Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:144260176-144671732

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82 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Snx5 2 144250123 to 144270902 20779 - protein coding gene sorting nexin 5
Tssr26592 2 144260677 to 144260680 3 - TSS region transcription start site region 26592
Gm11688 2 144261234 to 144261541 307 - pseudogene predicted gene 11688
Gm26165 2 144261589 to 144261726 137 - snoRNA gene predicted gene, 26165
Snord17 2 144265982 to 144266202 220 - snoRNA gene small nucleolar RNA, C/D box 17
Tssr20523 2 144266077 to 144266095 18 + TSS region transcription start site region 20523
Tssr26593 2 144266186 to 144266218 32 - TSS region transcription start site region 26593
Tssr26594 2 144270066 to 144270068 2 - TSS region transcription start site region 26594
Cpgi12351 2 144270116 to 144271365 1249 CpG island CpG island 12351
Tssr26595 2 144270440 to 144270486 46 - TSS region transcription start site region 26595
Tssr26596 2 144270504 to 144270533 29 - TSS region transcription start site region 26596
Tssr20524 2 144270574 to 144270591 17 + TSS region transcription start site region 20524
Tssr20525 2 144270622 to 144270672 50 + TSS region transcription start site region 20525
Tssr26597 2 144270780 to 144270800 20 - TSS region transcription start site region 26597
Tssr26598 2 144270836 to 144270847 11 - TSS region transcription start site region 26598
Tssr26599 2 144270852 to 144270863 11 - TSS region transcription start site region 26599
Mgme1 2 144270856 to 144281232 10376 + protein coding gene mitochondrial genome maintenance exonuclease 1
Tssr20526 2 144270878 to 144270949 71 + TSS region transcription start site region 20526
Tssr20527 2 144271011 to 144271055 44 + TSS region transcription start site region 20527
Tssr20528 2 144271628 to 144271633 5 + TSS region transcription start site region 20528
Ovol2 2 144305175 to 144332080 26905 - protein coding gene ovo like zinc finger 2
D2Mit491 2 144313458 to 144313580 122 DNA segment DNA Segment, Chr 2 Massachusetts Institute of Technology 491
D2Dcr97 2 144313468 to 144313563 95 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 97
Cpgi12352 2 144330364 to 144332263 1899 CpG island CpG island 12352
Tssr26600 2 144330770 to 144330781 11 - TSS region transcription start site region 26600
Tssr26601 2 144331355 to 144331367 12 - TSS region transcription start site region 26601
Tssr26602 2 144331371 to 144331392 21 - TSS region transcription start site region 26602
Tssr26603 2 144331408 to 144331414 6 - TSS region transcription start site region 26603
Tssr678 2 144331440 to 144331445 5 + TSS region transcription start site region 678
Tssr679 2 144331451 to 144331454 3 + TSS region transcription start site region 679
1700108N11Rik 2 144331459 to 144332639 1180 + antisense lncRNA gene RIKEN cDNA 1700108N11 gene
Tssr20529 2 144331478 to 144331483 5 + TSS region transcription start site region 20529
Tssr20530 2 144331486 to 144331560 74 + TSS region transcription start site region 20530
Cpgi12353 2 144333047 to 144333516 469 CpG island CpG island 12353
Gm34181 2 144337403 to 144344310 6907 + lncRNA gene predicted gene, 34181
Tssr20531 2 144337436 to 144337445 9 + TSS region transcription start site region 20531
Tssr20532 2 144337813 to 144337832 19 + TSS region transcription start site region 20532
Gm11700 2 144355917 to 144356319 402 + pseudogene predicted gene 11700
Gm11701 2 144364703 to 144365681 978 - pseudogene predicted gene 11701
Tssr26604 2 144365681 to 144365686 5 - TSS region transcription start site region 26604
