Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:143965499-144365514

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82 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rrbp1 2 143947395 to 144011263 63868 - protein coding gene ribosome binding protein 1
Tssr26572 2 143983164 to 143983172 8 - TSS region transcription start site region 26572
Tssr26573 2 143988452 to 143988475 23 - TSS region transcription start site region 26573
Tssr26574 2 143988974 to 143988985 11 - TSS region transcription start site region 26574
Tssr26575 2 143989002 to 143989017 15 - TSS region transcription start site region 26575
Tssr26576 2 143989061 to 143989077 16 - TSS region transcription start site region 26576
Tssr26577 2 143989094 to 143989108 14 - TSS region transcription start site region 26577
Tssr26578 2 143989334 to 143989344 10 - TSS region transcription start site region 26578
Tssr26579 2 143989672 to 143989693 21 - TSS region transcription start site region 26579
Tssr20515 2 143989781 to 143989824 43 + TSS region transcription start site region 20515
Tssr26580 2 143989879 to 143989903 24 - TSS region transcription start site region 26580
Tssr20516 2 143989980 to 143990064 84 + TSS region transcription start site region 20516
Tssr26581 2 143990119 to 143990150 31 - TSS region transcription start site region 26581
Tssr26582 2 143990177 to 143990221 44 - TSS region transcription start site region 26582
Tssr26583 2 144009202 to 144009218 16 - TSS region transcription start site region 26583
Cpgi12349 2 144009767 to 144011735 1968 CpG island CpG island 12349
Tssr26584 2 144010810 to 144010883 73 - TSS region transcription start site region 26584
Tssr26585 2 144011172 to 144011197 25 - TSS region transcription start site region 26585
Tssr26586 2 144011202 to 144011236 34 - TSS region transcription start site region 26586
Tssr20517 2 144033062 to 144033067 5 + TSS region transcription start site region 20517
Tssr20518 2 144033077 to 144033110 33 + TSS region transcription start site region 20518
Banf2 2 144033102 to 144073979 40877 + protein coding gene barrier to autointegration factor 2
Tssr20519 2 144033111 to 144033123 12 + TSS region transcription start site region 20519
Tssr20520 2 144033127 to 144033134 7 + TSS region transcription start site region 20520
D2Dcr91 2 144037430 to 144037525 95 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 91
Banf2os 2 144059138 to 144068806 9668 - antisense lncRNA gene barrier to autointegration factor 2, opposite strand
D2Dcr92 2 144104929 to 144105033 104 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 92
D2Dcr93 2 144105023 to 144105120 97 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 93
Tssr20521 2 144116178 to 144116189 11 + TSS region transcription start site region 20521
Tssr677 2 144116203 to 144116222 19 + TSS region transcription start site region 677
Gm11687 2 144142488 to 144143373 885 - pseudogene predicted gene 11687
D2Dcr94 2 144159438 to 144159528 90 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 94
Cpgi12350 2 144165455 to 144165886 431 CpG island CpG island 12350
Tssr20522 2 144165499 to 144165514 15 + TSS region transcription start site region 20522
Gm5535 2 144173150 to 144189290 16140 - lincRNA gene predicted gene 5535
D2Dcr95 2 144181998 to 144182149 151 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 95
D2Dcr96 2 144210087 to 144210250 163 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 96
4930444E06Rik 2 144243241 to 144244849 1608 + antisense lncRNA gene RIKEN cDNA 4930444E06 gene
Snx5 2 144250123 to 144270902 20779 - protein coding gene sorting nexin 5
Tssr26587 2 144253743 to 144253764 21 - TSS region transcription start site region 26587
Tssr26588 2 144254757 to 144254789 32 - TSS region transcription start site region 26588
Tssr26589 2 144255394 to 144255412 18 - TSS region transcription start site region 26589
Tssr26590 2 144255592 to 144255606 14 - TSS region transcription start site region 26590
Tssr26591 2 144257130 to 144257159 29 - TSS region transcription start site region 26591
Tssr26592 2 144260677 to 144260680 3 - TSS region transcription start site region 26592
Gm11688 2 144261234 to 144261541 307 - pseudogene predicted gene 11688
Gm26165 2 144261589 to 144261726 137 - snoRNA gene predicted gene, 26165
Snord17 2 144265982 to 144266202 220 - snoRNA gene small nucleolar RNA, C/D box 17
Tssr20523 2 144266077 to 144266095 18 + TSS region transcription start site region 20523
Tssr26593 2 144266186 to 144266218 32 - TSS region transcription start site region 26593
Tssr26594 2 144270066 to 144270068 2 - TSS region transcription start site region 26594
Cpgi12351 2 144270116 to 144271365 1249 CpG island CpG island 12351
Tssr26595 2 144270440 to 144270486 46 - TSS region transcription start site region 26595
Tssr26596 2 144270504 to 144270533 29 - TSS region transcription start site region 26596
Tssr20524 2 144270574 to 144270591 17 + TSS region transcription start site region 20524
Tssr20525 2 144270622 to 144270672 50 + TSS region transcription start site region 20525
Tssr26597 2 144270780 to 144270800 20 - TSS region transcription start site region 26597
Tssr26598 2 144270836 to 144270847 11 - TSS region transcription start site region 26598
Tssr26599 2 144270852 to 144270863 11 - TSS region transcription start site region 26599
Mgme1 2 144270856 to 144281232 10376 + protein coding gene mitochondrial genome maintenance exonuclease 1
Tssr20526 2 144270878 to 144270949 71 + TSS region transcription start site region 20526
Tssr20527 2 144271011 to 144271055 44 + TSS region transcription start site region 20527
Tssr20528 2 144271628 to 144271633 5 + TSS region transcription start site region 20528
Ovol2 2 144305175 to 144332080 26905 - protein coding gene ovo like zinc finger 2
D2Mit491 2 144313458 to 144313580 122 DNA segment DNA Segment, Chr 2 Massachusetts Institute of Technology 491
D2Dcr97 2 144313468 to 144313563 95 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 97
Cpgi12352 2 144330364 to 144332263 1899 CpG island CpG island 12352
Tssr26600 2 144330770 to 144330781 11 - TSS region transcription start site region 26600
Tssr26601 2 144331355 to 144331367 12 - TSS region transcription start site region 26601
Tssr26602 2 144331371 to 144331392 21 - TSS region transcription start site region 26602
Tssr26603 2 144331408 to 144331414 6 - TSS region transcription start site region 26603
Tssr678 2 144331440 to 144331445 5 + TSS region transcription start site region 678
Tssr679 2 144331451 to 144331454 3 + TSS region transcription start site region 679
1700108N11Rik 2 144331459 to 144332639 1180 + antisense lncRNA gene RIKEN cDNA 1700108N11 gene
Tssr20529 2 144331478 to 144331483 5 + TSS region transcription start site region 20529
Tssr20530 2 144331486 to 144331560 74 + TSS region transcription start site region 20530
Cpgi12353 2 144333047 to 144333516 469 CpG island CpG island 12353
Gm34181 2 144337403 to 144344310 6907 + lncRNA gene predicted gene, 34181
Tssr20531 2 144337436 to 144337445 9 + TSS region transcription start site region 20531
Tssr20532 2 144337813 to 144337832 19 + TSS region transcription start site region 20532
Gm11700 2 144355917 to 144356319 402 + pseudogene predicted gene 11700
Gm11701 2 144364703 to 144365681 978 - pseudogene predicted gene 11701