Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:150977039-151641003

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77 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ninl 2 150934519 to 151009398 74879 - protein coding gene ninein-like
Gm14141 2 150992182 to 150992964 782 + pseudogene predicted gene 14141
Cpgi12416 2 151008576 to 151009525 949 CpG island CpG island 12416
Tssr26732 2 151009340 to 151009356 16 - TSS region transcription start site region 26732
Tssr26733 2 151009364 to 151009390 26 - TSS region transcription start site region 26733
Nanp 2 151029685 to 151039379 9694 - protein coding gene N-acetylneuraminic acid phosphatase
Cpgi12417 2 151038849 to 151039876 1027 CpG island CpG island 12417
A130094D17Rik 2 151038983 to 151040993 2010 unclassified non-coding RNA gene RIKEN cDNA A130094D17 gene
Tssr26734 2 151039363 to 151039403 40 - TSS region transcription start site region 26734
Tssr20713 2 151039501 to 151039517 16 + TSS region transcription start site region 20713
Gm22187 2 151059955 to 151060083 128 + snoRNA gene predicted gene, 22187
Gm24199 2 151073655 to 151073790 135 - snoRNA gene predicted gene, 24199
Gm14151 2 151086786 to 151092350 5564 - protein coding gene predicted gene 14151
Gm14147 2 151098245 to 151103818 5573 + protein coding gene predicted gene 14147
Gm14145 2 151104892 to 151106326 1434 + lincRNA gene predicted gene 14145
Gm22517 2 151123853 to 151123988 135 + snoRNA gene predicted gene, 22517
Gm30478 2 151127076 to 151143423 16347 + lncRNA gene predicted gene, 30478
Tssr20714 2 151127459 to 151127474 15 + TSS region transcription start site region 20714
Tssr20715 2 151127480 to 151127486 6 + TSS region transcription start site region 20715
Gm14149 2 151205195 to 151231614 26419 + lincRNA gene predicted gene 14149
Gm19264 2 151231899 to 151233504 1605 + pseudogene predicted gene, 19264
Gm14144 2 151264603 to 151278836 14233 - lincRNA gene predicted gene 14144
Gm23005 2 151282975 to 151283110 135 - snoRNA gene predicted gene, 23005
Gm24077 2 151300944 to 151301079 135 + snoRNA gene predicted gene, 24077
Tssr690 2 151302012 to 151302035 23 + TSS region transcription start site region 690
4930442J19Rik 2 151302039 to 151316003 13964 + lincRNA gene RIKEN cDNA 4930442J19 gene
4930488B04Rik 2 151332281 to 151332579 298 unclassified gene RIKEN cDNA 4930488B04 gene
Gm19306 2 151360756 to 151363135 2379 - pseudogene predicted gene, 19306
Gm23261 2 151372363 to 151372498 135 - snoRNA gene predicted gene, 23261
Tssr20716 2 151373932 to 151373941 9 + TSS region transcription start site region 20716
Gm14148 2 151374008 to 151375047 1039 + pseudogene predicted gene 14148
Gm14152 2 151380650 to 151432402 51752 - lincRNA gene predicted gene 14152
Gm46727 2 151390157 to 151391788 1631 + pseudogene predicted gene, 46727
Tssr26735 2 151432375 to 151432380 5 - TSS region transcription start site region 26735
Tssr26736 2 151432392 to 151432403 11 - TSS region transcription start site region 26736
Gm24868 2 151435794 to 151435929 135 - snoRNA gene predicted gene, 24868
Tssr20717 2 151458855 to 151458857 2 + TSS region transcription start site region 20717
Gm14150 2 151458956 to 151460309 1353 + pseudogene predicted gene 14150
Tssr691 2 151459147 to 151459167 20 + TSS region transcription start site region 691
Gm14146 2 151462045 to 151469613 7568 - antisense lncRNA gene predicted gene 14146
4921509C19Rik 2 151470542 to 151476153 5611 - protein coding gene RIKEN cDNA 4921509C19 gene
Tssr20718 2 151485981 to 151485984 3 + TSS region transcription start site region 20718
Tssr20719 2 151488601 to 151488606 5 + TSS region transcription start site region 20719
Cpgi12418 2 151494086 to 151494756 670 CpG island CpG island 12418
Nsfl1c 2 151494182 to 151511310 17128 + protein coding gene NSFL1 (p97) cofactor (p47)
Tssr20720 2 151494183 to 151494203 20 + TSS region transcription start site region 20720
Tssr20721 2 151494274 to 151494304 30 + TSS region transcription start site region 20721
Gm14167 2 151540731 to 151542348 1617 - antisense lncRNA gene predicted gene 14167
Tssr20722 2 151540775 to 151540782 7 + TSS region transcription start site region 20722
Tssr20723 2 151540793 to 151540798 5 + TSS region transcription start site region 20723
Cpgi12419 2 151542162 to 151543366 1204 CpG island CpG island 12419
Tssr26737 2 151542342 to 151542354 12 - TSS region transcription start site region 26737
Tssr26738 2 151542394 to 151542487 93 - TSS region transcription start site region 26738
Tssr20724 2 151542479 to 151542503 24 + TSS region transcription start site region 20724
Fkbp1a 2 151542483 to 151561691 19208 + protein coding gene FK506 binding protein 1a
Tssr20725 2 151542507 to 151542515 8 + TSS region transcription start site region 20725
Tssr20726 2 151542555 to 151542646 91 + TSS region transcription start site region 20726
Tssr20727 2 151542659 to 151542670 11 + TSS region transcription start site region 20727
Tssr20728 2 151542692 to 151542695 3 + TSS region transcription start site region 20728
Tssr20729 2 151542819 to 151542823 4 + TSS region transcription start site region 20729
Tssr20730 2 151543669 to 151543711 42 + TSS region transcription start site region 20730
Tssr20731 2 151543877 to 151543891 14 + TSS region transcription start site region 20731
Tssr20732 2 151543956 to 151544009 53 + TSS region transcription start site region 20732
Tssr20733 2 151558809 to 151558813 4 + TSS region transcription start site region 20733
Tssr20734 2 151561138 to 151561156 18 + TSS region transcription start site region 20734
Tssr26739 2 151563612 to 151563619 7 - TSS region transcription start site region 26739
Gm39959 2 151568962 to 151572210 3248 - lncRNA gene predicted gene, 39959
Tssr20735 2 151572606 to 151572627 21 + TSS region transcription start site region 20735
Sdcbp2 2 151572622 to 151590005 17383 + protein coding gene syndecan binding protein (syntenin) 2
Tssr20736 2 151572628 to 151572673 45 + TSS region transcription start site region 20736
Cpgi12420 2 151575821 to 151576441 620 CpG island CpG island 12420
Snph 2 151590549 to 151632593 42044 - protein coding gene syntaphilin
D2Mit449 2 151623609 to 151623728 119 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 449
Cpgi12421 2 151631623 to 151632737 1114 CpG island CpG island 12421
Tssr26740 2 151632517 to 151632599 82 - TSS region transcription start site region 26740
Tssr26741 2 151632621 to 151632632 11 - TSS region transcription start site region 26741
Gm46786 2 151634879 to 151636501 1622 + lncRNA gene predicted gene, 46786