Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:140000309-142787966

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100 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
El2 2 122376665 to 142690215 20313550 QTL epilepsy 2
Tasp1 2 139833480 to 140066805 233325 - protein coding gene taspase, threonine aspartase 1
D2Dcr83 2 140007644 to 140007744 100 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 83
Tssr26537 2 140019458 to 140019464 6 - TSS region transcription start site region 26537
D2Dcr84 2 140034964 to 140035061 97 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 84
D2Mit138 2 140041095 to 140041211 116 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 138
Hrtfm5 2 140041095 to 140041211 116 QTL heart failure modifier 5
Tssr26538 2 140042122 to 140042132 10 - TSS region transcription start site region 26538
Tssr26539 2 140042139 to 140042170 31 - TSS region transcription start site region 26539
Tssr26540 2 140042172 to 140042192 20 - TSS region transcription start site region 26540
Tssr20476 2 140056007 to 140056020 13 + TSS region transcription start site region 20476
Tssr20477 2 140056035 to 140056047 12 + TSS region transcription start site region 20477
Tssr20478 2 140056052 to 140056063 11 + TSS region transcription start site region 20478
Tssr26541 2 140060215 to 140060222 7 - TSS region transcription start site region 26541
Tssr26542 2 140065825 to 140065847 22 - TSS region transcription start site region 26542
Cpgi12337 2 140066316 to 140067208 892 CpG island CpG island 12337
Tssr26543 2 140066661 to 140066796 135 - TSS region transcription start site region 26543
Rps19-ps7 2 140073032 to 140073469 437 - pseudogene ribosomal protein S19, pseudogene 7
Gm14073 2 140110022 to 140110402 380 - pseudogene predicted gene 14073
Esf1 2 140119881 to 140170558 50677 - protein coding gene ESF1 nucleolar pre-rRNA processing protein homolog
Gm17374 2 140152043 to 140153532 1489 + protein coding gene predicted gene, 17374
Cpgi12338 2 140170197 to 140171089 892 CpG island CpG island 12338
Tssr26544 2 140170528 to 140170569 41 - TSS region transcription start site region 26544
Tssr20479 2 140170641 to 140170701 60 + TSS region transcription start site region 20479
Ndufaf5 2 140170649 to 140203689 33040 + protein coding gene NADH:ubiquinone oxidoreductase complex assembly factor 5
Tssr20480 2 140171016 to 140171043 27 + TSS region transcription start site region 20480
Sel1l2 2 140229855 to 140389706 159851 - protein coding gene sel-1 suppressor of lin-12-like 2 (C. elegans)
Tssr26545 2 140389698 to 140389729 31 - TSS region transcription start site region 26545
Tssr26546 2 140389731 to 140389738 7 - TSS region transcription start site region 26546
Cpgi12339 2 140394951 to 140396428 1477 CpG island CpG island 12339
Macrod2 2 140395356 to 142392966 1997610 + protein coding gene MACRO domain containing 2
Tssr20481 2 140395421 to 140395438 17 + TSS region transcription start site region 20481
Tssr20482 2 140395446 to 140395465 19 + TSS region transcription start site region 20482
Gm23846 2 140440541 to 140440647 106 - snRNA gene predicted gene, 23846
Tssr20483 2 140589531 to 140589537 6 + TSS region transcription start site region 20483
Tssr26547 2 140592374 to 140592375 1 - TSS region transcription start site region 26547
Tssr20484 2 140598485 to 140598496 11 + TSS region transcription start site region 20484
Gm39948 2 140634204 to 140645746 11542 + lncRNA gene predicted gene, 39948
Flrt3 2 140658198 to 140671476 13278 - protein coding gene fibronectin leucine rich transmembrane protein 3
Tssr26548 2 140659688 to 140659715 27 - TSS region transcription start site region 26548
Tssr26549 2 140660368 to 140660388 20 - TSS region transcription start site region 26549
Cpgi12340 2 140671348 to 140671510 162 CpG island CpG island 12340
Tssr673 2 140671380 to 140671387 7 - TSS region transcription start site region 673
Tssr26550 2 140671406 to 140671427 21 - TSS region transcription start site region 26550
Tssr26551 2 140671428 to 140671439 11 - TSS region transcription start site region 26551
Tssr26552 2 140671440 to 140671458 18 - TSS region transcription start site region 26552
Tssr26553 2 140671462 to 140671476 14 - TSS region transcription start site region 26553
Tssr26554 2 140773552 to 140773555 3 - TSS region transcription start site region 26554
Tssr20485 2 140783689 to 140783702 13 + TSS region transcription start site region 20485
Tssr26555 2 140790432 to 140790449 17 - TSS region transcription start site region 26555
