Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:149920341-151280352

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131 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Syndig1 2 149830783 to 150004392 173609 + protein coding gene synapse differentiation inducing 1
Edvq3 2 149952001 to 149952001 0 QTL endothelium dependent vasorelaxation QTL 3
Tssr20695 2 150107599 to 150107602 3 + TSS region transcription start site region 20695
Gm14140 2 150110582 to 150111576 994 - pseudogene predicted gene 14140
Zfp120 2 150114407 to 150136678 22271 - protein coding gene zinc finger protein 120
Tssr26697 2 150136480 to 150136501 21 - TSS region transcription start site region 26697
Tssr26698 2 150136641 to 150136687 46 - TSS region transcription start site region 26698
Gm10770 2 150178882 to 150179576 694 - pseudogene predicted gene 10770
Gm14139 2 150181755 to 150193279 11524 + protein coding gene predicted gene 14139
Tssr20696 2 150181779 to 150181801 22 + TSS region transcription start site region 20696
Zfp937 2 150218073 to 150240725 22652 + protein coding gene zinc finger protein 937
Gm21994 2 150254518 to 150255591 1073 - protein coding gene predicted gene 21994
Tssr20697 2 150257514 to 150257559 45 + TSS region transcription start site region 20697
Gm14124 2 150257517 to 150270300 12783 + protein coding gene predicted gene 14124
Lmr28e 2 150302991 to 150303138 147 QTL leishmaniasis resistance 28e
Lmr28f 2 150302991 to 150303138 147 QTL leishmaniasis resistance 28f
D2Mit283 2 150302991 to 150303138 147 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 283
3110005M07Rik 2 150305527 to 150306206 679 unclassified gene RIKEN cDNA 3110005M07 gene
Gm14125 2 150305745 to 150306617 872 + pseudogene predicted gene 14125
Tssr20698 2 150305750 to 150305757 7 + TSS region transcription start site region 20698
Tssr26699 2 150306774 to 150306780 6 - TSS region transcription start site region 26699
Tssr26700 2 150306801 to 150306813 12 - TSS region transcription start site region 26700
3300002I08Rik 2 150310935 to 150362765 51830 - protein coding gene RIKEN cDNA 3300002I08 gene
Gm10130 2 150311226 to 150326982 15756 + protein coding gene predicted gene 10130
Tssr20699 2 150311431 to 150311459 28 + TSS region transcription start site region 20699
Tssr20700 2 150311465 to 150311498 33 + TSS region transcription start site region 20700
Gm19638 2 150335344 to 150337782 2438 protein coding gene predicted gene, 19638
Tssr26701 2 150362688 to 150362698 10 - TSS region transcription start site region 26701
Tssr26702 2 150362708 to 150362753 45 - TSS region transcription start site region 26702
Gm14126 2 150378878 to 150379272 394 - pseudogene predicted gene 14126
Gm14122 2 150398256 to 150399399 1143 - pseudogene predicted gene 14122
Zfp442 2 150407141 to 150451486 44345 - protein coding gene zinc finger protein 442
Gm14127 2 150469411 to 150470165 754 - pseudogene predicted gene 14127
Cpgi12405 2 150470074 to 150470293 219 CpG island CpG island 12405
Zfp345 2 150470991 to 150485063 14072 - protein coding gene zinc finger protein 345
Gm14121 2 150499469 to 150500821 1352 - pseudogene predicted gene 14121
Cpgi12406 2 150500360 to 150500926 566 CpG island CpG island 12406
Gm14128 2 150521090 to 150522285 1195 + pseudogene predicted gene 14128
Cpgi12407 2 150525584 to 150526275 691 CpG island CpG island 12407
Tssr20701 2 150567326 to 150567351 25 + TSS region transcription start site region 20701
Tssr20702 2 150570372 to 150570381 9 + TSS region transcription start site region 20702
Tssr20703 2 150570409 to 150570420 11 + TSS region transcription start site region 20703
Cst7 2 150570415 to 150578944 8529 + protein coding gene cystatin F (leukocystatin)
