Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:146639273-149379297

Filter by:
285 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Otx2m2 2 123390053 to 148858457 25468404 QTL orthodenticle homolog 2 modifier 2
nmf62 2 128781466 to 148620946 19839480 heritable phenotypic marker neuroscience mutagenesis facility, 62
Gm34689 2 146709704 to 146731545 21841 + lncRNA gene predicted gene, 34689
Gm14111 2 146754707 to 146755705 998 - pseudogene predicted gene 14111
Gm35433 2 146766632 to 146774283 7651 + lncRNA gene predicted gene, 35433
Gm14114 2 146828327 to 146839732 11405 - lincRNA gene predicted gene 14114
Gm35030 2 146833770 to 146836750 2980 + lncRNA gene predicted gene, 35030
Cpgi12369 2 146834273 to 146835384 1111 CpG island CpG island 12369
Tssr20611 2 146834610 to 146834650 40 + TSS region transcription start site region 20611
Cpgi12370 2 146836385 to 146836546 161 CpG island CpG island 12370
Cpgi12371 2 146837002 to 146837160 158 CpG island CpG island 12371
Gm34978 2 146837556 to 146840180 2624 + lncRNA gene predicted gene, 34978
Tssr20612 2 146838988 to 146839001 13 + TSS region transcription start site region 20612
Cpgi12372 2 146839368 to 146839743 375 CpG island CpG island 12372
Cpgi12373 2 146855643 to 146856274 631 CpG island CpG island 12373
Tssr20613 2 146855815 to 146855825 10 + TSS region transcription start site region 20613
Tssr20614 2 146855861 to 146855926 65 + TSS region transcription start site region 20614
Kiz 2 146855864 to 146970097 114233 + protein coding gene kizuna centrosomal protein
D2Dcr102 2 146857216 to 146857311 95 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 102
Gm19167 2 146882038 to 146882639 601 + pseudogene predicted gene, 19167
Gm19105 2 146884562 to 146885145 583 + pseudogene predicted gene, 19105
Tssr20615 2 146908363 to 146908367 4 + TSS region transcription start site region 20615
Tssr20616 2 146951365 to 146951371 6 + TSS region transcription start site region 20616
Cpgi12374 2 147012713 to 147013804 1091 CpG island CpG island 12374
Tssr20617 2 147012744 to 147012794 50 + TSS region transcription start site region 20617
Xrn2 2 147012996 to 147078000 65004 + protein coding gene 5'-3' exoribonuclease 2
Tssr20618 2 147013013 to 147013083 70 + TSS region transcription start site region 20618
Tssr26624 2 147013317 to 147013335 18 - TSS region transcription start site region 26624
Tssr26625 2 147013785 to 147013799 14 - TSS region transcription start site region 26625
Tssr20619 2 147013858 to 147013867 9 + TSS region transcription start site region 20619
Tssr20620 2 147013922 to 147013932 10 + TSS region transcription start site region 20620
Tssr20621 2 147014760 to 147014764 4 + TSS region transcription start site region 20621
Tssr20622 2 147029863 to 147029878 15 + TSS region transcription start site region 20622
Tssr20623 2 147046969 to 147046973 4 + TSS region transcription start site region 20623
Tssr20624 2 147072596 to 147072600 4 + TSS region transcription start site region 20624
Nkx2-4 2 147083337 to 147085439 2102 - protein coding gene NK2 homeobox 4
Cpgi12375 2 147083616 to 147085952 2336 CpG island CpG island 12375
Tssr26626 2 147085464 to 147085483 19 - TSS region transcription start site region 26626
Gm34889 2 147085506 to 147127803 42297 + lncRNA gene predicted gene, 34889
Gm14116 2 147146408 to 147147212 804 - pseudogene predicted gene 14116
Nkx2-2 2 147177546 to 147194243 16697 - protein coding gene NK2 homeobox 2
Cpgi12376 2 147178293 to 147178499 206 CpG island CpG island 12376
Cpgi12377 2 147178642 to 147179094 452 CpG island CpG island 12377
Cpgi12378 2 147180817 to 147181269 452 CpG island CpG island 12378
Cpgi12379 2 147183903 to 147184991 1088 CpG island CpG island 12379
Nkx2-2os 2 147184083 to 147331681 147598 + antisense lncRNA gene NK2 homeobox 2, opposite strand
Cpgi12380 2 147185639 to 147186500 861 CpG island CpG island 12380
Tssr26627 2 147185798 to 147185835 37 - TSS region transcription start site region 26627
Tssr26628 2 147186365 to 147186382 17 - TSS region transcription start site region 26628
Tssr26629 2 147186389 to 147186413 24 - TSS region transcription start site region 26629
