Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:144547846-145787900

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75 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rbbp9 2 144542265 to 144550859 8594 - protein coding gene retinoblastoma binding protein 9, serine hydrolase
Cpgi12357 2 144550534 to 144550811 277 CpG island CpG island 12357
Tssr26612 2 144550777 to 144550864 87 - TSS region transcription start site region 26612
Gm34292 2 144555693 to 144564773 9080 - lncRNA gene predicted gene, 34292
Cpgi12358 2 144555742 to 144556646 904 CpG island CpG island 12358
Sec23b 2 144556229 to 144590749 34520 + protein coding gene SEC23 homolog B, COPII coat complex component
Tssr20543 2 144556235 to 144556298 63 + TSS region transcription start site region 20543
Tssr20544 2 144556306 to 144556323 17 + TSS region transcription start site region 20544
Cpgi12359 2 144593959 to 144594538 579 CpG island CpG island 12359
Tssr20545 2 144594056 to 144594083 27 + TSS region transcription start site region 20545
Smim26 2 144594065 to 144595365 1300 + protein coding gene small integral membrane protein 26
Cpgi12360 2 144599777 to 144600460 683 CpG island CpG island 12360
Tssr20546 2 144599946 to 144600039 93 + TSS region transcription start site region 20546
Dtd1 2 144599953 to 144768747 168794 + protein coding gene D-tyrosyl-tRNA deacylase 1
Gm24823 2 144618143 to 144618233 90 - miRNA gene predicted gene, 24823
Lore2 2 144673941 to 181254801 36580860 QTL loss of righting induced by ethanol 2
D2Mit403 2 144673941 to 144674063 122 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 403
D2Mit403.1 2 144674034 to 144674188 154 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 403.1
Tssr20547 2 144697331 to 144697333 2 + TSS region transcription start site region 20547
Tssr680 2 144698217 to 144698226 9 + TSS region transcription start site region 680
Tssr20548 2 144698241 to 144698256 15 + TSS region transcription start site region 20548
Tssr26613 2 144714558 to 144714562 4 - TSS region transcription start site region 26613
Tssr20549 2 144714783 to 144714794 11 + TSS region transcription start site region 20549
Tssr20550 2 144714845 to 144714859 14 + TSS region transcription start site region 20550
Tssr26614 2 144720600 to 144720607 7 - TSS region transcription start site region 26614
Tssr20551 2 144738410 to 144738430 20 + TSS region transcription start site region 20551
Tssr20552 2 144740025 to 144740034 9 + TSS region transcription start site region 20552
Tssr20553 2 144746621 to 144746626 5 + TSS region transcription start site region 20553
Gm11743 2 144756408 to 144758612 2204 + pseudogene predicted gene 11743
Gm39951 2 144770843 to 144796107 25264 + lncRNA gene predicted gene, 39951
Bdln3 2 144822099 to 144822198 99 QTL body length 3
D2Mit168 2 144822099 to 144822198 99 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 168
Bwq5 2 144822099 to 144822198 99 QTL body weight, QTL 5
D2Dcr98 2 144822101 to 144822204 103 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 98
D2Mit168.2 2 144822197 to 144822326 129 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 168.2
Scp2d1 2 144823666 to 144824415 749 + protein coding gene SCP2 sterol-binding domain containing 1
Gm39952 2 144828809 to 144920588 91779 + lncRNA gene predicted gene, 39952
Gm11746 2 144930858 to 144931678 820 - pseudogene predicted gene 11746
D2Dcr99 2 144982437 to 144982535 98 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 99
D2Mit404.1 2 145040759 to 145040895 136 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 404.1
D2Mit404 2 145040900 to 145041098 198 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 404
D2Ertd397e 2 145147358 to 145147567 209 DNA segment DNA segment, Chr 2, ERATO Doi 397, expressed
Cpgi12361 2 145166859 to 145168735 1876 CpG island CpG island 12361
Tssr20554 2 145167505 to 145167520 15 + TSS region transcription start site region 20554
Tssr20555 2 145167706 to 145167773 67 + TSS region transcription start site region 20555
Slc24a3 2 145167754 to 145642166 474412 + protein coding gene solute carrier family 24 (sodium/potassium/calcium exchanger), member 3
Tssr20556 2 145167846 to 145167900 54 + TSS region transcription start site region 20556
Tssr20557 2 145167904 to 145167982 78 + TSS region transcription start site region 20557
Tssr20558 2 145186409 to 145186414 5 + TSS region transcription start site region 20558
Gm14093 2 145337648 to 145379381 41733 + sense intronic lncRNA gene predicted gene 14093
Gm22731 2 145352843 to 145352936 93 + rRNA gene predicted gene, 22731
D2Ertd105e 2 145382985 to 145383184 199 DNA segment DNA segment, Chr 2, ERATO Doi 105, expressed
Tssr20559 2 145460241 to 145460246 5 + TSS region transcription start site region 20559
D2Dcr100 2 145470549 to 145470672 123 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 100
D2Mit109 2 145470552 to 145470727 175 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 109
Lith1 2 145470727 to 45457623 -100013104 QTL lithogenic gene 1
Gm22390 2 145481407 to 145481731 324 - unclassified non-coding RNA gene predicted gene, 22390
Gm11759 2 145510194 to 145510657 463 - pseudogene predicted gene 11759
Gm14092 2 145550652 to 145554982 4330 - antisense lncRNA gene predicted gene 14092
Gm19115 2 145567050 to 145567701 651 + pseudogene predicted gene, 19115
Cpgi12362 2 145674845 to 145676162 1317 CpG island CpG island 12362
Tssr20560 2 145675342 to 145675358 16 + TSS region transcription start site region 20560
Tssr20561 2 145675470 to 145675493 23 + TSS region transcription start site region 20561
Tssr20562 2 145675506 to 145675527 21 + TSS region transcription start site region 20562
BC039771 2 145701195 to 145753672 52477 + lncRNA gene cDNA sequence BC039771
Gm11763 2 145701414 to 145701725 311 - pseudogene predicted gene 11763
Tssr681 2 145707270 to 145707272 2 + TSS region transcription start site region 681
Gm34570 2 145711215 to 145712448 1233 - lncRNA gene predicted gene, 34570
Gm34513 2 145713298 to 145725398 12100 - lncRNA gene predicted gene, 34513
Tssr20563 2 145731060 to 145731064 4 + TSS region transcription start site region 20563
Rin2 2 145771727 to 145887616 115889 + protein coding gene Ras and Rab interactor 2
Tssr20564 2 145786122 to 145786152 30 + TSS region transcription start site region 20564
Tssr20565 2 145786260 to 145786274 14 + TSS region transcription start site region 20565
Tssr20566 2 145786279 to 145786307 28 + TSS region transcription start site region 20566
Tssr20567 2 145786324 to 145786335 11 + TSS region transcription start site region 20567