Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:144490652-146614982

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163 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nktcn2 2 138895496 to 146052033 7156537 QTL natural killer T cell numbers 2
Ssrq1 2 142217381 to 146052033 3834652 QTL stress response QTL 1
Dzank1 2 144470557 to 144527414 56857 - protein coding gene double zinc ribbon and ankyrin repeat domains 1
Cpgi12356 2 144527102 to 144528111 1009 CpG island CpG island 12356
Tssr26607 2 144527341 to 144527424 83 - TSS region transcription start site region 26607
Tssr26608 2 144527425 to 144527432 7 - TSS region transcription start site region 26608
Tssr26609 2 144527439 to 144527450 11 - TSS region transcription start site region 26609
Tssr26610 2 144527501 to 144527512 11 - TSS region transcription start site region 26610
Tssr20540 2 144527515 to 144527527 12 + TSS region transcription start site region 20540
Tssr26611 2 144527526 to 144527537 11 - TSS region transcription start site region 26611
Tssr20541 2 144527738 to 144527773 35 + TSS region transcription start site region 20541
Polr3f 2 144527745 to 144541779 14034 + protein coding gene polymerase (RNA) III (DNA directed) polypeptide F
Tssr20542 2 144527791 to 144527802 11 + TSS region transcription start site region 20542
Rbbp9 2 144542265 to 144550859 8594 - protein coding gene retinoblastoma binding protein 9, serine hydrolase
Cpgi12357 2 144550534 to 144550811 277 CpG island CpG island 12357
Tssr26612 2 144550777 to 144550864 87 - TSS region transcription start site region 26612
Gm34292 2 144555693 to 144564773 9080 - lncRNA gene predicted gene, 34292
Cpgi12358 2 144555742 to 144556646 904 CpG island CpG island 12358
Sec23b 2 144556229 to 144590749 34520 + protein coding gene SEC23 homolog B, COPII coat complex component
Tssr20543 2 144556235 to 144556298 63 + TSS region transcription start site region 20543
Tssr20544 2 144556306 to 144556323 17 + TSS region transcription start site region 20544
Cpgi12359 2 144593959 to 144594538 579 CpG island CpG island 12359
Tssr20545 2 144594056 to 144594083 27 + TSS region transcription start site region 20545
Smim26 2 144594065 to 144595365 1300 + protein coding gene small integral membrane protein 26
Cpgi12360 2 144599777 to 144600460 683 CpG island CpG island 12360
Tssr20546 2 144599946 to 144600039 93 + TSS region transcription start site region 20546
Dtd1 2 144599953 to 144768747 168794 + protein coding gene D-tyrosyl-tRNA deacylase 1
Gm24823 2 144618143 to 144618233 90 - miRNA gene predicted gene, 24823
D2Mit403 2 144673941 to 144674063 122 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 403
Lore2 2 144673941 to 181254801 36580860 QTL loss of righting induced by ethanol 2
D2Mit403.1 2 144674034 to 144674188 154 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 403.1
Tssr20547 2 144697331 to 144697333 2 + TSS region transcription start site region 20547
Tssr680 2 144698217 to 144698226 9 + TSS region transcription start site region 680
Tssr20548 2 144698241 to 144698256 15 + TSS region transcription start site region 20548
Tssr26613 2 144714558 to 144714562 4 - TSS region transcription start site region 26613
Tssr20549 2 144714783 to 144714794 11 + TSS region transcription start site region 20549
Tssr20550 2 144714845 to 144714859 14 + TSS region transcription start site region 20550
Tssr26614 2 144720600 to 144720607 7 - TSS region transcription start site region 26614
Tssr20551 2 144738410 to 144738430 20 + TSS region transcription start site region 20551
Tssr20552 2 144740025 to 144740034 9 + TSS region transcription start site region 20552
Tssr20553 2 144746621 to 144746626 5 + TSS region transcription start site region 20553
Gm11743 2 144756408 to 144758612 2204 + pseudogene predicted gene 11743
Gm39951 2 144770843 to 144796107 25264 + lncRNA gene predicted gene, 39951
D2Mit168 2 144822099 to 144822198 99 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 168
Bwq5 2 144822099 to 144822198 99 QTL body weight, QTL 5
Bdln3 2 144822099 to 144822198 99 QTL body length 3
D2Dcr98 2 144822101 to 144822204 103 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 98
D2Mit168.2 2 144822197 to 144822326 129 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 168.2
Scp2d1 2 144823666 to 144824415 749 + protein coding gene SCP2 sterol-binding domain containing 1
Gm39952 2 144828809 to 144920588 91779 + lncRNA gene predicted gene, 39952
Gm11746 2 144930858 to 144931678 820 - pseudogene predicted gene 11746
D2Dcr99 2 144982437 to 144982535 98 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 99
D2Mit404.1 2 145040759 to 145040895 136 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 404.1