Cpgi12381 2 147187395 to 147187737 342 CpG island CpG island 12381
6430503K07Rik 2 147187424 to 147188407 983 + antisense lncRNA gene RIKEN cDNA 6430503K07 gene
Cpgi12382 2 147187986 to 147188331 345 CpG island CpG island 12382
Cpgi12383 2 147190211 to 147191132 921 CpG island CpG island 12383
Cpgi12384 2 147193787 to 147195595 1808 CpG island CpG island 12384
Tssr26630 2 147194241 to 147194249 8 - TSS region transcription start site region 26630
Tssr682 2 147237389 to 147237391 2 + TSS region transcription start site region 682
Gm39955 2 147248650 to 147256877 8227 - lncRNA gene predicted gene, 39955
Gm22261 2 147250462 to 147250785 323 - unclassified non-coding RNA gene predicted gene, 22261
Tssr683 2 147275629 to 147275633 4 + TSS region transcription start site region 683
Gm14115 2 147280603 to 147281084 481 - pseudogene predicted gene 14115
Tssr26631 2 147281121 to 147281125 4 - TSS region transcription start site region 26631
Gm14113 2 147289755 to 147290730 975 + pseudogene predicted gene 14113
Gm14110 2 147323562 to 147325087 1525 - lincRNA gene predicted gene 14110
AI646519 2 147361541 to 147362793 1252 - antisense lncRNA gene expressed sequence AI646519
Cpgi12385 2 147361663 to 147361891 228 CpG island CpG island 12385
Pax1 2 147361918 to 147375049 13131 + protein coding gene paired box 1
Tssr20625 2 147361959 to 147361966 7 + TSS region transcription start site region 20625
Cpgi12386 2 147362267 to 147362610 343 CpG island CpG island 12386
Tssr26632 2 147362435 to 147362448 13 - TSS region transcription start site region 26632
Cpgi12387 2 147364580 to 147366446 1866 CpG island CpG island 12387
Tssr20626 2 147364955 to 147364962 7 + TSS region transcription start site region 20626
Tssr20627 2 147364989 to 147365011 22 + TSS region transcription start site region 20627
Tssr20628 2 147365013 to 147365033 20 + TSS region transcription start site region 20628
Tssr20629 2 147365036 to 147365047 11 + TSS region transcription start site region 20629
Tssr20630 2 147366139 to 147366159 20 + TSS region transcription start site region 20630
Cpgi12388 2 147368180 to 147368638 458 CpG island CpG island 12388
Cpgi12389 2 147373247 to 147373897 650 CpG island CpG island 12389
Tssr20631 2 147373848 to 147373863 15 + TSS region transcription start site region 20631
Tssr20632 2 147373909 to 147373919 10 + TSS region transcription start site region 20632
Tssr20633 2 147373947 to 147373955 8 + TSS region transcription start site region 20633
Tssr20634 2 147374035 to 147374048 13 + TSS region transcription start site region 20634
Tssr20635 2 147375528 to 147375529 1 + TSS region transcription start site region 20635
Gm14109 2 147402954 to 147403262 308 - pseudogene predicted gene 14109
Gm39956 2 147427956 to 147431399 3443 - lncRNA gene predicted gene, 39956
Tssr26633 2 147431403 to 147431411 8 - TSS region transcription start site region 26633
Gm35479 2 147431764 to 147480245 48481 + lncRNA gene predicted gene, 35479
Tssr20636 2 147435498 to 147435510 12 + TSS region transcription start site region 20636
Tssr20637 2 147515980 to 147515981 1 + TSS region transcription start site region 20637
Tssr684 2 147531780 to 147531782 2 + TSS region transcription start site region 684
Gm14107 2 147642848 to 147643177 329 - pseudogene predicted gene 14107
Gm14106 2 147668015 to 147668452 437 + pseudogene predicted gene 14106
A530006G24Rik 2 147710693 to 147717632 6939 + lincRNA gene RIKEN cDNA A530006G24 gene
D2Dcr103 2 147725828 to 147725926 98 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 103
Gm25516 2 147874772 to 147874878 106 - snRNA gene predicted gene, 25516
Gm35528 2 147876888 to 147883917 7029 + lncRNA gene predicted gene, 35528
Gm35579 2 147884878 to 147900502 15624 - lncRNA gene predicted gene, 35579
Gm46769 2 147893544 to 147895549 2005 + lncRNA gene predicted gene, 46769
9030622O22Rik 2 147944740 to 148040203 95463 - lincRNA gene RIKEN cDNA 9030622O22 gene
Tssr26634 2 147977147 to 147977151 4 - TSS region transcription start site region 26634
Tssr26635 2 148009273 to 148009297 24 - TSS region transcription start site region 26635
Tssr26636 2 148022032 to 148022050 18 - TSS region transcription start site region 26636