Calr-ps 2 140955765 to 140956249 484 - pseudogene calreticulin, pseudogene
Tssr26556 2 140955957 to 140955986 29 - TSS region transcription start site region 26556
Tssr26557 2 140956059 to 140956071 12 - TSS region transcription start site region 26557
Tssr20486 2 140965927 to 140965946 19 + TSS region transcription start site region 20486
D2Dcr85 2 141008401 to 141008513 112 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 85
D2Dcr86 2 141019932 to 141020027 95 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 86
D2Mit166 2 141095391 to 141095504 113 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 166
Pgia2 2 141095391 to 141095504 113 QTL proteoglycan induced arthritis 2
Zcchc9-ps 2 141127280 to 141128062 782 + pseudogene zinc finger, CCHC domain containing 9, pseudogene
2900060K15Rik 2 141175069 to 141176396 1327 unclassified gene RIKEN cDNA 2900060K15 gene
Tssr20487 2 141179999 to 141180006 7 + TSS region transcription start site region 20487
Tssr20488 2 141182898 to 141182900 2 + TSS region transcription start site region 20488
Macrod2os2 2 141229670 to 141235426 5756 - antisense lncRNA gene MACRO domain containing 2, opposite strand 2
Macrod2os1 2 141230431 to 141286991 56560 - antisense lncRNA gene MACRO domain containing 2, opposite strand 1
D2Mit526.1 2 141346087 to 141346196 109 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 526.1
D2Mit526 2 141346175 to 141346285 110 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 526
D2Mit526.2 2 141346262 to 141346374 112 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 526.2
D2Mit422 2 141375144 to 141375267 123 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 422
Tssr20489 2 141611824 to 141611826 2 + TSS region transcription start site region 20489
Gm25583 2 141640490 to 141640596 106 + snRNA gene predicted gene, 25583
Fau-ps1 2 141838927 to 141839392 465 + pseudogene Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived), pseudogene 1
D2Dcr87 2 141925532 to 141925640 108 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 87
D2Mit212 2 141951342 to 141951491 149 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 212
D2Dcr88 2 141969600 to 141969709 109 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 88
D2Mit308 2 142019628 to 142019754 126 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 308
D2Mit401 2 142217381 to 142217500 119 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 401
Ssrq1 2 142217381 to 146052033 3834652 QTL stress response QTL 1
Tssr20490 2 142217579 to 142217593 14 + TSS region transcription start site region 20490
Tssr20491 2 142217603 to 142217608 5 + TSS region transcription start site region 20491
Tssr20492 2 142217616 to 142217623 7 + TSS region transcription start site region 20492
Tssr20493 2 142219647 to 142219648 1 + TSS region transcription start site region 20493
D2Dcr118 2 142332626 to 142332722 96 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 118
Tssr20494 2 142374058 to 142374075 17 + TSS region transcription start site region 20494
D2Ertd634e 2 142376394 to 142376633 239 DNA segment DNA segment, Chr 2, ERATO Doi 634, expressed
Gm23179 2 142381988 to 142382291 303 + unclassified non-coding RNA gene predicted gene, 23179
Tssr20495 2 142570465 to 142570467 2 + TSS region transcription start site region 20495
Rpl26-ps5 2 142570508 to 142570946 438 + pseudogene ribosomal protein L26, pseudogene 5
Tssr20496 2 142576897 to 142576912 15 + TSS region transcription start site region 20496
Rbmx2-ps 2 142576928 to 142577857 929 + pseudogene RNA binding motif protein, X-linked 2, pseudogene
Kif16b 2 142618340 to 142901594 283254 - protein coding gene kinesin family member 16B
Tssr20497 2 142631995 to 142632007 12 + TSS region transcription start site region 20497
Tssr20498 2 142632048 to 142632060 12 + TSS region transcription start site region 20498
D2Mit21 2 142689947 to 142690215 268 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 21
Tssr20499 2 142699610 to 142699623 13 + TSS region transcription start site region 20499
D2Mit259 2 142751556 to 142751697 141 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 259
Bhr1 2 142751556 to 178800659 36049103 QTL bronchial hyperresponsiveness 1
Tssr26558 2 142758048 to 142758056 8 - TSS region transcription start site region 26558
Tssr26559 2 142766259 to 142766261 2 - TSS region transcription start site region 26559
Tssr26560 2 142778467 to 142778471 4 - TSS region transcription start site region 26560
Gm22310 2 142786896 to 142787011 115 + snoRNA gene predicted gene, 22310