Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:152000087-152350125

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93 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Slc52a3 2 151996511 to 152009258 12747 + protein coding gene solute carrier protein family 52, member 3
D2Mit1005 2 152027493 to 152027629 136 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 1005
Cpgi12432 2 152029299 to 152030006 707 CpG island CpG island 12432
Cpgi12433 2 152048132 to 152049414 1282 CpG island CpG island 12433
D2Mit140 2 152069555 to 152069658 103 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 140
AA387200 2 152074855 to 152076808 1953 - antisense lncRNA gene expressed sequence AA387200
Tssr20749 2 152080819 to 152080830 11 + TSS region transcription start site region 20749
Cpgi12434 2 152080822 to 152081003 181 CpG island CpG island 12434
Tssr20750 2 152080863 to 152080874 11 + TSS region transcription start site region 20750
Tssr20751 2 152080898 to 152080906 8 + TSS region transcription start site region 20751
Tssr20752 2 152080914 to 152080939 25 + TSS region transcription start site region 20752
Tssr20753 2 152080943 to 152080954 11 + TSS region transcription start site region 20753
Tssr20754 2 152080965 to 152080975 10 + TSS region transcription start site region 20754
Tssr20755 2 152081108 to 152081137 29 + TSS region transcription start site region 20755
Tssr20756 2 152081232 to 152081252 20 + TSS region transcription start site region 20756
Tssr20757 2 152081374 to 152081390 16 + TSS region transcription start site region 20757
Cpgi12435 2 152081505 to 152082671 1166 CpG island CpG island 12435
Scrt2 2 152081529 to 152095802 14273 + protein coding gene scratch family zinc finger 2
Tssr20758 2 152081602 to 152081624 22 + TSS region transcription start site region 20758
Tssr20759 2 152081632 to 152081643 11 + TSS region transcription start site region 20759
Tssr20760 2 152081810 to 152081825 15 + TSS region transcription start site region 20760
Tssr20761 2 152081868 to 152081893 25 + TSS region transcription start site region 20761
Cpgi12436 2 152092741 to 152094310 1569 CpG island CpG island 12436
Tssr20762 2 152093456 to 152093475 19 + TSS region transcription start site region 20762
Tssr20763 2 152093488 to 152093498 10 + TSS region transcription start site region 20763
Tssr20764 2 152093727 to 152093734 7 + TSS region transcription start site region 20764
Tssr20765 2 152093944 to 152093958 14 + TSS region transcription start site region 20765
Tssr20766 2 152095086 to 152095100 14 + TSS region transcription start site region 20766
Cpgi12437 2 152095170 to 152095452 282 CpG island CpG island 12437
Gm31475 2 152101487 to 152103352 1865 - lncRNA gene predicted gene, 31475
9230118N01Rik 2 152104682 to 152105208 526 unclassified gene RIKEN cDNA 9230118N01 gene
Tssr20767 2 152104802 to 152104818 16 + TSS region transcription start site region 20767
Tssr20768 2 152104914 to 152104935 21 + TSS region transcription start site region 20768
Cpgi12438 2 152105008 to 152106168 1160 CpG island CpG island 12438
Tssr26780 2 152105367 to 152105387 20 - TSS region transcription start site region 26780
Srxn1 2 152105524 to 152111376 5852 + protein coding gene sulfiredoxin 1 homolog (S. cerevisiae)
Tssr20769 2 152105722 to 152105739 17 + TSS region transcription start site region 20769
Tssr26781 2 152106040 to 152106056 16 - TSS region transcription start site region 26781
Tssr20770 2 152106256 to 152106262 6 + TSS region transcription start site region 20770
Tssr20771 2 152108013 to 152108022 9 + TSS region transcription start site region 20771
Tssr20772 2 152109063 to 152109079 16 + TSS region transcription start site region 20772
Tssr26782 2 152109233 to 152109305 72 - TSS region transcription start site region 26782
Tssr20773 2 152109369 to 152109381 12 + TSS region transcription start site region 20773
Tssr20774 2 152110831 to 152110838 7 + TSS region transcription start site region 20774
Cpgi12439 2 152114631 to 152115031 400 CpG island CpG island 12439
Gm31535 2 152139827 to 152142750 2923 + lncRNA gene predicted gene, 31535
