Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:148790559-149380562

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76 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Otx2m2 2 123390053 to 148858457 25468404 QTL orthodenticle homolog 2 modifier 2
Cst12 2 148789361 to 148793437 4076 + protein coding gene cystatin 12
Tssr20656 2 148798611 to 148798621 10 + TSS region transcription start site region 20656
Tssr20657 2 148798650 to 148798658 8 + TSS region transcription start site region 20657
Tssr20658 2 148798812 to 148798844 32 + TSS region transcription start site region 20658
Cst8 2 148798839 to 148805596 6757 + protein coding gene cystatin 8 (cystatin-related epididymal spermatogenic)
Tssr20659 2 148798849 to 148798870 21 + TSS region transcription start site region 20659
Tssr20660 2 148798872 to 148798886 14 + TSS region transcription start site region 20660
Tssr20661 2 148799487 to 148799498 11 + TSS region transcription start site region 20661
Tssr20662 2 148799528 to 148799534 6 + TSS region transcription start site region 20662
Tssr20663 2 148799554 to 148799563 9 + TSS region transcription start site region 20663
Tssr20664 2 148799627 to 148799654 27 + TSS region transcription start site region 20664
Tssr20665 2 148799656 to 148799674 18 + TSS region transcription start site region 20665
Tssr20666 2 148799704 to 148799717 13 + TSS region transcription start site region 20666
Tssr20667 2 148799742 to 148799756 14 + TSS region transcription start site region 20667
Tssr20668 2 148799873 to 148799891 18 + TSS region transcription start site region 20668
Tssr20669 2 148799905 to 148799910 5 + TSS region transcription start site region 20669
Tssr20670 2 148799949 to 148799967 18 + TSS region transcription start site region 20670
Tssr20671 2 148806019 to 148806025 6 + TSS region transcription start site region 20671
Cst13 2 148820081 to 148830410 10329 + protein coding gene cystatin 13
Tssr20672 2 148820098 to 148820111 13 + TSS region transcription start site region 20672
Tssr20673 2 148820116 to 148820124 8 + TSS region transcription start site region 20673
D2Mit423 2 148825415 to 148825550 135 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 423
Hylaq1 2 148825550 to 84182854 -64642696 QTL Hyperlocomotor activity related QTL 1
Tssr20674 2 148835116 to 148835125 9 + TSS region transcription start site region 20674
Tssr20675 2 148835140 to 148835193 53 + TSS region transcription start site region 20675
Cst9 2 148835147 to 148838737 3590 + protein coding gene cystatin 9
Tssr20676 2 148835194 to 148835195 1 + TSS region transcription start site region 20676
Tssr20677 2 148835197 to 148835227 30 + TSS region transcription start site region 20677
Tssr20678 2 148835333 to 148835334 1 + TSS region transcription start site region 20678
Cstdc2 2 148844620 to 148850966 6346 - protein coding gene cystatin domain containing 2
Tssr26677 2 148850899 to 148850954 55 - TSS region transcription start site region 26677
Tssr26678 2 148850959 to 148850985 26 - TSS region transcription start site region 26678
Tssr26679 2 148851123 to 148851130 7 - TSS region transcription start site region 26679
Tssr26680 2 148851165 to 148851170 5 - TSS region transcription start site region 26680
Tssr26681 2 148851183 to 148851194 11 - TSS region transcription start site region 26681
Tssr689 2 148851207 to 148851213 6 - TSS region transcription start site region 689
D2Mit282 2 148858318 to 148858457 139 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 282
D2Mit340 2 148858324 to 148858477 153 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 340
D2Dcr104 2 148858358 to 148858453 95 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 104
D2Mit282.1 2 148858439 to 148858559 120 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 282.1
Dssc2 2 148858457 to 24334620 -124523837 QTL dextran sodium sulfate induced colitis QTL2
Tssr20679 2 148871717 to 148871732 15 + TSS region transcription start site region 20679
Cst3 2 148871722 to 148875512 3790 - protein coding gene cystatin C
Tssr26682 2 148871951 to 148871960 9 - TSS region transcription start site region 26682
Tssr20680 2 148871959 to 148871994 35 + TSS region transcription start site region 20680
Tssr26683 2 148871992 to 148872010 18 - TSS region transcription start site region 26683
Tssr26684 2 148872020 to 148872047 27 - TSS region transcription start site region 26684
Tssr20681 2 148872851 to 148872891 40 + TSS region transcription start site region 20681
Tssr26685 2 148872871 to 148872906 35 - TSS region transcription start site region 26685
Tssr26686 2 148872924 to 148872939 15 - TSS region transcription start site region 26686
Tssr26687 2 148873043 to 148873070 27 - TSS region transcription start site region 26687
Cpgi12403 2 148874764 to 148875613 849 CpG island CpG island 12403
Tssr20682 2 148875148 to 148875171 23 + TSS region transcription start site region 20682
Tssr20683 2 148875224 to 148875256 32 + TSS region transcription start site region 20683
Tssr26688 2 148875421 to 148875444 23 - TSS region transcription start site region 26688
Tssr26689 2 148875452 to 148875488 36 - TSS region transcription start site region 26689
Tssr26690 2 148875604 to 148875616 12 - TSS region transcription start site region 26690
Tssr26691 2 148875623 to 148875641 18 - TSS region transcription start site region 26691
Gm38221 2 148889924 to 148890288 364 - unclassified gene predicted gene, 38221
D2Mit406 2 148896175 to 148896321 146 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 406
Gm14129 2 148927735 to 148931707 3972 - pseudogene predicted gene 14129
Gm1330 2 148990343 to 149003251 12908 - protein coding gene predicted gene 1330
Tssr26692 2 149003302 to 149003324 22 - TSS region transcription start site region 26692
Gm9425 2 149015024 to 149016354 1330 + pseudogene predicted gene 9425
Gm10750 2 149015732 to 149017237 1505 - protein coding gene predicted gene 10750
Tssr20684 2 149085559 to 149085562 3 + TSS region transcription start site region 20684
Tssr26693 2 149092384 to 149092394 10 - TSS region transcription start site region 26693
Tssr26694 2 149092417 to 149092426 9 - TSS region transcription start site region 26694
Bts1 2 149182239 to 149182410 171 QTL bladder tumor susceptibility 1
D2Mit260 2 149182239 to 149182410 171 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 260
Tssr20685 2 149257011 to 149257029 18 + TSS region transcription start site region 20685
Gm14135 2 149257277 to 149262145 4868 + lincRNA gene predicted gene 14135
Tssr20686 2 149283603 to 149283607 4 + TSS region transcription start site region 20686
Gm14132 2 149333077 to 149334789 1712 - pseudogene predicted gene 14132
Gm14131 2 149356687 to 149357405 718 + pseudogene predicted gene 14131