Tssr20704 2 150570427 to 150570483 56 + TSS region transcription start site region 20704
Tssr20705 2 150570496 to 150570505 9 + TSS region transcription start site region 20705
Apmap 2 150583081 to 150608558 25477 - protein coding gene adipocyte plasma membrane associated protein
Tssr26703 2 150600341 to 150600352 11 - TSS region transcription start site region 26703
Tssr26704 2 150600354 to 150600367 13 - TSS region transcription start site region 26704
Tssr26705 2 150600374 to 150600383 9 - TSS region transcription start site region 26705
Tssr26706 2 150600397 to 150600413 16 - TSS region transcription start site region 26706
Tssr26707 2 150600415 to 150600463 48 - TSS region transcription start site region 26707
Gm14123 2 150606233 to 150610254 4021 + unclassified non-coding RNA gene predicted gene 14123
Cpgi12408 2 150607977 to 150608788 811 CpG island CpG island 12408
Tssr26708 2 150608490 to 150608501 11 - TSS region transcription start site region 26708
Tssr26709 2 150608502 to 150608561 59 - TSS region transcription start site region 26709
D2Mit261 2 150616541 to 150616652 111 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 261
Acss1 2 150618111 to 150668240 50129 - protein coding gene acyl-CoA synthetase short-chain family member 1
Tssr26710 2 150619347 to 150619372 25 - TSS region transcription start site region 26710
Tssr26711 2 150638095 to 150638107 12 - TSS region transcription start site region 26711
D2Dcr105 2 150641786 to 150641881 95 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 105
Tssr20706 2 150667385 to 150667421 36 + TSS region transcription start site region 20706
E130215H24Rik 2 150667494 to 150668932 1438 + lncRNA gene RIKEN cDNA E130215H24 gene
Cpgi12409 2 150667685 to 150668575 890 CpG island CpG island 12409
Tssr26712 2 150668198 to 150668257 59 - TSS region transcription start site region 26712
Vsx1 2 150680702 to 150689137 8435 - protein coding gene visual system homeobox 1
Cpgi12410 2 150688212 to 150689414 1202 CpG island CpG island 12410
Tssr26713 2 150689014 to 150689020 6 - TSS region transcription start site region 26713
Platr15 2 150704536 to 150706876 2340 - lincRNA gene pluripotency associated transcript 15
Gm28450 2 150723984 to 150724621 637 - lincRNA gene predicted gene 28450
Gm26681 2 150748281 to 150750762 2481 - lincRNA gene predicted gene, 26681
Cpgi12411 2 150748837 to 150749583 746 CpG island CpG island 12411
Tssr20707 2 150749036 to 150749147 111 + TSS region transcription start site region 20707
Entpd6 2 150749042 to 150771675 22633 + protein coding gene ectonucleoside triphosphate diphosphohydrolase 6
Tssr20708 2 150770282 to 150770295 13 + TSS region transcription start site region 20708
Gm30141 2 150773315 to 150786625 13310 - lncRNA gene predicted gene, 30141
Cpgi12412 2 150786449 to 150787372 923 CpG island CpG island 12412
Tssr20709 2 150786740 to 150786794 54 + TSS region transcription start site region 20709
Pygb 2 150786796 to 150831748 44952 + protein coding gene brain glycogen phosphorylase
Tssr20710 2 150786806 to 150786817 11 + TSS region transcription start site region 20710
D2Mit1003 2 150810825 to 150811021 196 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 1003
Tssr26714 2 150822535 to 150822577 42 - TSS region transcription start site region 26714
Abhd12 2 150832493 to 150904731 72238 - protein coding gene abhydrolase domain containing 12
Tssr26715 2 150837388 to 150837437 49 - TSS region transcription start site region 26715
Tssr26716 2 150840167 to 150840179 12 - TSS region transcription start site region 26716
Tssr26717 2 150842365 to 150842387 22 - TSS region transcription start site region 26717
Tssr26718 2 150842398 to 150842409 11 - TSS region transcription start site region 26718
