Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:150626075-154986100

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968 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cplaq15 2 111085773 to 154512747 43426974 QTL circadian period of locomotor activity 15
Acss1 2 150618111 to 150668240 50129 - protein coding gene acyl-CoA synthetase short-chain family member 1
Tssr26711 2 150638095 to 150638107 12 - TSS region transcription start site region 26711
D2Dcr105 2 150641786 to 150641881 95 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 105
Tssr20706 2 150667385 to 150667421 36 + TSS region transcription start site region 20706
E130215H24Rik 2 150667494 to 150668932 1438 + lncRNA gene RIKEN cDNA E130215H24 gene
Cpgi12409 2 150667685 to 150668575 890 CpG island CpG island 12409
Tssr26712 2 150668198 to 150668257 59 - TSS region transcription start site region 26712
Vsx1 2 150680702 to 150689137 8435 - protein coding gene visual system homeobox 1
Cpgi12410 2 150688212 to 150689414 1202 CpG island CpG island 12410
Tssr26713 2 150689014 to 150689020 6 - TSS region transcription start site region 26713
Platr15 2 150704536 to 150706876 2340 - lincRNA gene pluripotency associated transcript 15
Gm28450 2 150723984 to 150724621 637 - lincRNA gene predicted gene 28450
Gm26681 2 150748281 to 150750762 2481 - lincRNA gene predicted gene, 26681
Cpgi12411 2 150748837 to 150749583 746 CpG island CpG island 12411
Tssr20707 2 150749036 to 150749147 111 + TSS region transcription start site region 20707
Entpd6 2 150749042 to 150771675 22633 + protein coding gene ectonucleoside triphosphate diphosphohydrolase 6
Tssr20708 2 150770282 to 150770295 13 + TSS region transcription start site region 20708
Gm30141 2 150773315 to 150786625 13310 - lncRNA gene predicted gene, 30141
Cpgi12412 2 150786449 to 150787372 923 CpG island CpG island 12412
Tssr20709 2 150786740 to 150786794 54 + TSS region transcription start site region 20709
Pygb 2 150786796 to 150831748 44952 + protein coding gene brain glycogen phosphorylase
Tssr20710 2 150786806 to 150786817 11 + TSS region transcription start site region 20710
D2Mit1003 2 150810825 to 150811021 196 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 1003
Tssr26714 2 150822535 to 150822577 42 - TSS region transcription start site region 26714
Abhd12 2 150832493 to 150904731 72238 - protein coding gene abhydrolase domain containing 12
Tssr26715 2 150837388 to 150837437 49 - TSS region transcription start site region 26715
Tssr26716 2 150840167 to 150840179 12 - TSS region transcription start site region 26716
Tssr26717 2 150842365 to 150842387 22 - TSS region transcription start site region 26717
Tssr26718 2 150842398 to 150842409 11 - TSS region transcription start site region 26718
Tssr26719 2 150855649 to 150855701 52 - TSS region transcription start site region 26719
Tssr26720 2 150855706 to 150855720 14 - TSS region transcription start site region 26720
Tssr26721 2 150855728 to 150855774 46 - TSS region transcription start site region 26721
Tssr26722 2 150855828 to 150855848 20 - TSS region transcription start site region 26722
Tssr26723 2 150855918 to 150855946 28 - TSS region transcription start site region 26723
Tssr26724 2 150855999 to 150856030 31 - TSS region transcription start site region 26724
Tssr26725 2 150856048 to 150856070 22 - TSS region transcription start site region 26725
Tssr26726 2 150856107 to 150856129 22 - TSS region transcription start site region 26726
Tssr26727 2 150856145 to 150856161 16 - TSS region transcription start site region 26727
Tssr26728 2 150858827 to 150858857 30 - TSS region transcription start site region 26728
Tssr26729 2 150858873 to 150858889 16 - TSS region transcription start site region 26729
Tssr26730 2 150875059 to 150875090 31 - TSS region transcription start site region 26730
Gm23598 2 150883723 to 150883866 143 + snoRNA gene predicted gene, 23598
Cpgi12413 2 150903874 to 150905049 1175 CpG island CpG island 12413
Tssr26731 2 150904620 to 150904748 128 - TSS region transcription start site region 26731
Cpgi12414 2 150909539 to 150909892 353 CpG island CpG island 12414
Gins1 2 150909556 to 150931280 21724 + protein coding gene GINS complex subunit 1 (Psf1 homolog)