Cpgi12440 2 152142902 to 152144430 1528 CpG island CpG island 12440
Tssr20775 2 152143552 to 152143558 6 + TSS region transcription start site region 20775
Tcf15 2 152143561 to 152149097 5536 + protein coding gene transcription factor 15
Tssr20776 2 152160135 to 152160136 1 + TSS region transcription start site region 20776
Tssr20777 2 152175087 to 152175125 38 + TSS region transcription start site region 20777
Tssr20778 2 152177727 to 152177739 12 + TSS region transcription start site region 20778
Tssr20779 2 152179538 to 152179549 11 + TSS region transcription start site region 20779
Rps15a-ps7 2 152185291 to 152185682 391 - pseudogene ribosomal protein S15A, pseudogene 7
Tssr26783 2 152185703 to 152185714 11 - TSS region transcription start site region 26783
Cpgi12441 2 152226369 to 152227583 1214 CpG island CpG island 12441
Tssr20780 2 152226540 to 152226574 34 + TSS region transcription start site region 20780
Tssr26784 2 152226721 to 152226753 32 - TSS region transcription start site region 26784
Tssr20781 2 152226808 to 152226839 31 + TSS region transcription start site region 20781
Csnk2a1 2 152226839 to 152281852 55013 + protein coding gene casein kinase 2, alpha 1 polypeptide
Tssr26785 2 152227231 to 152227264 33 - TSS region transcription start site region 26785
Tssr20782 2 152236734 to 152236738 4 + TSS region transcription start site region 20782
Tssr20783 2 152243342 to 152243343 1 + TSS region transcription start site region 20783
Tssr20784 2 152274080 to 152274086 6 + TSS region transcription start site region 20784
Cpgi12442 2 152293385 to 152294368 983 CpG island CpG island 12442
Tssr20785 2 152293831 to 152293861 30 + TSS region transcription start site region 20785
Tbc1d20 2 152293833 to 152313994 20161 + protein coding gene TBC1 domain family, member 20
Tssr20786 2 152293863 to 152293884 21 + TSS region transcription start site region 20786
Tssr20787 2 152293979 to 152294002 23 + TSS region transcription start site region 20787
Rbck1 2 152316334 to 152332643 16309 - protein coding gene RanBP-type and C3HC4-type zinc finger containing 1
Cpgi12443 2 152331908 to 152332942 1034 CpG island CpG island 12443
Tssr26786 2 152332199 to 152332213 14 - TSS region transcription start site region 26786
Tssr26787 2 152332227 to 152332236 9 - TSS region transcription start site region 26787
Tssr26788 2 152332287 to 152332298 11 - TSS region transcription start site region 26788
Tssr26789 2 152332301 to 152332312 11 - TSS region transcription start site region 26789
Tssr26790 2 152332353 to 152332422 69 - TSS region transcription start site region 26790
Tssr26791 2 152332431 to 152332447 16 - TSS region transcription start site region 26791
Tssr26792 2 152332558 to 152332569 11 - TSS region transcription start site region 26792
Tssr26793 2 152332639 to 152332678 39 - TSS region transcription start site region 26793
Tssr20788 2 152333873 to 152333876 3 + TSS region transcription start site region 20788
Trib3 2 152337422 to 152344032 6610 - protein coding gene tribbles pseudokinase 3
Cpgi12444 2 152339730 to 152339903 173 CpG island CpG island 12444
Cpgi12445 2 152343686 to 152344336 650 CpG island CpG island 12445
Tssr26794 2 152343909 to 152343922 13 - TSS region transcription start site region 26794
Tssr26795 2 152343942 to 152343951 9 - TSS region transcription start site region 26795
Tssr26796 2 152343964 to 152343971 7 - TSS region transcription start site region 26796
Tssr26797 2 152343982 to 152344007 25 - TSS region transcription start site region 26797
Tssr26798 2 152344009 to 152344033 24 - TSS region transcription start site region 26798
Tssr26799 2 152344043 to 152344068 25 - TSS region transcription start site region 26799
Tssr26800 2 152344076 to 152344085 9 - TSS region transcription start site region 26800
Tssr20789 2 152345626 to 152345637 11 + TSS region transcription start site region 20789
Gm14164 2 152345669 to 152375322 29653 + lncRNA gene predicted gene 14164
Tssr26801 2 152349922 to 152349942 20 - TSS region transcription start site region 26801