Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:146975980-148055981

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96 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi12374 2 147012713 to 147013804 1091 CpG island CpG island 12374
Tssr20617 2 147012744 to 147012794 50 + TSS region transcription start site region 20617
Xrn2 2 147012996 to 147078000 65004 + protein coding gene 5'-3' exoribonuclease 2
Tssr20618 2 147013013 to 147013083 70 + TSS region transcription start site region 20618
Tssr26624 2 147013317 to 147013335 18 - TSS region transcription start site region 26624
Tssr26625 2 147013785 to 147013799 14 - TSS region transcription start site region 26625
Tssr20619 2 147013858 to 147013867 9 + TSS region transcription start site region 20619
Tssr20620 2 147013922 to 147013932 10 + TSS region transcription start site region 20620
Tssr20621 2 147014760 to 147014764 4 + TSS region transcription start site region 20621
Tssr20622 2 147029863 to 147029878 15 + TSS region transcription start site region 20622
Tssr20623 2 147046969 to 147046973 4 + TSS region transcription start site region 20623
Tssr20624 2 147072596 to 147072600 4 + TSS region transcription start site region 20624
Nkx2-4 2 147083337 to 147085439 2102 - protein coding gene NK2 homeobox 4
Cpgi12375 2 147083616 to 147085952 2336 CpG island CpG island 12375
Tssr26626 2 147085464 to 147085483 19 - TSS region transcription start site region 26626
Gm34889 2 147085506 to 147127803 42297 + lncRNA gene predicted gene, 34889
Gm14116 2 147146408 to 147147212 804 - pseudogene predicted gene 14116
Nkx2-2 2 147177546 to 147194243 16697 - protein coding gene NK2 homeobox 2
Cpgi12376 2 147178293 to 147178499 206 CpG island CpG island 12376
Cpgi12377 2 147178642 to 147179094 452 CpG island CpG island 12377
Cpgi12378 2 147180817 to 147181269 452 CpG island CpG island 12378
Cpgi12379 2 147183903 to 147184991 1088 CpG island CpG island 12379
Nkx2-2os 2 147184083 to 147331681 147598 + antisense lncRNA gene NK2 homeobox 2, opposite strand
Cpgi12380 2 147185639 to 147186500 861 CpG island CpG island 12380
Tssr26627 2 147185798 to 147185835 37 - TSS region transcription start site region 26627
Tssr26628 2 147186365 to 147186382 17 - TSS region transcription start site region 26628
Tssr26629 2 147186389 to 147186413 24 - TSS region transcription start site region 26629
Cpgi12381 2 147187395 to 147187737 342 CpG island CpG island 12381
6430503K07Rik 2 147187424 to 147188407 983 + antisense lncRNA gene RIKEN cDNA 6430503K07 gene
Cpgi12382 2 147187986 to 147188331 345 CpG island CpG island 12382
Cpgi12383 2 147190211 to 147191132 921 CpG island CpG island 12383
Cpgi12384 2 147193787 to 147195595 1808 CpG island CpG island 12384
Tssr26630 2 147194241 to 147194249 8 - TSS region transcription start site region 26630
Tssr682 2 147237389 to 147237391 2 + TSS region transcription start site region 682
Gm39955 2 147248650 to 147256877 8227 - lncRNA gene predicted gene, 39955
Gm22261 2 147250462 to 147250785 323 - unclassified non-coding RNA gene predicted gene, 22261
Tssr683 2 147275629 to 147275633 4 + TSS region transcription start site region 683
Gm14115 2 147280603 to 147281084 481 - pseudogene predicted gene 14115
Tssr26631 2 147281121 to 147281125 4 - TSS region transcription start site region 26631
Gm14113 2 147289755 to 147290730 975 + pseudogene predicted gene 14113
Gm14110 2 147323562 to 147325087 1525 - lincRNA gene predicted gene 14110
AI646519 2 147361541 to 147362793 1252 - antisense lncRNA gene expressed sequence AI646519
Cpgi12385 2 147361663 to 147361891 228 CpG island CpG island 12385
Pax1 2 147361918 to 147375049 13131 + protein coding gene paired box 1
Tssr20625 2 147361959 to 147361966 7 + TSS region transcription start site region 20625
Cpgi12386 2 147362267 to 147362610 343 CpG island CpG island 12386
Tssr26632 2 147362435 to 147362448 13 - TSS region transcription start site region 26632