Tssr20711 2 150909565 to 150909642 77 + TSS region transcription start site region 20711
Gm20550 2 150927280 to 150927699 419 + pseudogene predicted gene 20550
Tssr20712 2 150927286 to 150927293 7 + TSS region transcription start site region 20712
Cpgi12415 2 150933428 to 150933684 256 CpG island CpG island 12415
Gm14143 2 150933533 to 150933889 356 + pseudogene predicted gene 14143
Ninl 2 150934519 to 151009398 74879 - protein coding gene ninein-like
Gm14142 2 150946327 to 150946809 482 - pseudogene predicted gene 14142
Gm14141 2 150992182 to 150992964 782 + pseudogene predicted gene 14141
Cpgi12416 2 151008576 to 151009525 949 CpG island CpG island 12416
Tssr26732 2 151009340 to 151009356 16 - TSS region transcription start site region 26732
Tssr26733 2 151009364 to 151009390 26 - TSS region transcription start site region 26733
Nanp 2 151029685 to 151039379 9694 - protein coding gene N-acetylneuraminic acid phosphatase
Cpgi12417 2 151038849 to 151039876 1027 CpG island CpG island 12417
A130094D17Rik 2 151038983 to 151040993 2010 unclassified non-coding RNA gene RIKEN cDNA A130094D17 gene
Tssr26734 2 151039363 to 151039403 40 - TSS region transcription start site region 26734
Tssr20713 2 151039501 to 151039517 16 + TSS region transcription start site region 20713
Gm22187 2 151059955 to 151060083 128 + snoRNA gene predicted gene, 22187
Gm24199 2 151073655 to 151073790 135 - snoRNA gene predicted gene, 24199
Gm14151 2 151086786 to 151092350 5564 - protein coding gene predicted gene 14151
Gm14147 2 151098245 to 151103818 5573 + protein coding gene predicted gene 14147
Gm14145 2 151104892 to 151106326 1434 + lincRNA gene predicted gene 14145
Gm22517 2 151123853 to 151123988 135 + snoRNA gene predicted gene, 22517
Gm30478 2 151127076 to 151143423 16347 + lncRNA gene predicted gene, 30478
Tssr20714 2 151127459 to 151127474 15 + TSS region transcription start site region 20714
Tssr20715 2 151127480 to 151127486 6 + TSS region transcription start site region 20715
Gm14149 2 151205195 to 151231614 26419 + lincRNA gene predicted gene 14149
Gm19264 2 151231899 to 151233504 1605 + pseudogene predicted gene, 19264
Gm14144 2 151264603 to 151278836 14233 - lincRNA gene predicted gene 14144
Gm23005 2 151282975 to 151283110 135 - snoRNA gene predicted gene, 23005
Gm24077 2 151300944 to 151301079 135 + snoRNA gene predicted gene, 24077
Tssr690 2 151302012 to 151302035 23 + TSS region transcription start site region 690
4930442J19Rik 2 151302039 to 151316003 13964 + lincRNA gene RIKEN cDNA 4930442J19 gene
4930488B04Rik 2 151332281 to 151332579 298 unclassified gene RIKEN cDNA 4930488B04 gene
Gm19306 2 151360756 to 151363135 2379 - pseudogene predicted gene, 19306
Gm23261 2 151372363 to 151372498 135 - snoRNA gene predicted gene, 23261
Tssr20716 2 151373932 to 151373941 9 + TSS region transcription start site region 20716
Gm14148 2 151374008 to 151375047 1039 + pseudogene predicted gene 14148
Gm14152 2 151380650 to 151432402 51752 - lincRNA gene predicted gene 14152
Gm46727 2 151390157 to 151391788 1631 + pseudogene predicted gene, 46727
Tssr26735 2 151432375 to 151432380 5 - TSS region transcription start site region 26735
Tssr26736 2 151432392 to 151432403 11 - TSS region transcription start site region 26736
Gm24868 2 151435794 to 151435929 135 - snoRNA gene predicted gene, 24868
Tssr20717 2 151458855 to 151458857 2 + TSS region transcription start site region 20717
Gm14150 2 151458956 to 151460309 1353 + pseudogene predicted gene 14150
Tssr691 2 151459147 to 151459167 20 + TSS region transcription start site region 691
Gm14146 2 151462045 to 151469613 7568 - antisense lncRNA gene predicted gene 14146
4921509C19Rik 2 151470542 to 151476153 5611 - protein coding gene RIKEN cDNA 4921509C19 gene
Tssr20718 2 151485981 to 151485984 3 + TSS region transcription start site region 20718
Tssr20719 2 151488601 to 151488606 5 + TSS region transcription start site region 20719
Cpgi12418 2 151494086 to 151494756 670 CpG island CpG island 12418
Nsfl1c 2 151494182 to 151511310 17128 + protein coding gene NSFL1 (p97) cofactor (p47)
Tssr20720 2 151494183 to 151494203 20 + TSS region transcription start site region 20720
Tssr20721 2 151494274 to 151494304 30 + TSS region transcription start site region 20721