Tssr685 2 148022052 to 148022055 3 - TSS region transcription start site region 685
Cpgi12390 2 148030471 to 148030683 212 CpG island CpG island 12390
Tssr26637 2 148034033 to 148034037 4 - TSS region transcription start site region 26637
Tssr26638 2 148038288 to 148038299 11 - TSS region transcription start site region 26638
Cpgi12391 2 148038480 to 148038920 440 CpG island CpG island 12391
Cpgi12392 2 148039314 to 148040290 976 CpG island CpG island 12392
Tssr26639 2 148040196 to 148040211 15 - TSS region transcription start site region 26639
Cpgi12393 2 148040800 to 148041037 237 CpG island CpG island 12393
Foxa2 2 148042877 to 148046969 4092 - protein coding gene forkhead box A2
Cpgi12394 2 148043600 to 148047104 3504 CpG island CpG island 12394
Tssr26640 2 148045891 to 148045905 14 - TSS region transcription start site region 26640
Tssr26641 2 148046212 to 148046241 29 - TSS region transcription start site region 26641
Tssr26642 2 148046338 to 148046343 5 - TSS region transcription start site region 26642
Tssr26643 2 148046984 to 148046991 7 - TSS region transcription start site region 26643
Tssr26644 2 148047054 to 148047085 31 - TSS region transcription start site region 26644
Cpgi12395 2 148048609 to 148049289 680 CpG island CpG island 12395
Gm27420 2 148053124 to 148053202 78 + miRNA gene predicted gene, 27420
Gm14108 2 148071346 to 148071839 493 - pseudogene predicted gene 14108
Tssr20638 2 148098754 to 148098759 5 + TSS region transcription start site region 20638
Gm24221 2 148151150 to 148151462 312 + snoRNA gene predicted gene, 24221
Gm36597 2 148170607 to 148182350 11743 + lncRNA gene predicted gene, 36597
2310021N16Rik 2 148280489 to 148281156 667 unclassified gene RIKEN cDNA 2310021N16 gene
D2Mit57 2 148302385 to 148302497 112 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 57
Tssr26645 2 148349382 to 148349393 11 - TSS region transcription start site region 26645
Gm39957 2 148376330 to 148391907 15577 - lncRNA gene predicted gene, 39957
Cpgi12396 2 148394963 to 148396440 1477 CpG island CpG island 12396
Tssr20639 2 148395338 to 148395356 18 + TSS region transcription start site region 20639
Tssr20640 2 148395369 to 148395413 44 + TSS region transcription start site region 20640
Sstr4 2 148395377 to 148396764 1387 + protein coding gene somatostatin receptor 4
Tssr20641 2 148395853 to 148395882 29 + TSS region transcription start site region 20641
Tssr26646 2 148395866 to 148395894 28 - TSS region transcription start site region 26646
Tssr26647 2 148397021 to 148397036 15 - TSS region transcription start site region 26647
Tssr686 2 148397477 to 148397480 3 + TSS region transcription start site region 686
Tssr20642 2 148397488 to 148397493 5 + TSS region transcription start site region 20642
Tssr20643 2 148397529 to 148397538 9 + TSS region transcription start site region 20643
Tssr687 2 148397559 to 148397565 6 + TSS region transcription start site region 687
Tssr26648 2 148403939 to 148403942 3 - TSS region transcription start site region 26648
Thbd 2 148404471 to 148408188 3717 - protein coding gene thrombomodulin
Tssr26649 2 148405504 to 148405507 3 - TSS region transcription start site region 26649
Cpgi12397 2 148406115 to 148408460 2345 CpG island CpG island 12397
Tssr26650 2 148408106 to 148408127 21 - TSS region transcription start site region 26650
Tssr26651 2 148408146 to 148408155 9 - TSS region transcription start site region 26651
D2Mit1006 2 148409245 to 148409452 207 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 1006
Gm14119 2 148419032 to 148419266 234 - pseudogene predicted gene 14119
4833411I10Rik 2 148428221 to 148431014 2793 unclassified gene RIKEN cDNA 4833411I10 gene
Tssr26652 2 148436074 to 148436096 22 - TSS region transcription start site region 26652
Cd93 2 148436651 to 148443535 6884 - protein coding gene CD93 antigen
Tssr26653 2 148437023 to 148437070 47 - TSS region transcription start site region 26653
Tssr26654 2 148437204 to 148437218 14 - TSS region transcription start site region 26654
Tssr26655 2 148438256 to 148438275 19 - TSS region transcription start site region 26655
