSS region transcription start site region 20824
Tssr20825 2 152695507 to 152695518 11 + TSS region transcription start site region 20825
Cpgi12458 2 152703803 to 152704198 395 CpG island CpG island 12458
Cpgi12459 2 152707452 to 152707942 490 CpG island CpG island 12459
Cpgi12460 2 152723838 to 152724454 616 CpG island CpG island 12460
Tssr26854 2 152728278 to 152728306 28 - TSS region transcription start site region 26854
Cpgi12461 2 152734883 to 152735347 464 CpG island CpG island 12461
Cpgi12462 2 152736172 to 152737163 991 CpG island CpG island 12462
Tssr20826 2 152736244 to 152736261 17 + TSS region transcription start site region 20826
Id1 2 152736251 to 152737410 1159 + protein coding gene inhibitor of DNA binding 1, HLH protein
Cpgi12463 2 152739379 to 152739702 323 CpG island CpG island 12463
Gm14162 2 152745707 to 152746307 600 + pseudogene predicted gene 14162
Gm32057 2 152749975 to 152757814 7839 - lncRNA gene predicted gene, 32057
Cpgi12464 2 152753999 to 152754486 487 CpG island CpG island 12464
Tssr20827 2 152754142 to 152754153 11 + TSS region transcription start site region 20827
Tssr20828 2 152754156 to 152754186 30 + TSS region transcription start site region 20828
Cox4i2 2 152754173 to 152765037 10864 + protein coding gene cytochrome c oxidase subunit 4I2
Tssr20829 2 152756761 to 152756790 29 + TSS region transcription start site region 20829
Tssr20830 2 152756996 to 152757005 9 + TSS region transcription start site region 20830
Tssr20831 2 152757058 to 152757071 13 + TSS region transcription start site region 20831
D2Wsu107e 2 152762960 to 152763209 249 DNA segment DNA segment, Chr 2, Wayne State University 107, expressed
Tssr26855 2 152765359 to 152765374 15 - TSS region transcription start site region 26855
Cpgi12465 2 152766462 to 152766829 367 CpG island CpG island 12465
Gm23802 2 152772788 to 152772889 101 - miRNA gene predicted gene, 23802
Tssr26856 2 152779039 to 152779058 19 - TSS region transcription start site region 26856
Bcl2l1 2 152780668 to 152831728 51060 - protein coding gene BCL2-like 1
Tssr26857 2 152781941 to 152781966 25 - TSS region transcription start site region 26857
Tssr26858 2 152787623 to 152787645 22 - TSS region transcription start site region 26858
Tssr20832 2 152787797 to 152787827 30 + TSS region transcription start site region 20832
Tssr26859 2 152792575 to 152792585 10 - TSS region transcription start site region 26859
Gm32211 2 152802436 to 152803840 1404 + protein coding gene predicted gene, 32211
Tssr20833 2 152802459 to 152802463 4 + TSS region transcription start site region 20833
Tssr26860 2 152803206 to 152803215 9 - TSS region transcription start site region 26860
Tssr20834 2 152804830 to 152804837 7 + TSS region transcription start site region 20834
Tssr26861 2 152806075 to 152806100 25 - TSS region transcription start site region 26861
A630035D09Rik 2 152807539 to 152811875 4336 unclassified gene RIKEN cDNA A630035D09 gene
Tssr20835 2 152810468 to 152810472 4 + TSS region transcription start site region 20835
Tssr26862 2 152814970 to 152814975 5 - TSS region transcription start site region 26862
Tssr20836 2 152821268 to 152821282 14 + TSS region transcription start site region 20836
Tssr26863 2 152825754 to 152825762 8 - TSS region transcription start site region 26863
Tssr26864 2 152826173 to 152826181 8 - TSS region transcription start site region 26864
Tssr20837 2 152829458 to 152829475 17 + TSS region transcription start site region 20837
Cpgi12466 2 152829475 to 152829747 272 CpG island CpG island 12466
Tssr26865 2 152830218 to 152830256 38 - TSS region transcription start site region 26865
Tssr26866 2 152830266 to 152830279 13 - TSS region transcription start site region 26866
Tssr26867 2 152830410 to 152830417 7 - TSS region transcription start site region 26867
Tssr26868 2 152830480 to 152830495 15 - TSS region transcription start site region 26868
Cpgi12467 2 152830528 to 152831900 1372 CpG island CpG island 12467
Tssr26869 2 152830558 to 152830586 28 - TSS region transcription start site region 26869
Tssr20838 2 152830597 to 152830638 41 + TSS region transcription start site region 20838
Tssr26870 2 152830615 to 152830680 65 - TSS region transcription start site region 26870
