Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:147950489-148611156

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75 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
9030622O22Rik 2 147944740 to 148040203 95463 - lincRNA gene RIKEN cDNA 9030622O22 gene
Tssr26634 2 147977147 to 147977151 4 - TSS region transcription start site region 26634
Tssr26635 2 148009273 to 148009297 24 - TSS region transcription start site region 26635
Tssr26636 2 148022032 to 148022050 18 - TSS region transcription start site region 26636
Tssr685 2 148022052 to 148022055 3 - TSS region transcription start site region 685
Cpgi12390 2 148030471 to 148030683 212 CpG island CpG island 12390
Tssr26637 2 148034033 to 148034037 4 - TSS region transcription start site region 26637
Tssr26638 2 148038288 to 148038299 11 - TSS region transcription start site region 26638
Cpgi12391 2 148038480 to 148038920 440 CpG island CpG island 12391
Cpgi12392 2 148039314 to 148040290 976 CpG island CpG island 12392
Tssr26639 2 148040196 to 148040211 15 - TSS region transcription start site region 26639
Cpgi12393 2 148040800 to 148041037 237 CpG island CpG island 12393
Foxa2 2 148042877 to 148046969 4092 - protein coding gene forkhead box A2
Cpgi12394 2 148043600 to 148047104 3504 CpG island CpG island 12394
Tssr26640 2 148045891 to 148045905 14 - TSS region transcription start site region 26640
Tssr26641 2 148046212 to 148046241 29 - TSS region transcription start site region 26641
Tssr26642 2 148046338 to 148046343 5 - TSS region transcription start site region 26642
Tssr26643 2 148046984 to 148046991 7 - TSS region transcription start site region 26643
Tssr26644 2 148047054 to 148047085 31 - TSS region transcription start site region 26644
Cpgi12395 2 148048609 to 148049289 680 CpG island CpG island 12395
Gm27420 2 148053124 to 148053202 78 + miRNA gene predicted gene, 27420
Gm14108 2 148071346 to 148071839 493 - pseudogene predicted gene 14108
Tssr20638 2 148098754 to 148098759 5 + TSS region transcription start site region 20638
Gm24221 2 148151150 to 148151462 312 + snoRNA gene predicted gene, 24221
Gm36597 2 148170607 to 148182350 11743 + lncRNA gene predicted gene, 36597
2310021N16Rik 2 148280489 to 148281156 667 unclassified gene RIKEN cDNA 2310021N16 gene
D2Mit57 2 148302385 to 148302497 112 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 57
Tssr26645 2 148349382 to 148349393 11 - TSS region transcription start site region 26645
Gm39957 2 148376330 to 148391907 15577 - lncRNA gene predicted gene, 39957
Cpgi12396 2 148394963 to 148396440 1477 CpG island CpG island 12396
Tssr20639 2 148395338 to 148395356 18 + TSS region transcription start site region 20639
Tssr20640 2 148395369 to 148395413 44 + TSS region transcription start site region 20640
Sstr4 2 148395377 to 148396764 1387 + protein coding gene somatostatin receptor 4
Tssr20641 2 148395853 to 148395882 29 + TSS region transcription start site region 20641
Tssr26646 2 148395866 to 148395894 28 - TSS region transcription start site region 26646
Tssr26647 2 148397021 to 148397036 15 - TSS region transcription start site region 26647
Tssr686 2 148397477 to 148397480 3 + TSS region transcription start site region 686
Tssr20642 2 148397488 to 148397493 5 + TSS region transcription start site region 20642
Tssr20643 2 148397529 to 148397538 9 + TSS region transcription start site region 20643
Tssr687 2 148397559 to 148397565 6 + TSS region transcription start site region 687
Tssr26648 2 148403939 to 148403942 3 - TSS region transcription start site region 26648
Thbd 2 148404471 to 148408188 3717 - protein coding gene thrombomodulin
Tssr26649 2 148405504 to 148405507 3 - TSS region transcription start site region 26649
Cpgi12397 2 148406115 to 148408460 2345 CpG island CpG island 12397
Tssr26650 2 148408106 to 148408127 21 - TSS region transcription start site region 26650
Tssr26651 2 148408146 to 148408155 9 - TSS region transcription start site region 26651
D2Mit1006 2 148409245 to 148409452 207 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 1006
Gm14119 2 148419032 to 148419266 234 - pseudogene predicted gene 14119
4833411I10Rik 2 148428221 to 148431014 2793 unclassified gene RIKEN cDNA 4833411I10 gene
Tssr26652 2 148436074 to 148436096 22 - TSS region transcription start site region 26652
Cd93 2 148436651 to 148443535 6884 - protein coding gene CD93 antigen
Tssr26653 2 148437023 to 148437070 47 - TSS region transcription start site region 26653
Tssr26654 2 148437204 to 148437218 14 - TSS region transcription start site region 26654
Tssr26655 2 148438256 to 148438275 19 - TSS region transcription start site region 26655
Tssr26656 2 148438396 to 148438414 18 - TSS region transcription start site region 26656
Tssr26657 2 148438440 to 148438453 13 - TSS region transcription start site region 26657
Tssr26658 2 148439800 to 148439814 14 - TSS region transcription start site region 26658
Tssr26659 2 148439880 to 148439900 20 - TSS region transcription start site region 26659
Tssr20644 2 148440151 to 148440153 2 + TSS region transcription start site region 20644
Tssr26660 2 148440893 to 148440914 21 - TSS region transcription start site region 26660
Tssr26661 2 148441771 to 148441829 58 - TSS region transcription start site region 26661
Cpgi12398 2 148442440 to 148442621 181 CpG island CpG island 12398
Tssr26662 2 148443429 to 148443444 15 - TSS region transcription start site region 26662
Tssr26663 2 148443509 to 148443520 11 - TSS region transcription start site region 26663
Tssr26664 2 148443530 to 148443542 12 - TSS region transcription start site region 26664
Tssr26665 2 148443543 to 148443582 39 - TSS region transcription start site region 26665
Tssr26666 2 148443624 to 148443626 2 - TSS region transcription start site region 26666
D2Mit519 2 148456561 to 148456679 118 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology-519
Gm14120 2 148468890 to 148478780 9890 + lincRNA gene predicted gene 14120
Tssr20645 2 148499986 to 148499990 4 + TSS region transcription start site region 20645
Gm46770 2 148520638 to 148562141 41503 - lncRNA gene predicted gene, 46770
Tssr688 2 148522374 to 148522375 1 + TSS region transcription start site region 688
Tssr20646 2 148522557 to 148522586 29 + TSS region transcription start site region 20646
D2Mit281 2 148532866 to 148533014 148 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 281
T2dm2sa 2 148533014 to 29417935 -119115079 QTL type 2 diabetes mellitus 2 in SMXA RI mice