Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:145140037-147401733

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192 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nktcn2 2 138895496 to 146052033 7156537 QTL natural killer T cell numbers 2
Ssrq1 2 142217381 to 146052033 3834652 QTL stress response QTL 1
D2Ertd397e 2 145147358 to 145147567 209 DNA segment DNA segment, Chr 2, ERATO Doi 397, expressed
Cpgi12361 2 145166859 to 145168735 1876 CpG island CpG island 12361
Tssr20554 2 145167505 to 145167520 15 + TSS region transcription start site region 20554
Tssr20555 2 145167706 to 145167773 67 + TSS region transcription start site region 20555
Slc24a3 2 145167754 to 145642166 474412 + protein coding gene solute carrier family 24 (sodium/potassium/calcium exchanger), member 3
Tssr20556 2 145167846 to 145167900 54 + TSS region transcription start site region 20556
Tssr20557 2 145167904 to 145167982 78 + TSS region transcription start site region 20557
Tssr20558 2 145186409 to 145186414 5 + TSS region transcription start site region 20558
Gm14093 2 145337648 to 145379381 41733 + sense intronic lncRNA gene predicted gene 14093
Gm22731 2 145352843 to 145352936 93 + rRNA gene predicted gene, 22731
D2Ertd105e 2 145382985 to 145383184 199 DNA segment DNA segment, Chr 2, ERATO Doi 105, expressed
Tssr20559 2 145460241 to 145460246 5 + TSS region transcription start site region 20559
D2Dcr100 2 145470549 to 145470672 123 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 100
D2Mit109 2 145470552 to 145470727 175 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 109
Lith1 2 145470727 to 45457623 -100013104 QTL lithogenic gene 1
Gm22390 2 145481407 to 145481731 324 - unclassified non-coding RNA gene predicted gene, 22390
Gm11759 2 145510194 to 145510657 463 - pseudogene predicted gene 11759
Gm14092 2 145550652 to 145554982 4330 - antisense lncRNA gene predicted gene 14092
Gm19115 2 145567050 to 145567701 651 + pseudogene predicted gene, 19115
Cpgi12362 2 145674845 to 145676162 1317 CpG island CpG island 12362
Tssr20560 2 145675342 to 145675358 16 + TSS region transcription start site region 20560
Tssr20561 2 145675470 to 145675493 23 + TSS region transcription start site region 20561
Tssr20562 2 145675506 to 145675527 21 + TSS region transcription start site region 20562
BC039771 2 145701195 to 145753672 52477 + lncRNA gene cDNA sequence BC039771
Gm11763 2 145701414 to 145701725 311 - pseudogene predicted gene 11763
Tssr681 2 145707270 to 145707272 2 + TSS region transcription start site region 681
Gm34570 2 145711215 to 145712448 1233 - lncRNA gene predicted gene, 34570
Gm34513 2 145713298 to 145725398 12100 - lncRNA gene predicted gene, 34513
Tssr20563 2 145731060 to 145731064 4 + TSS region transcription start site region 20563
Rin2 2 145771727 to 145887616 115889 + protein coding gene Ras and Rab interactor 2
Tssr20564 2 145786122 to 145786152 30 + TSS region transcription start site region 20564
Tssr20565 2 145786260 to 145786274 14 + TSS region transcription start site region 20565
Tssr20566 2 145786279 to 145786307 28 + TSS region transcription start site region 20566
Tssr20567 2 145786324 to 145786335 11 + TSS region transcription start site region 20567
Tssr20568 2 145820002 to 145820005 3 + TSS region transcription start site region 20568
Tssr20569 2 145822142 to 145822157 15 + TSS region transcription start site region 20569
Tssr20570 2 145822185 to 145822196 11 + TSS region transcription start site region 20570
Tssr20571 2 145822253 to 145822303 50 + TSS region transcription start site region 20571
Tssr20572 2 145822550 to 145822612 62 + TSS region transcription start site region 20572
Tssr20573 2 145830886 to 145830900 14 + TSS region transcription start site region 20573
Tssr20574 2 145851026 to 145851040 14 + TSS region transcription start site region 20574
Tssr20575 2 145851119 to 145851124 5 + TSS region transcription start site region 20575
Tssr20576 2 145858440 to 145858463 23 + TSS region transcription start site region 20576