D2Mit404 2 145040900 to 145041098 198 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 404
D2Ertd397e 2 145147358 to 145147567 209 DNA segment DNA segment, Chr 2, ERATO Doi 397, expressed
Cpgi12361 2 145166859 to 145168735 1876 CpG island CpG island 12361
Tssr20554 2 145167505 to 145167520 15 + TSS region transcription start site region 20554
Tssr20555 2 145167706 to 145167773 67 + TSS region transcription start site region 20555
Slc24a3 2 145167754 to 145642166 474412 + protein coding gene solute carrier family 24 (sodium/potassium/calcium exchanger), member 3
Tssr20556 2 145167846 to 145167900 54 + TSS region transcription start site region 20556
Tssr20557 2 145167904 to 145167982 78 + TSS region transcription start site region 20557
Tssr20558 2 145186409 to 145186414 5 + TSS region transcription start site region 20558
Gm14093 2 145337648 to 145379381 41733 + sense intronic lncRNA gene predicted gene 14093
Gm22731 2 145352843 to 145352936 93 + rRNA gene predicted gene, 22731
D2Ertd105e 2 145382985 to 145383184 199 DNA segment DNA segment, Chr 2, ERATO Doi 105, expressed
Tssr20559 2 145460241 to 145460246 5 + TSS region transcription start site region 20559
D2Dcr100 2 145470549 to 145470672 123 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 100
D2Mit109 2 145470552 to 145470727 175 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 109
Lith1 2 145470727 to 45457623 -100013104 QTL lithogenic gene 1
Gm22390 2 145481407 to 145481731 324 - unclassified non-coding RNA gene predicted gene, 22390
Gm11759 2 145510194 to 145510657 463 - pseudogene predicted gene 11759
Gm14092 2 145550652 to 145554982 4330 - antisense lncRNA gene predicted gene 14092
Gm19115 2 145567050 to 145567701 651 + pseudogene predicted gene, 19115
Cpgi12362 2 145674845 to 145676162 1317 CpG island CpG island 12362
Tssr20560 2 145675342 to 145675358 16 + TSS region transcription start site region 20560
Tssr20561 2 145675470 to 145675493 23 + TSS region transcription start site region 20561
Tssr20562 2 145675506 to 145675527 21 + TSS region transcription start site region 20562
BC039771 2 145701195 to 145753672 52477 + lncRNA gene cDNA sequence BC039771
Gm11763 2 145701414 to 145701725 311 - pseudogene predicted gene 11763
Tssr681 2 145707270 to 145707272 2 + TSS region transcription start site region 681
Gm34570 2 145711215 to 145712448 1233 - lncRNA gene predicted gene, 34570
Gm34513 2 145713298 to 145725398 12100 - lncRNA gene predicted gene, 34513
Tssr20563 2 145731060 to 145731064 4 + TSS region transcription start site region 20563
Rin2 2 145771727 to 145887616 115889 + protein coding gene Ras and Rab interactor 2
Tssr20564 2 145786122 to 145786152 30 + TSS region transcription start site region 20564
Tssr20565 2 145786260 to 145786274 14 + TSS region transcription start site region 20565
Tssr20566 2 145786279 to 145786307 28 + TSS region transcription start site region 20566
Tssr20567 2 145786324 to 145786335 11 + TSS region transcription start site region 20567
Tssr20568 2 145820002 to 145820005 3 + TSS region transcription start site region 20568
Tssr20569 2 145822142 to 145822157 15 + TSS region transcription start site region 20569
Tssr20570 2 145822185 to 145822196 11 + TSS region transcription start site region 20570
Tssr20571 2 145822253 to 145822303 50 + TSS region transcription start site region 20571
Tssr20572 2 145822550 to 145822612 62 + TSS region transcription start site region 20572
Tssr20573 2 145830886 to 145830900 14 + TSS region transcription start site region 20573
Tssr20574 2 145851026 to 145851040 14 + TSS region transcription start site region 20574
Tssr20575 2 145851119 to 145851124 5 + TSS region transcription start site region 20575
Tssr20576 2 145858440 to 145858463 23 + TSS region transcription start site region 20576
Tssr20577 2 145860034 to 145860057 23 + TSS region transcription start site region 20577
Tssr20578 2 145860141 to 145860156 15 + TSS region transcription start site region 20578
Tssr20579 2 145860161 to 145860175 14 + TSS region transcription start site region 20579
Tssr20580 2 145860232 to 145860246 14 + TSS region transcription start site region 20580
Cpgi12363 2 145860233 to 145861020 787 CpG island CpG island 12363
Tssr20581 2 145860353 to 145860368 15 + TSS region transcription start site region 20581
Tssr20582 2 145860485 to 145860521 36 + TSS region transcription start site region 20582
Tssr20583 2 145860653 to 145860699 46 + TSS region transcription start site region 20583
Tssr20584 2 145860702 to 145860725 23 + TSS region transcription start site region 20584
Tssr20585 2 145860734 to 145860747 13 + TSS region transcription start site region 20585
Tssr20586 2 145860760 to 145860763 3 + TSS region transcription start site region 20586