Tssr26656 2 148438396 to 148438414 18 - TSS region transcription start site region 26656
Tssr26657 2 148438440 to 148438453 13 - TSS region transcription start site region 26657
Tssr26658 2 148439800 to 148439814 14 - TSS region transcription start site region 26658
Tssr26659 2 148439880 to 148439900 20 - TSS region transcription start site region 26659
Tssr20644 2 148440151 to 148440153 2 + TSS region transcription start site region 20644
Tssr26660 2 148440893 to 148440914 21 - TSS region transcription start site region 26660
Tssr26661 2 148441771 to 148441829 58 - TSS region transcription start site region 26661
Cpgi12398 2 148442440 to 148442621 181 CpG island CpG island 12398
Tssr26662 2 148443429 to 148443444 15 - TSS region transcription start site region 26662
Tssr26663 2 148443509 to 148443520 11 - TSS region transcription start site region 26663
Tssr26664 2 148443530 to 148443542 12 - TSS region transcription start site region 26664
Tssr26665 2 148443543 to 148443582 39 - TSS region transcription start site region 26665
Tssr26666 2 148443624 to 148443626 2 - TSS region transcription start site region 26666
D2Mit519 2 148456561 to 148456679 118 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology-519
Gm14120 2 148468890 to 148478780 9890 + lincRNA gene predicted gene 14120
Tssr20645 2 148499986 to 148499990 4 + TSS region transcription start site region 20645
Gm46770 2 148520638 to 148562141 41503 - lncRNA gene predicted gene, 46770
Tssr688 2 148522374 to 148522375 1 + TSS region transcription start site region 688
Tssr20646 2 148522557 to 148522586 29 + TSS region transcription start site region 20646
D2Mit281 2 148532866 to 148533014 148 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 281
T2dm2sa 2 148533014 to 29417935 -119115079 QTL type 2 diabetes mellitus 2 in SMXA RI mice
D2Mit407 2 148620831 to 148620946 115 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 407
Gm25866 2 148624711 to 148624822 111 + snoRNA gene predicted gene, 25866
Cpgi12399 2 148672381 to 148673068 687 CpG island CpG island 12399
Nxt1 2 148672615 to 148676026 3411 + protein coding gene NTF2-related export protein 1
Tssr20647 2 148672634 to 148672722 88 + TSS region transcription start site region 20647
Cpgi12400 2 148677759 to 148678170 411 CpG island CpG island 12400
D2Mit405 2 148680172 to 148680255 83 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 405
Plast2b 2 148680255 to 84182854 -64497401 QTL plasma plant sterol 2b
Gm46771 2 148680278 to 148680915 637 - lncRNA gene predicted gene, 46771
Cpgi12401 2 148680747 to 148681713 966 CpG island CpG island 12401
Gzf1 2 148681023 to 148692949 11926 + protein coding gene GDNF-inducible zinc finger protein 1
Tssr20648 2 148681134 to 148681150 16 + TSS region transcription start site region 20648
Tssr20649 2 148681154 to 148681197 43 + TSS region transcription start site region 20649
Tssr20650 2 148681199 to 148681218 19 + TSS region transcription start site region 20650
Napb 2 148693985 to 148732420 38435 - protein coding gene N-ethylmaleimide sensitive fusion protein attachment protein beta
D2Mit47.2 2 148696595 to 148696714 119 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 47.2
D2Mit47 2 148696671 to 148696828 157 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 47
D2Mit47.1 2 148696787 to 148696903 116 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 47.1
Tssr26667 2 148696996 to 148697007 11 - TSS region transcription start site region 26667
Tssr26668 2 148701172 to 148701183 11 - TSS region transcription start site region 26668
Tssr26669 2 148701205 to 148701216 11 - TSS region transcription start site region 26669
Tssr20651 2 148713740 to 148713747 7 + TSS region transcription start site region 20651
Cpgi12402 2 148731590 to 148732602 1012 CpG island CpG island 12402
Tssr26670 2 148732368 to 148732372 4 - TSS region transcription start site region 26670
Tssr26671 2 148732378 to 148732455 77 - TSS region transcription start site region 26671
Tssr26672 2 148732457 to 148732463 6 - TSS region transcription start site region 26672
Tssr20652 2 148750352 to 148750376 24 + TSS region transcription start site region 20652