Gm14167 2 151540731 to 151542348 1617 - antisense lncRNA gene predicted gene 14167
Tssr20722 2 151540775 to 151540782 7 + TSS region transcription start site region 20722
Tssr20723 2 151540793 to 151540798 5 + TSS region transcription start site region 20723
Cpgi12419 2 151542162 to 151543366 1204 CpG island CpG island 12419
Tssr26737 2 151542342 to 151542354 12 - TSS region transcription start site region 26737
Tssr26738 2 151542394 to 151542487 93 - TSS region transcription start site region 26738
Tssr20724 2 151542479 to 151542503 24 + TSS region transcription start site region 20724
Fkbp1a 2 151542483 to 151561691 19208 + protein coding gene FK506 binding protein 1a
Tssr20725 2 151542507 to 151542515 8 + TSS region transcription start site region 20725
Tssr20726 2 151542555 to 151542646 91 + TSS region transcription start site region 20726
Tssr20727 2 151542659 to 151542670 11 + TSS region transcription start site region 20727
Tssr20728 2 151542692 to 151542695 3 + TSS region transcription start site region 20728
Tssr20729 2 151542819 to 151542823 4 + TSS region transcription start site region 20729
Tssr20730 2 151543669 to 151543711 42 + TSS region transcription start site region 20730
Tssr20731 2 151543877 to 151543891 14 + TSS region transcription start site region 20731
Tssr20732 2 151543956 to 151544009 53 + TSS region transcription start site region 20732
Tssr20733 2 151558809 to 151558813 4 + TSS region transcription start site region 20733
Tssr20734 2 151561138 to 151561156 18 + TSS region transcription start site region 20734
Tssr26739 2 151563612 to 151563619 7 - TSS region transcription start site region 26739
Gm39959 2 151568962 to 151572210 3248 - lncRNA gene predicted gene, 39959
Tssr20735 2 151572606 to 151572627 21 + TSS region transcription start site region 20735
Sdcbp2 2 151572622 to 151590005 17383 + protein coding gene syndecan binding protein (syntenin) 2
Tssr20736 2 151572628 to 151572673 45 + TSS region transcription start site region 20736
Cpgi12420 2 151575821 to 151576441 620 CpG island CpG island 12420
Snph 2 151590549 to 151632593 42044 - protein coding gene syntaphilin
D2Mit449 2 151623609 to 151623728 119 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 449
Cpgi12421 2 151631623 to 151632737 1114 CpG island CpG island 12421
Tssr26740 2 151632517 to 151632599 82 - TSS region transcription start site region 26740
Tssr26741 2 151632621 to 151632632 11 - TSS region transcription start site region 26741
Gm46786 2 151634879 to 151636501 1622 + lncRNA gene predicted gene, 46786
Gm19180 2 151642990 to 151643632 642 - pseudogene predicted gene, 19180
Tssr26742 2 151645192 to 151645195 3 - TSS region transcription start site region 26742
Rad21l 2 151645404 to 151668533 23129 - protein coding gene RAD21-like (S. pombe)
Cpgi12422 2 151670045 to 151670748 703 CpG island CpG island 12422
Tssr26743 2 151670578 to 151670613 35 - TSS region transcription start site region 26743
Tmem74bos 2 151679361 to 151686339 6978 - antisense lncRNA gene transmembrane 74B, opposite strand
D2Mit424 2 151694657 to 151694807 150 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 424
Gm14159 2 151699476 to 151699926 450 - pseudogene predicted gene 14159
Cpgi12423 2 151701814 to 151703247 1433 CpG island CpG island 12423
Tmem74b 2 151702008 to 151712157 10149 + protein coding gene transmembrane protein 74B
Tssr20737 2 151702182 to 151702213 31 + TSS region transcription start site region 20737
Psmf1 2 151716062 to 151744189 28127 - protein coding gene proteasome (prosome, macropain) inhibitor subunit 1
Tssr26744 2 151718662 to 151718684 22 - TSS region transcription start site region 26744
Tssr26745 2 151729564 to 151729578 14 - TSS region transcription start site region 26745
Tssr26746 2 151729927 to 151729966 39 - TSS region transcription start site region 26746
Cpgi12424 2 151740621 to 151741466 845 CpG island CpG island 12424
Tssr26747 2 151741156 to 151741170 14 - TSS region transcription start site region 26747
Tssr26748 2 151741172 to 151741177 5 - TSS region transcription start site region 26748
Tssr26749 2 151741208 to 151741218 10 - TSS region transcription start site region 26749
Tssr26750 2 151741222 to 151741226 4 - TSS region transcription start site region 26750
