Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:151497578-151999978

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117 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nsfl1c 2 151494182 to 151511310 17128 + protein coding gene NSFL1 (p97) cofactor (p47)
Gm14167 2 151540731 to 151542348 1617 - antisense lncRNA gene predicted gene 14167
Tssr20722 2 151540775 to 151540782 7 + TSS region transcription start site region 20722
Tssr20723 2 151540793 to 151540798 5 + TSS region transcription start site region 20723
Cpgi12419 2 151542162 to 151543366 1204 CpG island CpG island 12419
Tssr26737 2 151542342 to 151542354 12 - TSS region transcription start site region 26737
Tssr26738 2 151542394 to 151542487 93 - TSS region transcription start site region 26738
Tssr20724 2 151542479 to 151542503 24 + TSS region transcription start site region 20724
Fkbp1a 2 151542483 to 151561691 19208 + protein coding gene FK506 binding protein 1a
Tssr20725 2 151542507 to 151542515 8 + TSS region transcription start site region 20725
Tssr20726 2 151542555 to 151542646 91 + TSS region transcription start site region 20726
Tssr20727 2 151542659 to 151542670 11 + TSS region transcription start site region 20727
Tssr20728 2 151542692 to 151542695 3 + TSS region transcription start site region 20728
Tssr20729 2 151542819 to 151542823 4 + TSS region transcription start site region 20729
Tssr20730 2 151543669 to 151543711 42 + TSS region transcription start site region 20730
Tssr20731 2 151543877 to 151543891 14 + TSS region transcription start site region 20731
Tssr20732 2 151543956 to 151544009 53 + TSS region transcription start site region 20732
Tssr20733 2 151558809 to 151558813 4 + TSS region transcription start site region 20733
Tssr20734 2 151561138 to 151561156 18 + TSS region transcription start site region 20734
Tssr26739 2 151563612 to 151563619 7 - TSS region transcription start site region 26739
Gm39959 2 151568962 to 151572210 3248 - lncRNA gene predicted gene, 39959
Tssr20735 2 151572606 to 151572627 21 + TSS region transcription start site region 20735
Sdcbp2 2 151572622 to 151590005 17383 + protein coding gene syndecan binding protein (syntenin) 2
Tssr20736 2 151572628 to 151572673 45 + TSS region transcription start site region 20736
Cpgi12420 2 151575821 to 151576441 620 CpG island CpG island 12420
Snph 2 151590549 to 151632593 42044 - protein coding gene syntaphilin
D2Mit449 2 151623609 to 151623728 119 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 449
Cpgi12421 2 151631623 to 151632737 1114 CpG island CpG island 12421
Tssr26740 2 151632517 to 151632599 82 - TSS region transcription start site region 26740
Tssr26741 2 151632621 to 151632632 11 - TSS region transcription start site region 26741
Gm46786 2 151634879 to 151636501 1622 + lncRNA gene predicted gene, 46786
Gm19180 2 151642990 to 151643632 642 - pseudogene predicted gene, 19180
Tssr26742 2 151645192 to 151645195 3 - TSS region transcription start site region 26742
Rad21l 2 151645404 to 151668533 23129 - protein coding gene RAD21-like (S. pombe)
Cpgi12422 2 151670045 to 151670748 703 CpG island CpG island 12422
Tssr26743 2 151670578 to 151670613 35 - TSS region transcription start site region 26743
Tmem74bos 2 151679361 to 151686339 6978 - antisense lncRNA gene transmembrane 74B, opposite strand
D2Mit424 2 151694657 to 151694807 150 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 424
Gm14159 2 151699476 to 151699926 450 - pseudogene predicted gene 14159
Cpgi12423 2 151701814 to 151703247 1433 CpG island CpG island 12423
Tmem74b 2 151702008 to 151712157 10149 + protein coding gene transmembrane protein 74B
Tssr20737 2 151702182 to 151702213 31 + TSS region transcription start site region 20737
Psmf1 2 151716062 to 151744189 28127 - protein coding gene proteasome (prosome, macropain) inhibitor subunit 1
Tssr26744 2 151718662 to 151718684 22 - TSS region transcription start site region 26744
Tssr26745 2 151729564 to 151729578 14 - TSS region transcription start site region 26745
Tssr26746 2 151729927 to 151729966 39 - TSS region transcription start site region 26746
Cpgi12424 2 151740621 to 151741466 845 CpG island CpG island 12424
Tssr26747 2 151741156 to 151741170 14 - TSS region transcription start site region 26747
Tssr26748 2 151741172 to 151741177 5 - TSS region transcription start site region 26748
Tssr26749 2 151741208 to 151741218 10 - TSS region transcription start site region 26749
Tssr26750 2 151741222 to 151741226 4 - TSS region transcription start site region 26750
Tssr26751 2 151741236 to 151741309 73 - TSS region transcription start site region 26751
Tssr26752 2 151744142 to 151744205 63 - TSS region transcription start site region 26752
Tssr26753 2 151744206 to 151744211 5 - TSS region transcription start site region 26753
4930556L07Rik 2 151747578 to 151749978 2400 - lincRNA gene RIKEN cDNA 4930556L07 gene
Tssr26754 2 151751413 to 151751418 5 - TSS region transcription start site region 26754
Tssr26755 2 151751429 to 151751462 33 - TSS region transcription start site region 26755
