Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:140909058-143839075

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95 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
El2 2 122376665 to 142690215 20313550 QTL epilepsy 2
Macrod2 2 140395356 to 142392966 1997610 + protein coding gene MACRO domain containing 2
Calr-ps 2 140955765 to 140956249 484 - pseudogene calreticulin, pseudogene
Tssr26556 2 140955957 to 140955986 29 - TSS region transcription start site region 26556
Tssr26557 2 140956059 to 140956071 12 - TSS region transcription start site region 26557
Tssr20486 2 140965927 to 140965946 19 + TSS region transcription start site region 20486
D2Dcr85 2 141008401 to 141008513 112 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 85
D2Dcr86 2 141019932 to 141020027 95 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 86
D2Mit166 2 141095391 to 141095504 113 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 166
Pgia2 2 141095391 to 141095504 113 QTL proteoglycan induced arthritis 2
Zcchc9-ps 2 141127280 to 141128062 782 + pseudogene zinc finger, CCHC domain containing 9, pseudogene
2900060K15Rik 2 141175069 to 141176396 1327 unclassified gene RIKEN cDNA 2900060K15 gene
Tssr20487 2 141179999 to 141180006 7 + TSS region transcription start site region 20487
Tssr20488 2 141182898 to 141182900 2 + TSS region transcription start site region 20488
Macrod2os2 2 141229670 to 141235426 5756 - antisense lncRNA gene MACRO domain containing 2, opposite strand 2
Macrod2os1 2 141230431 to 141286991 56560 - antisense lncRNA gene MACRO domain containing 2, opposite strand 1
D2Mit526.1 2 141346087 to 141346196 109 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 526.1
D2Mit526 2 141346175 to 141346285 110 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 526
D2Mit526.2 2 141346262 to 141346374 112 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 526.2
D2Mit422 2 141375144 to 141375267 123 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 422
Tssr20489 2 141611824 to 141611826 2 + TSS region transcription start site region 20489
Gm25583 2 141640490 to 141640596 106 + snRNA gene predicted gene, 25583
Fau-ps1 2 141838927 to 141839392 465 + pseudogene Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived), pseudogene 1
D2Dcr87 2 141925532 to 141925640 108 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 87
D2Mit212 2 141951342 to 141951491 149 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 212
D2Dcr88 2 141969600 to 141969709 109 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 88
D2Mit308 2 142019628 to 142019754 126 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 308
D2Mit401 2 142217381 to 142217500 119 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 401
Ssrq1 2 142217381 to 146052033 3834652 QTL stress response QTL 1
Tssr20490 2 142217579 to 142217593 14 + TSS region transcription start site region 20490
Tssr20491 2 142217603 to 142217608 5 + TSS region transcription start site region 20491
Tssr20492 2 142217616 to 142217623 7 + TSS region transcription start site region 20492
Tssr20493 2 142219647 to 142219648 1 + TSS region transcription start site region 20493
D2Dcr118 2 142332626 to 142332722 96 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 118
Tssr20494 2 142374058 to 142374075 17 + TSS region transcription start site region 20494
D2Ertd634e 2 142376394 to 142376633 239 DNA segment DNA segment, Chr 2, ERATO Doi 634, expressed
Gm23179 2 142381988 to 142382291 303 + unclassified non-coding RNA gene predicted gene, 23179
Tssr20495 2 142570465 to 142570467 2 + TSS region transcription start site region 20495
Rpl26-ps5 2 142570508 to 142570946 438 + pseudogene ribosomal protein L26, pseudogene 5
Tssr20496 2 142576897 to 142576912 15 + TSS region transcription start site region 20496
Rbmx2-ps 2 142576928 to 142577857 929 + pseudogene RNA binding motif protein, X-linked 2, pseudogene
Kif16b 2 142618340 to 142901594 283254 - protein coding gene kinesin family member 16B
Tssr20497 2 142631995 to 142632007 12 + TSS region transcription start site region 20497
Tssr20498 2 142632048 to 142632060 12 + TSS region transcription start site region 20498
D2Mit21 2 142689947 to 142690215 268 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 21