Tssr20577 2 145860034 to 145860057 23 + TSS region transcription start site region 20577
Tssr20578 2 145860141 to 145860156 15 + TSS region transcription start site region 20578
Tssr20579 2 145860161 to 145860175 14 + TSS region transcription start site region 20579
Tssr20580 2 145860232 to 145860246 14 + TSS region transcription start site region 20580
Cpgi12363 2 145860233 to 145861020 787 CpG island CpG island 12363
Tssr20581 2 145860353 to 145860368 15 + TSS region transcription start site region 20581
Tssr20582 2 145860485 to 145860521 36 + TSS region transcription start site region 20582
Tssr20583 2 145860653 to 145860699 46 + TSS region transcription start site region 20583
Tssr20584 2 145860702 to 145860725 23 + TSS region transcription start site region 20584
Tssr20585 2 145860734 to 145860747 13 + TSS region transcription start site region 20585
Tssr20586 2 145860760 to 145860763 3 + TSS region transcription start site region 20586
Tssr20587 2 145860879 to 145860886 7 + TSS region transcription start site region 20587
Tssr20588 2 145860891 to 145860904 13 + TSS region transcription start site region 20588
Tssr20589 2 145860916 to 145860925 9 + TSS region transcription start site region 20589
Tssr20590 2 145872476 to 145872501 25 + TSS region transcription start site region 20590
Gm25026 2 145878286 to 145878473 187 + miRNA gene predicted gene, 25026
Tssr20591 2 145878827 to 145878839 12 + TSS region transcription start site region 20591
Tssr20592 2 145878871 to 145878878 7 + TSS region transcription start site region 20592
D2Dcr101 2 145879448 to 145879561 113 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 101
Gm39954 2 145880114 to 145894181 14067 - lncRNA gene predicted gene, 39954
Tssr26615 2 145884905 to 145884914 9 - TSS region transcription start site region 26615
Tssr20593 2 145886340 to 145886358 18 + TSS region transcription start site region 20593
Tssr20594 2 145886402 to 145886420 18 + TSS region transcription start site region 20594
Tssr20595 2 145886643 to 145886654 11 + TSS region transcription start site region 20595
Tssr20596 2 145886876 to 145886899 23 + TSS region transcription start site region 20596
Tssr20597 2 145886900 to 145886921 21 + TSS region transcription start site region 20597
Tssr20598 2 145886930 to 145886941 11 + TSS region transcription start site region 20598
Tssr20599 2 145887017 to 145887030 13 + TSS region transcription start site region 20599
Gm11764 2 145892091 to 145892704 613 + pseudogene predicted gene 11764
Naa20 2 145902099 to 145916425 14326 + protein coding gene N(alpha)-acetyltransferase 20, NatB catalytic subunit
Cpgi12364 2 145903030 to 145903657 627 CpG island CpG island 12364
Tssr20600 2 145903222 to 145903227 5 + TSS region transcription start site region 20600
Tssr20601 2 145903234 to 145903300 66 + TSS region transcription start site region 20601
Tssr20602 2 145903890 to 145903903 13 + TSS region transcription start site region 20602
Crnkl1 2 145917482 to 145934700 17218 - protein coding gene crooked neck pre-mRNA splicing factor 1
Cpgi12365 2 145934266 to 145935054 788 CpG island CpG island 12365
Tssr26616 2 145934682 to 145934738 56 - TSS region transcription start site region 26616
Tssr20603 2 145934776 to 145934797 21 + TSS region transcription start site region 20603
Cfap61 2 145934784 to 145964226 29442 + protein coding gene cilia and flagella associated protein 61
Tssr20604 2 145934800 to 145934813 13 + TSS region transcription start site region 20604
Tssr20605 2 146047198 to 146047242 44 + TSS region transcription start site region 20605
D2Mit280 2 146051834 to 146052033 199 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 280
Gm34629 2 146095018 to 146099616 4598 - lncRNA gene predicted gene, 34629
Tssr26617 2 146099202 to 146099221 19 - TSS region transcription start site region 26617
Tssr20606 2 146101647 to 146101654 7 + TSS region transcription start site region 20606
Tssr20607 2 146101674 to 146101679 5 + TSS region transcription start site region 20607
Tssr26618 2 146198025 to 146198036 11 - TSS region transcription start site region 26618
