Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:149205783-150629392

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82 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr20685 2 149257011 to 149257029 18 + TSS region transcription start site region 20685
Gm14135 2 149257277 to 149262145 4868 + lincRNA gene predicted gene 14135
Tssr20686 2 149283603 to 149283607 4 + TSS region transcription start site region 20686
Gm14132 2 149333077 to 149334789 1712 - pseudogene predicted gene 14132
Gm14131 2 149356687 to 149357405 718 + pseudogene predicted gene 14131
Tssr20687 2 149405010 to 149405028 18 + TSS region transcription start site region 20687
Cst10 2 149405249 to 149410278 5029 + protein coding gene cystatin 10 (chondrocytes)
Tssr20688 2 149405305 to 149405312 7 + TSS region transcription start site region 20688
Tssr20689 2 149405315 to 149405332 17 + TSS region transcription start site region 20689
D2Mit408 2 149494735 to 149494844 109 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 408
Gm24551 2 149566194 to 149566285 91 - snoRNA gene predicted gene, 24551
D2Mit110 2 149585526 to 149585631 105 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 110
Gm14130 2 149743175 to 149744161 986 + pseudogene predicted gene 14130
Gm14133 2 149743927 to 149798743 54816 - lincRNA gene predicted gene 14133
Tssr26695 2 149798716 to 149798729 13 - TSS region transcription start site region 26695
Tssr26696 2 149798807 to 149798824 17 - TSS region transcription start site region 26696
Cpgi12404 2 149830294 to 149831712 1418 CpG island CpG island 12404
C530025M09Rik 2 149830524 to 149831213 689 - protein coding gene RIKEN cDNA C530025M09 gene
Syndig1 2 149830783 to 150004392 173609 + protein coding gene synapse differentiation inducing 1
Tssr20690 2 149830789 to 149830807 18 + TSS region transcription start site region 20690
Tssr20691 2 149830813 to 149830831 18 + TSS region transcription start site region 20691
Tssr20692 2 149830840 to 149830879 39 + TSS region transcription start site region 20692
Tssr20693 2 149830894 to 149830907 13 + TSS region transcription start site region 20693
Gm18167 2 149867507 to 149868171 664 + pseudogene predicted gene, 18167
Tssr20694 2 149899681 to 149899684 3 + TSS region transcription start site region 20694
Edvq3 2 149952001 to 149952001 0 QTL endothelium dependent vasorelaxation QTL 3
Tssr20695 2 150107599 to 150107602 3 + TSS region transcription start site region 20695
Gm14140 2 150110582 to 150111576 994 - pseudogene predicted gene 14140
Zfp120 2 150114407 to 150136678 22271 - protein coding gene zinc finger protein 120
Tssr26697 2 150136480 to 150136501 21 - TSS region transcription start site region 26697
Tssr26698 2 150136641 to 150136687 46 - TSS region transcription start site region 26698
Gm10770 2 150178882 to 150179576 694 - pseudogene predicted gene 10770
Gm14139 2 150181755 to 150193279 11524 + protein coding gene predicted gene 14139
Tssr20696 2 150181779 to 150181801 22 + TSS region transcription start site region 20696
Zfp937 2 150218073 to 150240725 22652 + protein coding gene zinc finger protein 937
Gm21994 2 150254518 to 150255591 1073 - protein coding gene predicted gene 21994
Tssr20697 2 150257514 to 150257559 45 + TSS region transcription start site region 20697
Gm14124 2 150257517 to 150270300 12783 + protein coding gene predicted gene 14124
Lmr28f 2 150302991 to 150303138 147 QTL leishmaniasis resistance 28f
D2Mit283 2 150302991 to 150303138 147 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 283
Lmr28e 2 150302991 to 150303138 147 QTL leishmaniasis resistance 28e
3110005M07Rik 2 150305527 to 150306206 679 unclassified gene RIKEN cDNA 3110005M07 gene
Gm14125 2 150305745 to 150306617 872 + pseudogene predicted gene 14125
Tssr20698 2 150305750 to 150305757 7 + TSS region transcription start site region 20698
Tssr26699 2 150306774 to 150306780 6 - TSS region transcription start site region 26699
Tssr26700 2 150306801 to 150306813 12 - TSS region transcription start site region 26700
3300002I08Rik 2 150310935 to 150362765 51830 - protein coding gene RIKEN cDNA 3300002I08 gene
Gm10130 2 150311226 to 150326982 15756 + protein coding gene predicted gene 10130
Tssr20699 2 150311431 to 150311459 28 + TSS region transcription start site region 20699
Tssr20700 2 150311465 to 150311498 33 + TSS region transcription start site region 20700
Gm19638 2 150335344 to 150337782 2438 protein coding gene predicted gene, 19638
Tssr26701 2 150362688 to 150362698 10 - TSS region transcription start site region 26701
Tssr26702 2 150362708 to 150362753 45 - TSS region transcription start site region 26702
Gm14126 2 150378878 to 150379272 394 - pseudogene predicted gene 14126
Gm14122 2 150398256 to 150399399 1143 - pseudogene predicted gene 14122
Zfp442 2 150407141 to 150451486 44345 - protein coding gene zinc finger protein 442
Gm14127 2 150469411 to 150470165 754 - pseudogene predicted gene 14127
Cpgi12405 2 150470074 to 150470293 219 CpG island CpG island 12405
Zfp345 2 150470991 to 150485063 14072 - protein coding gene zinc finger protein 345
Gm14121 2 150499469 to 150500821 1352 - pseudogene predicted gene 14121
Cpgi12406 2 150500360 to 150500926 566 CpG island CpG island 12406
Gm14128 2 150521090 to 150522285 1195 + pseudogene predicted gene 14128
Cpgi12407 2 150525584 to 150526275 691 CpG island CpG island 12407
Tssr20701 2 150567326 to 150567351 25 + TSS region transcription start site region 20701
Tssr20702 2 150570372 to 150570381 9 + TSS region transcription start site region 20702
Tssr20703 2 150570409 to 150570420 11 + TSS region transcription start site region 20703
Cst7 2 150570415 to 150578944 8529 + protein coding gene cystatin F (leukocystatin)
Tssr20704 2 150570427 to 150570483 56 + TSS region transcription start site region 20704
Tssr20705 2 150570496 to 150570505 9 + TSS region transcription start site region 20705
Apmap 2 150583081 to 150608558 25477 - protein coding gene adipocyte plasma membrane associated protein
Tssr26703 2 150600341 to 150600352 11 - TSS region transcription start site region 26703
Tssr26704 2 150600354 to 150600367 13 - TSS region transcription start site region 26704
Tssr26705 2 150600374 to 150600383 9 - TSS region transcription start site region 26705
Tssr26706 2 150600397 to 150600413 16 - TSS region transcription start site region 26706
Tssr26707 2 150600415 to 150600463 48 - TSS region transcription start site region 26707
Gm14123 2 150606233 to 150610254 4021 + unclassified non-coding RNA gene predicted gene 14123
Cpgi12408 2 150607977 to 150608788 811 CpG island CpG island 12408
Tssr26708 2 150608490 to 150608501 11 - TSS region transcription start site region 26708
Tssr26709 2 150608502 to 150608561 59 - TSS region transcription start site region 26709
D2Mit261 2 150616541 to 150616652 111 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 261
Acss1 2 150618111 to 150668240 50129 - protein coding gene acyl-CoA synthetase short-chain family member 1
Tssr26710 2 150619347 to 150619372 25 - TSS region transcription start site region 26710