Cpgi12387 2 147364580 to 147366446 1866 CpG island CpG island 12387
Tssr20626 2 147364955 to 147364962 7 + TSS region transcription start site region 20626
Tssr20627 2 147364989 to 147365011 22 + TSS region transcription start site region 20627
Tssr20628 2 147365013 to 147365033 20 + TSS region transcription start site region 20628
Tssr20629 2 147365036 to 147365047 11 + TSS region transcription start site region 20629
Tssr20630 2 147366139 to 147366159 20 + TSS region transcription start site region 20630
Cpgi12388 2 147368180 to 147368638 458 CpG island CpG island 12388
Cpgi12389 2 147373247 to 147373897 650 CpG island CpG island 12389
Tssr20631 2 147373848 to 147373863 15 + TSS region transcription start site region 20631
Tssr20632 2 147373909 to 147373919 10 + TSS region transcription start site region 20632
Tssr20633 2 147373947 to 147373955 8 + TSS region transcription start site region 20633
Tssr20634 2 147374035 to 147374048 13 + TSS region transcription start site region 20634
Tssr20635 2 147375528 to 147375529 1 + TSS region transcription start site region 20635
Gm14109 2 147402954 to 147403262 308 - pseudogene predicted gene 14109
Gm39956 2 147427956 to 147431399 3443 - lncRNA gene predicted gene, 39956
Tssr26633 2 147431403 to 147431411 8 - TSS region transcription start site region 26633
Gm35479 2 147431764 to 147480245 48481 + lncRNA gene predicted gene, 35479
Tssr20636 2 147435498 to 147435510 12 + TSS region transcription start site region 20636
Tssr20637 2 147515980 to 147515981 1 + TSS region transcription start site region 20637
Tssr684 2 147531780 to 147531782 2 + TSS region transcription start site region 684
Gm14107 2 147642848 to 147643177 329 - pseudogene predicted gene 14107
Gm14106 2 147668015 to 147668452 437 + pseudogene predicted gene 14106
A530006G24Rik 2 147710693 to 147717632 6939 + lincRNA gene RIKEN cDNA A530006G24 gene
D2Dcr103 2 147725828 to 147725926 98 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 103
Gm25516 2 147874772 to 147874878 106 - snRNA gene predicted gene, 25516
Gm35528 2 147876888 to 147883917 7029 + lncRNA gene predicted gene, 35528
Gm35579 2 147884878 to 147900502 15624 - lncRNA gene predicted gene, 35579
Gm46769 2 147893544 to 147895549 2005 + lncRNA gene predicted gene, 46769
9030622O22Rik 2 147944740 to 148040203 95463 - lincRNA gene RIKEN cDNA 9030622O22 gene
Tssr26634 2 147977147 to 147977151 4 - TSS region transcription start site region 26634
Tssr26635 2 148009273 to 148009297 24 - TSS region transcription start site region 26635
Tssr26636 2 148022032 to 148022050 18 - TSS region transcription start site region 26636
Tssr685 2 148022052 to 148022055 3 - TSS region transcription start site region 685
Cpgi12390 2 148030471 to 148030683 212 CpG island CpG island 12390
Tssr26637 2 148034033 to 148034037 4 - TSS region transcription start site region 26637
Tssr26638 2 148038288 to 148038299 11 - TSS region transcription start site region 26638
Cpgi12391 2 148038480 to 148038920 440 CpG island CpG island 12391
Cpgi12392 2 148039314 to 148040290 976 CpG island CpG island 12392
Tssr26639 2 148040196 to 148040211 15 - TSS region transcription start site region 26639
Cpgi12393 2 148040800 to 148041037 237 CpG island CpG island 12393
Foxa2 2 148042877 to 148046969 4092 - protein coding gene forkhead box A2
Cpgi12394 2 148043600 to 148047104 3504 CpG island CpG island 12394
Tssr26640 2 148045891 to 148045905 14 - TSS region transcription start site region 26640
Tssr26641 2 148046212 to 148046241 29 - TSS region transcription start site region 26641
Tssr26642 2 148046338 to 148046343 5 - TSS region transcription start site region 26642
Tssr26643 2 148046984 to 148046991 7 - TSS region transcription start site region 26643
Tssr26644 2 148047054 to 148047085 31 - TSS region transcription start site region 26644
Cpgi12395 2 148048609 to 148049289 680 CpG island CpG island 12395
Gm27420 2 148053124 to 148053202 78 + miRNA gene predicted gene, 27420