Tssr26619 2 146198044 to 146198057 13 - TSS region transcription start site region 26619
Tssr20608 2 146200651 to 146200660 9 + TSS region transcription start site region 20608
Tssr20609 2 146200678 to 146200724 46 + TSS region transcription start site region 20609
Cpgi12366 2 146218156 to 146218803 647 CpG island CpG island 12366
Cpgi12367 2 146220676 to 146223989 3313 CpG island CpG island 12367
Insm1 2 146221997 to 146225020 3023 + protein coding gene insulinoma-associated 1
Tssr20610 2 146222093 to 146222111 18 + TSS region transcription start site region 20610
Ralgapa2 2 146239876 to 146512318 272442 - protein coding gene Ral GTPase activating protein, alpha subunit 2 (catalytic)
A930019D19Rik 2 146259286 to 146267160 7874 + antisense lncRNA gene RIKEN cDNA A930019D19 gene
Tssr26620 2 146261368 to 146261387 19 - TSS region transcription start site region 26620
B130033B12Rik 2 146270037 to 146271733 1696 unclassified gene RIKEN cDNA B130033B12 gene
Gm14117 2 146305547 to 146306386 839 + pseudogene predicted gene 14117
9630019E01Rik 2 146401616 to 146403853 2237 unclassified gene RIKEN cDNA 9630019E01 gene
V25Dq3 2 146500000 to 146500000 0 QTL vitamin D inactive form serum level QTL 3
Cpgi12368 2 146511371 to 146512456 1085 CpG island CpG island 12368
Tssr26621 2 146511946 to 146511979 33 - TSS region transcription start site region 26621
Tssr26622 2 146511992 to 146512015 23 - TSS region transcription start site region 26622
Tssr26623 2 146512026 to 146512083 57 - TSS region transcription start site region 26623
4933406D12Rik 2 146542931 to 146546108 3177 + lincRNA gene RIKEN cDNA 4933406D12 gene
Gm34689 2 146709704 to 146731545 21841 + lncRNA gene predicted gene, 34689
Gm14111 2 146754707 to 146755705 998 - pseudogene predicted gene 14111
Gm35433 2 146766632 to 146774283 7651 + lncRNA gene predicted gene, 35433
Gm14114 2 146828327 to 146839732 11405 - lincRNA gene predicted gene 14114
Gm35030 2 146833770 to 146836750 2980 + lncRNA gene predicted gene, 35030
Cpgi12369 2 146834273 to 146835384 1111 CpG island CpG island 12369
Tssr20611 2 146834610 to 146834650 40 + TSS region transcription start site region 20611
Cpgi12370 2 146836385 to 146836546 161 CpG island CpG island 12370
Cpgi12371 2 146837002 to 146837160 158 CpG island CpG island 12371
Gm34978 2 146837556 to 146840180 2624 + lncRNA gene predicted gene, 34978
Tssr20612 2 146838988 to 146839001 13 + TSS region transcription start site region 20612
Cpgi12372 2 146839368 to 146839743 375 CpG island CpG island 12372
Cpgi12373 2 146855643 to 146856274 631 CpG island CpG island 12373
Tssr20613 2 146855815 to 146855825 10 + TSS region transcription start site region 20613
Tssr20614 2 146855861 to 146855926 65 + TSS region transcription start site region 20614
Kiz 2 146855864 to 146970097 114233 + protein coding gene kizuna centrosomal protein
D2Dcr102 2 146857216 to 146857311 95 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 102
Gm19167 2 146882038 to 146882639 601 + pseudogene predicted gene, 19167
Gm19105 2 146884562 to 146885145 583 + pseudogene predicted gene, 19105
Tssr20615 2 146908363 to 146908367 4 + TSS region transcription start site region 20615
Tssr20616 2 146951365 to 146951371 6 + TSS region transcription start site region 20616
Cpgi12374 2 147012713 to 147013804 1091 CpG island CpG island 12374
Tssr20617 2 147012744 to 147012794 50 + TSS region transcription start site region 20617
Xrn2 2 147012996 to 147078000 65004 + protein coding gene 5'-3' exoribonuclease 2
Tssr20618 2 147013013 to 147013083 70 + TSS region transcription start site region 20618
Tssr26624 2 147013317 to 147013335 18 - TSS region transcription start site region 26624
Tssr26625 2 147013785 to 147013799 14 - TSS region transcription start site region 26625
Tssr20619 2 147013858 to 147013867 9 + TSS region transcription start site region 20619
Tssr20620 2 147013922 to 147013932 10 + TSS region transcription start site region 20620
Tssr20621 2 147014760 to 147014764 4 + TSS region transcription start site region 20621