Tssr26719 2 150855649 to 150855701 52 - TSS region transcription start site region 26719
Tssr26720 2 150855706 to 150855720 14 - TSS region transcription start site region 26720
Tssr26721 2 150855728 to 150855774 46 - TSS region transcription start site region 26721
Tssr26722 2 150855828 to 150855848 20 - TSS region transcription start site region 26722
Tssr26723 2 150855918 to 150855946 28 - TSS region transcription start site region 26723
Tssr26724 2 150855999 to 150856030 31 - TSS region transcription start site region 26724
Tssr26725 2 150856048 to 150856070 22 - TSS region transcription start site region 26725
Tssr26726 2 150856107 to 150856129 22 - TSS region transcription start site region 26726
Tssr26727 2 150856145 to 150856161 16 - TSS region transcription start site region 26727
Tssr26728 2 150858827 to 150858857 30 - TSS region transcription start site region 26728
Tssr26729 2 150858873 to 150858889 16 - TSS region transcription start site region 26729
Tssr26730 2 150875059 to 150875090 31 - TSS region transcription start site region 26730
Gm23598 2 150883723 to 150883866 143 + snoRNA gene predicted gene, 23598
Cpgi12413 2 150903874 to 150905049 1175 CpG island CpG island 12413
Tssr26731 2 150904620 to 150904748 128 - TSS region transcription start site region 26731
Cpgi12414 2 150909539 to 150909892 353 CpG island CpG island 12414
Gins1 2 150909556 to 150931280 21724 + protein coding gene GINS complex subunit 1 (Psf1 homolog)
Tssr20711 2 150909565 to 150909642 77 + TSS region transcription start site region 20711
Gm20550 2 150927280 to 150927699 419 + pseudogene predicted gene 20550
Tssr20712 2 150927286 to 150927293 7 + TSS region transcription start site region 20712
Cpgi12415 2 150933428 to 150933684 256 CpG island CpG island 12415
Gm14143 2 150933533 to 150933889 356 + pseudogene predicted gene 14143
Ninl 2 150934519 to 151009398 74879 - protein coding gene ninein-like
Gm14142 2 150946327 to 150946809 482 - pseudogene predicted gene 14142
Gm14141 2 150992182 to 150992964 782 + pseudogene predicted gene 14141
Cpgi12416 2 151008576 to 151009525 949 CpG island CpG island 12416
Tssr26732 2 151009340 to 151009356 16 - TSS region transcription start site region 26732
Tssr26733 2 151009364 to 151009390 26 - TSS region transcription start site region 26733
Nanp 2 151029685 to 151039379 9694 - protein coding gene N-acetylneuraminic acid phosphatase
Cpgi12417 2 151038849 to 151039876 1027 CpG island CpG island 12417
A130094D17Rik 2 151038983 to 151040993 2010 unclassified non-coding RNA gene RIKEN cDNA A130094D17 gene
Tssr26734 2 151039363 to 151039403 40 - TSS region transcription start site region 26734
Tssr20713 2 151039501 to 151039517 16 + TSS region transcription start site region 20713
Gm22187 2 151059955 to 151060083 128 + snoRNA gene predicted gene, 22187
Gm24199 2 151073655 to 151073790 135 - snoRNA gene predicted gene, 24199
Gm14151 2 151086786 to 151092350 5564 - protein coding gene predicted gene 14151
Gm14147 2 151098245 to 151103818 5573 + protein coding gene predicted gene 14147
Gm14145 2 151104892 to 151106326 1434 + lincRNA gene predicted gene 14145
Gm22517 2 151123853 to 151123988 135 + snoRNA gene predicted gene, 22517
Gm30478 2 151127076 to 151143423 16347 + lncRNA gene predicted gene, 30478
Tssr20714 2 151127459 to 151127474 15 + TSS region transcription start site region 20714
Tssr20715 2 151127480 to 151127486 6 + TSS region transcription start site region 20715
Gm14149 2 151205195 to 151231614 26419 + lincRNA gene predicted gene 14149
Gm19264 2 151231899 to 151233504 1605 + pseudogene predicted gene, 19264
Gm14144 2 151264603 to 151278836 14233 - lincRNA gene predicted gene 14144