Tssr20499 2 142699610 to 142699623 13 + TSS region transcription start site region 20499
D2Mit259 2 142751556 to 142751697 141 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 259
Bhr1 2 142751556 to 178800659 36049103 QTL bronchial hyperresponsiveness 1
Tssr26558 2 142758048 to 142758056 8 - TSS region transcription start site region 26558
Tssr26559 2 142766259 to 142766261 2 - TSS region transcription start site region 26559
Tssr26560 2 142778467 to 142778471 4 - TSS region transcription start site region 26560
Gm22310 2 142786896 to 142787011 115 + snoRNA gene predicted gene, 22310
D2Dcr119 2 142797479 to 142797576 97 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 119
Tssr26561 2 142838210 to 142838235 25 - TSS region transcription start site region 26561
Tssr26562 2 142879585 to 142879604 19 - TSS region transcription start site region 26562
Tssr26563 2 142879625 to 142879636 11 - TSS region transcription start site region 26563
Cpgi12341 2 142901027 to 142901899 872 CpG island CpG island 12341
Tssr26564 2 142901434 to 142901474 40 - TSS region transcription start site region 26564
Tssr26565 2 142901506 to 142901576 70 - TSS region transcription start site region 26565
Cpgi12342 2 142902931 to 142903283 352 CpG island CpG island 12342
Kif16bos 2 142902965 to 142903572 607 + antisense lncRNA gene kinesin family member 16B, opposite strand
Tssr20500 2 142902965 to 142902976 11 + TSS region transcription start site region 20500
D2Dcr89 2 142938798 to 142938924 126 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 89
Cpgi12343 2 143062824 to 143063618 794 CpG island CpG island 12343
Tssr20501 2 143063031 to 143063077 46 + TSS region transcription start site region 20501
Snrpb2 2 143063069 to 143072052 8983 + protein coding gene U2 small nuclear ribonucleoprotein B
Tssr20502 2 143071498 to 143071515 17 + TSS region transcription start site region 20502
Tssr20503 2 143078467 to 143078482 15 + TSS region transcription start site region 20503
Otor 2 143078492 to 143081700 3208 + protein coding gene otoraplin
Tssr674 2 143080013 to 143080021 8 - TSS region transcription start site region 674
Tssr26566 2 143081229 to 143081246 17 - TSS region transcription start site region 26566
Tssr26567 2 143081688 to 143081712 24 - TSS region transcription start site region 26567
D2Dcr120 2 143118491 to 143118587 96 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 120
Gm14083 2 143129720 to 143130339 619 - pseudogene predicted gene 14083
Gm14082 2 143150830 to 143151630 800 - pseudogene predicted gene 14082
D2Mit137 2 143174494 to 143174581 87 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 137
Tssr675 2 143282775 to 143282776 1 + TSS region transcription start site region 675
Gm11644 2 143349512 to 143349661 149 + pseudogene predicted gene 11644
Tssr20504 2 143368736 to 143368738 2 + TSS region transcription start site region 20504
D2Dcr121 2 143369776 to 143369884 108 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 121
D2Mit513 2 143412744 to 143412888 144 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology-513
Gm33599 2 143420619 to 143487158 66539 - lncRNA gene predicted gene, 33599
Gm11645 2 143506411 to 143507059 648 - pseudogene predicted gene 11645
Pcsk2os1 2 143535476 to 143547837 12361 - antisense lncRNA gene proprotein convertase subtilisin/kexin type 2, opposite strand 1
Cpgi12344 2 143545523 to 143546577 1054 CpG island CpG island 12344
Tssr20505 2 143546144 to 143546215 71 + TSS region transcription start site region 20505
Pcsk2 2 143546156 to 143816285 270129 + protein coding gene proprotein convertase subtilisin/kexin type 2
Tssr20506 2 143546218 to 143546231 13 + TSS region transcription start site region 20506
Cpgi12345 2 143546947 to 143547259 312 CpG island CpG island 12345
Cpgi12346 2 143547632 to 143548133 501 CpG island CpG island 12346
D2Dcr122 2 143590803 to 143590898 95 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 122
D2Dcr123 2 143593006 to 143593104 98 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 123
Tssr676 2 143696655 to 143696659 4 + TSS region transcription start site region 676
Pcsk2os2 2 143747583 to 143789186 41603 - antisense lncRNA gene proprotein convertase subtilisin/kexin type 2, opposite strand 2
Bfsp1 2 143826528 to 143863173 36645 - protein coding gene beaded filament structural protein 1, in lens-CP94