Cpgi12425 2 151776026 to 151776325 299 CpG island CpG island 12425
Gm14153 2 151797110 to 151798248 1138 - pseudogene predicted gene 14153
Hylaq2 2 151799021 to 164277226 12478205 QTL Hyperlocomotor activity related QTL 2
Tailq2 2 151799021 to 162895154 11096133 QTL tail length QTL 2
D2Mit22 2 151799021 to 151799209 188 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 22
Epfq1 2 151799021 to 162895154 11096133 QTL epididymal fat pad weight QTL 1
Scfq1 2 151799021 to 162895154 11096133 QTL subcutaneous fat pad weight QTL 1
Tssr20738 2 151827440 to 151827441 1 + TSS region transcription start site region 20738
Gm14155 2 151829067 to 151832108 3041 + lincRNA gene predicted gene 14155
Cpgi12426 2 151842499 to 151843353 854 CpG island CpG island 12426
Tssr20739 2 151842912 to 151842934 22 + TSS region transcription start site region 20739
Rspo4 2 151842927 to 151874668 31741 + protein coding gene R-spondin 4
Rspo4os 2 151865315 to 151866960 1645 - antisense lncRNA gene R-spondin 4, opposite strand
Scgq3 2 151867353 to 174547331 22679978 QTL spontaneous crescentic glomerulonephritis QTL 3
D2Mit26 2 151867353 to 151867538 185 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 26
Tssr20740 2 151911204 to 151911212 8 + TSS region transcription start site region 20740
Angpt4 2 151911332 to 151944654 33322 + protein coding gene angiopoietin 4
Gm14154 2 151947273 to 151950641 3368 - antisense lncRNA gene predicted gene 14154
Tssr26756 2 151959358 to 151959392 34 - TSS region transcription start site region 26756
Tssr26757 2 151961913 to 151961937 24 - TSS region transcription start site region 26757
Tssr20741 2 151962771 to 151962796 25 + TSS region transcription start site region 20741
Mir1953 2 151967529 to 151967617 88 - miRNA gene microRNA 1953
Fam110a 2 151969398 to 151980219 10821 - protein coding gene family with sequence similarity 110, member A
Cpgi12427 2 151969993 to 151971040 1047 CpG island CpG island 12427
Tssr20742 2 151970027 to 151970029 2 + TSS region transcription start site region 20742
Tssr26758 2 151970801 to 151970829 28 - TSS region transcription start site region 26758
Tssr26759 2 151970956 to 151970977 21 - TSS region transcription start site region 26759
Tssr26760 2 151972875 to 151972895 20 - TSS region transcription start site region 26760
Tssr26761 2 151972949 to 151972958 9 - TSS region transcription start site region 26761
Tssr26762 2 151972960 to 151972974 14 - TSS region transcription start site region 26762
Tssr26763 2 151973037 to 151973043 6 - TSS region transcription start site region 26763
Cpgi12428 2 151973257 to 151974225 968 CpG island CpG island 12428
Tssr26764 2 151973271 to 151973281 10 - TSS region transcription start site region 26764
Tssr26765 2 151973309 to 151973316 7 - TSS region transcription start site region 26765
Tssr26766 2 151973354 to 151973372 18 - TSS region transcription start site region 26766
Tssr26767 2 151973387 to 151973399 12 - TSS region transcription start site region 26767
Tssr26768 2 151973400 to 151973423 23 - TSS region transcription start site region 26768
Tssr20743 2 151973412 to 151973425 13 + TSS region transcription start site region 20743
Tssr26769 2 151973438 to 151973453 15 - TSS region transcription start site region 26769
Tssr26770 2 151973458 to 151973472 14 - TSS region transcription start site region 26770
Tssr20744 2 151973461 to 151973468 7 + TSS region transcription start site region 20744
Tssr26771 2 151973811 to 151973822 11 - TSS region transcription start site region 26771
Tssr26772 2 151973840 to 151973858 18 - TSS region transcription start site region 26772
Tssr26773 2 151974078 to 151974101 23 - TSS region transcription start site region 26773
Tssr26774 2 151974149 to 151974168 19 - TSS region transcription start site region 26774
Tssr26775 2 151974188 to 151974199 11 - TSS region transcription start site region 26775
Tssr26776 2 151974203 to 151974217 14 - TSS region transcription start site region 26776
Tssr692 2 151974228 to 151974235 7 - TSS region transcription start site region 692
Tssr20745 2 151978383 to 151978400 17 + TSS region transcription start site region 20745
Cpgi12429 2 151979768 to 151980432 664 CpG island CpG island 12429
Tssr693 2 151980073 to 151980092 19 - TSS region transcription start site region 693
Tssr26777 2 151980097 to 151980130 33 - TSS region transcription start site region 26777
Tssr26778 2 151980135 to 151980182 47 - TSS region transcription start site region 26778
Tssr26779 2 151980193 to 151980223 30 - TSS region transcription start site region 26779
Cpgi12430 2 151994857 to 151995117 260 CpG island CpG island 12430
Cpgi12431 2 151996388 to 151996639 251 CpG island CpG island 12431
Tssr20746 2 151996505 to 151996556 51 + TSS region transcription start site region 20746
Slc52a3 2 151996511 to 152009258 12747 + protein coding gene solute carrier protein family 52, member 3
Tssr20747 2 151999874 to 151999885 11 + TSS region transcription start site region 20747
Tssr20748 2 151999886 to 151999901 15 + TSS region transcription start site region 20748