Tssr20587 2 145860879 to 145860886 7 + TSS region transcription start site region 20587
Tssr20588 2 145860891 to 145860904 13 + TSS region transcription start site region 20588
Tssr20589 2 145860916 to 145860925 9 + TSS region transcription start site region 20589
Tssr20590 2 145872476 to 145872501 25 + TSS region transcription start site region 20590
Gm25026 2 145878286 to 145878473 187 + miRNA gene predicted gene, 25026
Tssr20591 2 145878827 to 145878839 12 + TSS region transcription start site region 20591
Tssr20592 2 145878871 to 145878878 7 + TSS region transcription start site region 20592
D2Dcr101 2 145879448 to 145879561 113 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 101
Gm39954 2 145880114 to 145894181 14067 - lncRNA gene predicted gene, 39954
Tssr26615 2 145884905 to 145884914 9 - TSS region transcription start site region 26615
Tssr20593 2 145886340 to 145886358 18 + TSS region transcription start site region 20593
Tssr20594 2 145886402 to 145886420 18 + TSS region transcription start site region 20594
Tssr20595 2 145886643 to 145886654 11 + TSS region transcription start site region 20595
Tssr20596 2 145886876 to 145886899 23 + TSS region transcription start site region 20596
Tssr20597 2 145886900 to 145886921 21 + TSS region transcription start site region 20597
Tssr20598 2 145886930 to 145886941 11 + TSS region transcription start site region 20598
Tssr20599 2 145887017 to 145887030 13 + TSS region transcription start site region 20599
Gm11764 2 145892091 to 145892704 613 + pseudogene predicted gene 11764
Naa20 2 145902099 to 145916425 14326 + protein coding gene N(alpha)-acetyltransferase 20, NatB catalytic subunit
Cpgi12364 2 145903030 to 145903657 627 CpG island CpG island 12364
Tssr20600 2 145903222 to 145903227 5 + TSS region transcription start site region 20600
Tssr20601 2 145903234 to 145903300 66 + TSS region transcription start site region 20601
Tssr20602 2 145903890 to 145903903 13 + TSS region transcription start site region 20602
Crnkl1 2 145917482 to 145934700 17218 - protein coding gene crooked neck pre-mRNA splicing factor 1
Cpgi12365 2 145934266 to 145935054 788 CpG island CpG island 12365
Tssr26616 2 145934682 to 145934738 56 - TSS region transcription start site region 26616
Tssr20603 2 145934776 to 145934797 21 + TSS region transcription start site region 20603
Cfap61 2 145934784 to 145964226 29442 + protein coding gene cilia and flagella associated protein 61
Tssr20604 2 145934800 to 145934813 13 + TSS region transcription start site region 20604
Tssr20605 2 146047198 to 146047242 44 + TSS region transcription start site region 20605
D2Mit280 2 146051834 to 146052033 199 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 280
Gm34629 2 146095018 to 146099616 4598 - lncRNA gene predicted gene, 34629
Tssr26617 2 146099202 to 146099221 19 - TSS region transcription start site region 26617
Tssr20606 2 146101647 to 146101654 7 + TSS region transcription start site region 20606
Tssr20607 2 146101674 to 146101679 5 + TSS region transcription start site region 20607
Tssr26618 2 146198025 to 146198036 11 - TSS region transcription start site region 26618
Tssr26619 2 146198044 to 146198057 13 - TSS region transcription start site region 26619
Tssr20608 2 146200651 to 146200660 9 + TSS region transcription start site region 20608
Tssr20609 2 146200678 to 146200724 46 + TSS region transcription start site region 20609
Cpgi12366 2 146218156 to 146218803 647 CpG island CpG island 12366
Cpgi12367 2 146220676 to 146223989 3313 CpG island CpG island 12367
Insm1 2 146221997 to 146225020 3023 + protein coding gene insulinoma-associated 1
Tssr20610 2 146222093 to 146222111 18 + TSS region transcription start site region 20610
Ralgapa2 2 146239876 to 146512318 272442 - protein coding gene Ral GTPase activating protein, alpha subunit 2 (catalytic)
A930019D19Rik 2 146259286 to 146267160 7874 + antisense lncRNA gene RIKEN cDNA A930019D19 gene
Tssr26620 2 146261368 to 146261387 19 - TSS region transcription start site region 26620
B130033B12Rik 2 146270037 to 146271733 1696 unclassified gene RIKEN cDNA B130033B12 gene
Gm14117 2 146305547 to 146306386 839 + pseudogene predicted gene 14117
9630019E01Rik 2 146401616 to 146403853 2237 unclassified gene RIKEN cDNA 9630019E01 gene
V25Dq3 2 146500000 to 146500000 0 QTL vitamin D inactive form serum level QTL 3
Cpgi12368 2 146511371 to 146512456 1085 CpG island CpG island 12368
Tssr26621 2 146511946 to 146511979 33 - TSS region transcription start site region 26621
Tssr26622 2 146511992 to 146512015 23 - TSS region transcription start site region 26622
Tssr26623 2 146512026 to 146512083 57 - TSS region transcription start site region 26623
4933406D12Rik 2 146542931 to 146546108 3177 + lincRNA gene RIKEN cDNA 4933406D12 gene