Tssr26751 2 151741236 to 151741309 73 - TSS region transcription start site region 26751
Tssr26752 2 151744142 to 151744205 63 - TSS region transcription start site region 26752
Tssr26753 2 151744206 to 151744211 5 - TSS region transcription start site region 26753
4930556L07Rik 2 151747578 to 151749978 2400 - lincRNA gene RIKEN cDNA 4930556L07 gene
Tssr26754 2 151751413 to 151751418 5 - TSS region transcription start site region 26754
Tssr26755 2 151751429 to 151751462 33 - TSS region transcription start site region 26755
Cpgi12425 2 151776026 to 151776325 299 CpG island CpG island 12425
Gm14153 2 151797110 to 151798248 1138 - pseudogene predicted gene 14153
Tailq2 2 151799021 to 162895154 11096133 QTL tail length QTL 2
Scfq1 2 151799021 to 162895154 11096133 QTL subcutaneous fat pad weight QTL 1
Hylaq2 2 151799021 to 164277226 12478205 QTL Hyperlocomotor activity related QTL 2
D2Mit22 2 151799021 to 151799209 188 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 22
Epfq1 2 151799021 to 162895154 11096133 QTL epididymal fat pad weight QTL 1
Tssr20738 2 151827440 to 151827441 1 + TSS region transcription start site region 20738
Gm14155 2 151829067 to 151832108 3041 + lincRNA gene predicted gene 14155
Cpgi12426 2 151842499 to 151843353 854 CpG island CpG island 12426
Tssr20739 2 151842912 to 151842934 22 + TSS region transcription start site region 20739
Rspo4 2 151842927 to 151874668 31741 + protein coding gene R-spondin 4
Rspo4os 2 151865315 to 151866960 1645 - antisense lncRNA gene R-spondin 4, opposite strand
Scgq3 2 151867353 to 174547331 22679978 QTL spontaneous crescentic glomerulonephritis QTL 3
D2Mit26 2 151867353 to 151867538 185 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 26
Tssr20740 2 151911204 to 151911212 8 + TSS region transcription start site region 20740
Angpt4 2 151911332 to 151944654 33322 + protein coding gene angiopoietin 4
Gm14154 2 151947273 to 151950641 3368 - antisense lncRNA gene predicted gene 14154
Tssr26756 2 151959358 to 151959392 34 - TSS region transcription start site region 26756
Tssr26757 2 151961913 to 151961937 24 - TSS region transcription start site region 26757
Tssr20741 2 151962771 to 151962796 25 + TSS region transcription start site region 20741
Mir1953 2 151967529 to 151967617 88 - miRNA gene microRNA 1953
Fam110a 2 151969398 to 151980219 10821 - protein coding gene family with sequence similarity 110, member A
Cpgi12427 2 151969993 to 151971040 1047 CpG island CpG island 12427
Tssr20742 2 151970027 to 151970029 2 + TSS region transcription start site region 20742
Tssr26758 2 151970801 to 151970829 28 - TSS region transcription start site region 26758
Tssr26759 2 151970956 to 151970977 21 - TSS region transcription start site region 26759
Tssr26760 2 151972875 to 151972895 20 - TSS region transcription start site region 26760
Tssr26761 2 151972949 to 151972958 9 - TSS region transcription start site region 26761
Tssr26762 2 151972960 to 151972974 14 - TSS region transcription start site region 26762
Tssr26763 2 151973037 to 151973043 6 - TSS region transcription start site region 26763
Cpgi12428 2 151973257 to 151974225 968 CpG island CpG island 12428
Tssr26764 2 151973271 to 151973281 10 - TSS region transcription start site region 26764
Tssr26765 2 151973309 to 151973316 7 - TSS region transcription start site region 26765
Tssr26766 2 151973354 to 151973372 18 - TSS region transcription start site region 26766
Tssr26767 2 151973387 to 151973399 12 - TSS region transcription start site region 26767
Tssr26768 2 151973400 to 151973423 23 - TSS region transcription start site region 26768
Tssr20743 2 151973412 to 151973425 13 + TSS region transcription start site region 20743
Tssr26769 2 151973438 to 151973453 15 - TSS region transcription start site region 26769
Tssr26770 2 151973458 to 151973472 14 - TSS region transcription start site region 26770
Tssr20744 2 151973461 to 151973468 7 + TSS region transcription start site region 20744
Tssr26771 2 151973811 to 151973822 11 - TSS region transcription start site region 26771
Tssr26772 2 151973840 to 151973858 18 - TSS region transcription start site region 26772
Tssr26773 2 151974078 to 151974101 23 - TSS region transcription start site region 26773