Tssr26871 2 152830708 to 152830728 20 - TSS region transcription start site region 26871
Tssr20839 2 152830818 to 152830822 4 + TSS region transcription start site region 20839
Tssr26872 2 152831243 to 152831326 83 - TSS region transcription start site region 26872
Tssr26873 2 152831665 to 152831735 70 - TSS region transcription start site region 26873
Cpgi12468 2 152847836 to 152848339 503 CpG island CpG island 12468
Tssr20840 2 152847961 to 152847972 11 + TSS region transcription start site region 20840
Tpx2 2 152847964 to 152895321 47357 + protein coding gene TPX2, microtubule-associated
Tssr20841 2 152847993 to 152848076 83 + TSS region transcription start site region 20841
D2Dcr107 2 152857288 to 152857446 158 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 107
Bwq9 2 152857301 to 152857441 140 QTL body weight QTL 9
Chlq13 2 152857301 to 152857441 140 QTL circulating hormone level QTL 13
Gnf5 2 152857301 to 152857441 140 QTL growth and fatness 5
Gnf3 2 152857301 to 169276004 16418703 QTL growth and fatness 3
Gnf2 2 152857301 to 162355165 9497864 QTL growth and fatness 2
Rends 2 152857301 to 152857441 140 QTL renal disease susceptibility
D2Mit285 2 152857301 to 152857441 140 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 285
Mir5622 2 152865067 to 152865126 59 + miRNA gene microRNA 5622
Tssr20842 2 152867242 to 152867264 22 + TSS region transcription start site region 20842
Tssr20843 2 152869452 to 152869461 9 + TSS region transcription start site region 20843
Tssr20844 2 152869542 to 152869553 11 + TSS region transcription start site region 20844
Tssr20845 2 152876545 to 152876582 37 + TSS region transcription start site region 20845
Tssr20846 2 152876594 to 152876608 14 + TSS region transcription start site region 20846
Tssr20847 2 152905007 to 152905010 3 + TSS region transcription start site region 20847
Tssr695 2 152907855 to 152907859 4 + TSS region transcription start site region 695
Tssr20848 2 152911311 to 152911366 55 + TSS region transcription start site region 20848
Mylk2 2 152911352 to 152923068 11716 + protein coding gene myosin, light polypeptide kinase 2, skeletal muscle
Tssr20849 2 152911376 to 152911377 1 + TSS region transcription start site region 20849
Tssr20850 2 152911385 to 152911396 11 + TSS region transcription start site region 20850
Tssr696 2 152911646 to 152911681 35 + TSS region transcription start site region 696
Tssr20851 2 152911763 to 152911769 6 + TSS region transcription start site region 20851
Foxs1 2 152931898 to 152933208 1310 - protein coding gene forkhead box S1
Tssr20852 2 152931938 to 152931945 7 + TSS region transcription start site region 20852
Cpgi12469 2 152932419 to 152933053 634 CpG island CpG island 12469
Tssr26874 2 152933165 to 152933189 24 - TSS region transcription start site region 26874
Tssr26875 2 152933202 to 152933218 16 - TSS region transcription start site region 26875
Dusp15 2 152940997 to 152951698 10701 - protein coding gene dual specificity phosphatase-like 15
Cpgi12470 2 152942645 to 152943822 1177 CpG island CpG island 12470
Cpgi12471 2 152951178 to 152952126 948 CpG island CpG island 12471
Tssr26876 2 152951527 to 152951540 13 - TSS region transcription start site region 26876
Tssr26877 2 152951547 to 152951608 61 - TSS region transcription start site region 26877
Tssr26878 2 152951662 to 152951675 13 - TSS region transcription start site region 26878
Tssr26879 2 152951688 to 152951700 12 - TSS region transcription start site region 26879
Cpgi12472 2 152962282 to 152962884 602 CpG island CpG island 12472
Tssr20853 2 152962457 to 152962469 12 + TSS region transcription start site region 20853
Ttll9 2 152962485 to 153008482 45997 + protein coding gene tubulin tyrosine ligase-like family, member 9
Tssr20854 2 152962486 to 152962510 24 + TSS region transcription start site region 20854
Tssr20855 2 152962521 to 152962528 7 + TSS region transcription start site region 20855
Tssr20856 2 152967935 to 152967952 17 + TSS region transcription start site region 20856
Tssr20857 2 152988629 to 152988632 3 + TSS region transcription start site region 20857
Gm14199 2 152990017 to 152991631 1614 - antisense lncRNA gene predicted gene 14199
Pdrg1 2 153008890 to 153015383 6493 - protein coding gene p53 and DNA damage regulated 1