Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:152411793-152611800

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72 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Zcchc3 2 152411955 to 152415027 3072 - protein coding gene zinc finger, CCHC domain containing 3
Tssr26818 2 152412920 to 152412925 5 - TSS region transcription start site region 26818
Tssr26819 2 152413268 to 152413311 43 - TSS region transcription start site region 26819
Tssr26820 2 152413486 to 152413489 3 - TSS region transcription start site region 26820
Cpgi12450 2 152413577 to 152415176 1599 CpG island CpG island 12450
Tssr20791 2 152413685 to 152413698 13 + TSS region transcription start site region 20791
Tssr26821 2 152414739 to 152414755 16 - TSS region transcription start site region 26821
Tssr26822 2 152414772 to 152414809 37 - TSS region transcription start site region 26822
Tssr26823 2 152414818 to 152414834 16 - TSS region transcription start site region 26823
Tssr26824 2 152414839 to 152414861 22 - TSS region transcription start site region 26824
6820408C15Rik 2 152415587 to 152444330 28743 + protein coding gene RIKEN cDNA 6820408C15 gene
Gm27343 2 152417262 to 152417324 62 + snRNA gene predicted gene, 27343
Tssr20792 2 152427612 to 152427638 26 + TSS region transcription start site region 20792
Tssr20793 2 152427639 to 152427699 60 + TSS region transcription start site region 20793
D2Dcr106 2 152436164 to 152436273 109 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 106
D2Mit309 2 152436191 to 152436309 118 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 309
Cpgi12451 2 152437401 to 152437865 464 CpG island CpG island 12451
Gm39960 2 152447948 to 152450049 2101 + lncRNA gene predicted gene, 39960
Gm14158 2 152457771 to 152458078 307 + pseudogene predicted gene 14158
Defb23 2 152459055 to 152464620 5565 - protein coding gene defensin beta 23
Tssr20794 2 152459394 to 152459433 39 + TSS region transcription start site region 20794
Tssr26825 2 152464604 to 152464608 4 - TSS region transcription start site region 26825
Tssr26826 2 152464612 to 152464640 28 - TSS region transcription start site region 26826
Gm14156 2 152467394 to 152467876 482 + pseudogene predicted gene 14156
Tssr20795 2 152477003 to 152477006 3 + TSS region transcription start site region 20795
Tssr20796 2 152477017 to 152477020 3 + TSS region transcription start site region 20796
Tssr20797 2 152477032 to 152477038 6 + TSS region transcription start site region 20797
Tssr20798 2 152477039 to 152477045 6 + TSS region transcription start site region 20798
Tssr20799 2 152477050 to 152477073 23 + TSS region transcription start site region 20799
Defb20 2 152477063 to 152479934 2871 + protein coding gene defensin beta 20
Tssr20800 2 152477077 to 152477085 8 + TSS region transcription start site region 20800
Tssr20801 2 152477100 to 152477105 5 + TSS region transcription start site region 20801
Defb22 2 152485666 to 152490138 4472 - protein coding gene defensin beta 22
Tssr26827 2 152490127 to 152490146 19 - TSS region transcription start site region 26827
Tssr26828 2 152490149 to 152490180 31 - TSS region transcription start site region 26828
Tssr26829 2 152490185 to 152490190 5 - TSS region transcription start site region 26829
Tssr26830 2 152490196 to 152490199 3 - TSS region transcription start site region 26830
Tssr26831 2 152490200 to 152490212 12 - TSS region transcription start site region 26831
Defb26 2 152507798 to 152511692 3894 - protein coding gene defensin beta 26
Tssr26832 2 152511706 to 152511718 12 - TSS region transcription start site region 26832
Tssr26833 2 152511731 to 152511748 17 - TSS region transcription start site region 26833
Tssr26834 2 152511776 to 152511791 15 - TSS region transcription start site region 26834
Tssr26835 2 152511793 to 152511800 7 - TSS region transcription start site region 26835
Tssr694 2 152518236 to 152518243 7 + TSS region transcription start site region 694
Tssr20802 2 152518247 to 152518269 22 + TSS region transcription start site region 20802
Defb28 2 152518255 to 152521447 3192 + protein coding gene defensin beta 28
Defb29 2 152538714 to 152540041 1327 - protein coding gene defensin beta 29
Tssr26836 2 152540016 to 152540031 15 - TSS region transcription start site region 26836
Tssr26837 2 152540035 to 152540073 38 - TSS region transcription start site region 26837
Tssr26838 2 152540094 to 152540101 7 - TSS region transcription start site region 26838
Tssr26839 2 152540103 to 152540114 11 - TSS region transcription start site region 26839
Tssr26840 2 152540255 to 152540258 3 - TSS region transcription start site region 26840
Gm14161 2 152549714 to 152553932 4218 - antisense lncRNA gene predicted gene 14161
Tssr20803 2 152562977 to 152562993 16 + TSS region transcription start site region 20803
Tssr20804 2 152563241 to 152563247 6 + TSS region transcription start site region 20804
Gm17416 2 152569338 to 152569538 200 + protein coding gene predicted gene, 17416
Defb21 2 152572744 to 152574944 2200 + protein coding gene defensin beta 21
Tssr20805 2 152573742 to 152573754 12 + TSS region transcription start site region 20805
Defb19 2 152576086 to 152580312 4226 - protein coding gene defensin beta 19
Tssr26841 2 152580271 to 152580288 17 - TSS region transcription start site region 26841
Tssr26842 2 152580300 to 152580315 15 - TSS region transcription start site region 26842
Defb45 2 152593191 to 152596485 3294 - protein coding gene defensin beta 45
Tssr26843 2 152596436 to 152596454 18 - TSS region transcription start site region 26843
Tssr20806 2 152604324 to 152604350 26 + TSS region transcription start site region 20806
Defb36 2 152604327 to 152612729 8402 + protein coding gene defensin beta 36
Cpgi12452 2 152604339 to 152604644 305 CpG island CpG island 12452
Tssr20807 2 152604358 to 152604399 41 + TSS region transcription start site region 20807
Tssr20808 2 152604401 to 152604410 9 + TSS region transcription start site region 20808
Tssr20809 2 152604418 to 152604439 21 + TSS region transcription start site region 20809
Tssr20810 2 152604445 to 152604450 5 + TSS region transcription start site region 20810
Gm14163 2 152609174 to 152609390 216 + pseudogene predicted gene 14163
Gm31618 2 152611406 to 152613773 2367 - lncRNA gene predicted gene, 31618