Cpgi12354 2 144368508 to 144369484 976 CpG island CpG island 12354
Tssr20533 2 144368866 to 144368884 18 + TSS region transcription start site region 20533
Tssr20534 2 144368908 to 144368953 45 + TSS region transcription start site region 20534
Tssr20535 2 144368961 to 144368994 33 + TSS region transcription start site region 20535
Pet117 2 144368983 to 144373337 4354 + protein coding gene PET117 homolog
Kat14 2 144369032 to 144407675 38643 + protein coding gene lysine acetyltransferase 14
Tssr20536 2 144369034 to 144369046 12 + TSS region transcription start site region 20536
Tssr20537 2 144375355 to 144375358 3 + TSS region transcription start site region 20537
Gm46768 2 144415963 to 144421174 5211 - lncRNA gene predicted gene, 46768
Cpgi12355 2 144458996 to 144459266 270 CpG island CpG island 12355
Zfp133-ps 2 144459280 to 144467794 8514 + pseudogene zinc finger protein 133, pseudogene
Tssr20538 2 144464394 to 144464433 39 + TSS region transcription start site region 20538
Gm38402 2 144465176 to 144466732 1556 + pseudogene predicted gene, 38402
Tssr20539 2 144466331 to 144466333 2 + TSS region transcription start site region 20539
Dzank1 2 144470557 to 144527414 56857 - protein coding gene double zinc ribbon and ankyrin repeat domains 1
Tssr26605 2 144474429 to 144474439 10 - TSS region transcription start site region 26605
Tssr26606 2 144474871 to 144474882 11 - TSS region transcription start site region 26606
Cpgi12356 2 144527102 to 144528111 1009 CpG island CpG island 12356
Tssr26607 2 144527341 to 144527424 83 - TSS region transcription start site region 26607
Tssr26608 2 144527425 to 144527432 7 - TSS region transcription start site region 26608
Tssr26609 2 144527439 to 144527450 11 - TSS region transcription start site region 26609
Tssr26610 2 144527501 to 144527512 11 - TSS region transcription start site region 26610
Tssr20540 2 144527515 to 144527527 12 + TSS region transcription start site region 20540
Tssr26611 2 144527526 to 144527537 11 - TSS region transcription start site region 26611
Tssr20541 2 144527738 to 144527773 35 + TSS region transcription start site region 20541
Polr3f 2 144527745 to 144541779 14034 + protein coding gene polymerase (RNA) III (DNA directed) polypeptide F
Tssr20542 2 144527791 to 144527802 11 + TSS region transcription start site region 20542
Rbbp9 2 144542265 to 144550859 8594 - protein coding gene retinoblastoma binding protein 9, serine hydrolase
Cpgi12357 2 144550534 to 144550811 277 CpG island CpG island 12357
Tssr26612 2 144550777 to 144550864 87 - TSS region transcription start site region 26612
Gm34292 2 144555693 to 144564773 9080 - lncRNA gene predicted gene, 34292
Cpgi12358 2 144555742 to 144556646 904 CpG island CpG island 12358
Sec23b 2 144556229 to 144590749 34520 + protein coding gene SEC23 homolog B, COPII coat complex component
Tssr20543 2 144556235 to 144556298 63 + TSS region transcription start site region 20543
Tssr20544 2 144556306 to 144556323 17 + TSS region transcription start site region 20544
Cpgi12359 2 144593959 to 144594538 579 CpG island CpG island 12359
Tssr20545 2 144594056 to 144594083 27 + TSS region transcription start site region 20545
Smim26 2 144594065 to 144595365 1300 + protein coding gene small integral membrane protein 26
Cpgi12360 2 144599777 to 144600460 683 CpG island CpG island 12360
Tssr20546 2 144599946 to 144600039 93 + TSS region transcription start site region 20546
Dtd1 2 144599953 to 144768747 168794 + protein coding gene D-tyrosyl-tRNA deacylase 1
Gm24823 2 144618143 to 144618233 90 - miRNA gene predicted gene, 24823