Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:146416385-147256546

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64 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ralgapa2 2 146239876 to 146512318 272442 - protein coding gene Ral GTPase activating protein, alpha subunit 2 (catalytic)
V25Dq3 2 146500000 to 146500000 0 QTL vitamin D inactive form serum level QTL 3
Cpgi12368 2 146511371 to 146512456 1085 CpG island CpG island 12368
Tssr26621 2 146511946 to 146511979 33 - TSS region transcription start site region 26621
Tssr26622 2 146511992 to 146512015 23 - TSS region transcription start site region 26622
Tssr26623 2 146512026 to 146512083 57 - TSS region transcription start site region 26623
4933406D12Rik 2 146542931 to 146546108 3177 + lincRNA gene RIKEN cDNA 4933406D12 gene
Gm34689 2 146709704 to 146731545 21841 + lncRNA gene predicted gene, 34689
Gm14111 2 146754707 to 146755705 998 - pseudogene predicted gene 14111
Gm35433 2 146766632 to 146774283 7651 + lncRNA gene predicted gene, 35433
Gm14114 2 146828327 to 146839732 11405 - lincRNA gene predicted gene 14114
Gm35030 2 146833770 to 146836750 2980 + lncRNA gene predicted gene, 35030
Cpgi12369 2 146834273 to 146835384 1111 CpG island CpG island 12369
Tssr20611 2 146834610 to 146834650 40 + TSS region transcription start site region 20611
Cpgi12370 2 146836385 to 146836546 161 CpG island CpG island 12370
Cpgi12371 2 146837002 to 146837160 158 CpG island CpG island 12371
Gm34978 2 146837556 to 146840180 2624 + lncRNA gene predicted gene, 34978
Tssr20612 2 146838988 to 146839001 13 + TSS region transcription start site region 20612
Cpgi12372 2 146839368 to 146839743 375 CpG island CpG island 12372
Cpgi12373 2 146855643 to 146856274 631 CpG island CpG island 12373
Tssr20613 2 146855815 to 146855825 10 + TSS region transcription start site region 20613
Tssr20614 2 146855861 to 146855926 65 + TSS region transcription start site region 20614
Kiz 2 146855864 to 146970097 114233 + protein coding gene kizuna centrosomal protein
D2Dcr102 2 146857216 to 146857311 95 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 102
Gm19167 2 146882038 to 146882639 601 + pseudogene predicted gene, 19167
Gm19105 2 146884562 to 146885145 583 + pseudogene predicted gene, 19105
Tssr20615 2 146908363 to 146908367 4 + TSS region transcription start site region 20615
Tssr20616 2 146951365 to 146951371 6 + TSS region transcription start site region 20616
Cpgi12374 2 147012713 to 147013804 1091 CpG island CpG island 12374
Tssr20617 2 147012744 to 147012794 50 + TSS region transcription start site region 20617
Xrn2 2 147012996 to 147078000 65004 + protein coding gene 5'-3' exoribonuclease 2
Tssr20618 2 147013013 to 147013083 70 + TSS region transcription start site region 20618
Tssr26624 2 147013317 to 147013335 18 - TSS region transcription start site region 26624
Tssr26625 2 147013785 to 147013799 14 - TSS region transcription start site region 26625
Tssr20619 2 147013858 to 147013867 9 + TSS region transcription start site region 20619
Tssr20620 2 147013922 to 147013932 10 + TSS region transcription start site region 20620
Tssr20621 2 147014760 to 147014764 4 + TSS region transcription start site region 20621
Tssr20622 2 147029863 to 147029878 15 + TSS region transcription start site region 20622
Tssr20623 2 147046969 to 147046973 4 + TSS region transcription start site region 20623
Tssr20624 2 147072596 to 147072600 4 + TSS region transcription start site region 20624
Nkx2-4 2 147083337 to 147085439 2102 - protein coding gene NK2 homeobox 4
Cpgi12375 2 147083616 to 147085952 2336 CpG island CpG island 12375
Tssr26626 2 147085464 to 147085483 19 - TSS region transcription start site region 26626
Gm34889 2 147085506 to 147127803 42297 + lncRNA gene predicted gene, 34889
Gm14116 2 147146408 to 147147212 804 - pseudogene predicted gene 14116
Nkx2-2 2 147177546 to 147194243 16697 - protein coding gene NK2 homeobox 2
Cpgi12376 2 147178293 to 147178499 206 CpG island CpG island 12376
Cpgi12377 2 147178642 to 147179094 452 CpG island CpG island 12377
Cpgi12378 2 147180817 to 147181269 452 CpG island CpG island 12378
Cpgi12379 2 147183903 to 147184991 1088 CpG island CpG island 12379
Nkx2-2os 2 147184083 to 147331681 147598 + antisense lncRNA gene NK2 homeobox 2, opposite strand
Cpgi12380 2 147185639 to 147186500 861 CpG island CpG island 12380
Tssr26627 2 147185798 to 147185835 37 - TSS region transcription start site region 26627
Tssr26628 2 147186365 to 147186382 17 - TSS region transcription start site region 26628
Tssr26629 2 147186389 to 147186413 24 - TSS region transcription start site region 26629
Cpgi12381 2 147187395 to 147187737 342 CpG island CpG island 12381
6430503K07Rik 2 147187424 to 147188407 983 + antisense lncRNA gene RIKEN cDNA 6430503K07 gene
Cpgi12382 2 147187986 to 147188331 345 CpG island CpG island 12382
Cpgi12383 2 147190211 to 147191132 921 CpG island CpG island 12383
Cpgi12384 2 147193787 to 147195595 1808 CpG island CpG island 12384
Tssr26630 2 147194241 to 147194249 8 - TSS region transcription start site region 26630
Tssr682 2 147237389 to 147237391 2 + TSS region transcription start site region 682
Gm39955 2 147248650 to 147256877 8227 - lncRNA gene predicted gene, 39955
Gm22261 2 147250462 to 147250785 323 - unclassified non-coding RNA gene predicted gene, 22261