Tssr20622 2 147029863 to 147029878 15 + TSS region transcription start site region 20622
Tssr20623 2 147046969 to 147046973 4 + TSS region transcription start site region 20623
Tssr20624 2 147072596 to 147072600 4 + TSS region transcription start site region 20624
Nkx2-4 2 147083337 to 147085439 2102 - protein coding gene NK2 homeobox 4
Cpgi12375 2 147083616 to 147085952 2336 CpG island CpG island 12375
Tssr26626 2 147085464 to 147085483 19 - TSS region transcription start site region 26626
Gm34889 2 147085506 to 147127803 42297 + lncRNA gene predicted gene, 34889
Gm14116 2 147146408 to 147147212 804 - pseudogene predicted gene 14116
Nkx2-2 2 147177546 to 147194243 16697 - protein coding gene NK2 homeobox 2
Cpgi12376 2 147178293 to 147178499 206 CpG island CpG island 12376
Cpgi12377 2 147178642 to 147179094 452 CpG island CpG island 12377
Cpgi12378 2 147180817 to 147181269 452 CpG island CpG island 12378
Cpgi12379 2 147183903 to 147184991 1088 CpG island CpG island 12379
Nkx2-2os 2 147184083 to 147331681 147598 + antisense lncRNA gene NK2 homeobox 2, opposite strand
Cpgi12380 2 147185639 to 147186500 861 CpG island CpG island 12380
Tssr26627 2 147185798 to 147185835 37 - TSS region transcription start site region 26627
Tssr26628 2 147186365 to 147186382 17 - TSS region transcription start site region 26628
Tssr26629 2 147186389 to 147186413 24 - TSS region transcription start site region 26629
Cpgi12381 2 147187395 to 147187737 342 CpG island CpG island 12381
6430503K07Rik 2 147187424 to 147188407 983 + antisense lncRNA gene RIKEN cDNA 6430503K07 gene
Cpgi12382 2 147187986 to 147188331 345 CpG island CpG island 12382
Cpgi12383 2 147190211 to 147191132 921 CpG island CpG island 12383
Cpgi12384 2 147193787 to 147195595 1808 CpG island CpG island 12384
Tssr26630 2 147194241 to 147194249 8 - TSS region transcription start site region 26630
Tssr682 2 147237389 to 147237391 2 + TSS region transcription start site region 682
Gm39955 2 147248650 to 147256877 8227 - lncRNA gene predicted gene, 39955
Gm22261 2 147250462 to 147250785 323 - unclassified non-coding RNA gene predicted gene, 22261
Tssr683 2 147275629 to 147275633 4 + TSS region transcription start site region 683
Gm14115 2 147280603 to 147281084 481 - pseudogene predicted gene 14115
Tssr26631 2 147281121 to 147281125 4 - TSS region transcription start site region 26631
Gm14113 2 147289755 to 147290730 975 + pseudogene predicted gene 14113
Gm14110 2 147323562 to 147325087 1525 - lincRNA gene predicted gene 14110
AI646519 2 147361541 to 147362793 1252 - antisense lncRNA gene expressed sequence AI646519
Cpgi12385 2 147361663 to 147361891 228 CpG island CpG island 12385
Pax1 2 147361918 to 147375049 13131 + protein coding gene paired box 1
Tssr20625 2 147361959 to 147361966 7 + TSS region transcription start site region 20625
Cpgi12386 2 147362267 to 147362610 343 CpG island CpG island 12386
Tssr26632 2 147362435 to 147362448 13 - TSS region transcription start site region 26632
Cpgi12387 2 147364580 to 147366446 1866 CpG island CpG island 12387
Tssr20626 2 147364955 to 147364962 7 + TSS region transcription start site region 20626
Tssr20627 2 147364989 to 147365011 22 + TSS region transcription start site region 20627
Tssr20628 2 147365013 to 147365033 20 + TSS region transcription start site region 20628
Tssr20629 2 147365036 to 147365047 11 + TSS region transcription start site region 20629
Tssr20630 2 147366139 to 147366159 20 + TSS region transcription start site region 20630
Cpgi12388 2 147368180 to 147368638 458 CpG island CpG island 12388
Cpgi12389 2 147373247 to 147373897 650 CpG island CpG island 12389
Tssr20631 2 147373848 to 147373863 15 + TSS region transcription start site region 20631
Tssr20632 2 147373909 to 147373919 10 + TSS region transcription start site region 20632
Tssr20633 2 147373947 to 147373955 8 + TSS region transcription start site region 20633
Tssr20634 2 147374035 to 147374048 13 + TSS region transcription start site region 20634
Tssr20635 2 147375528 to 147375529 1 + TSS region transcription start site region 20635