Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:138530496-146417033

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457 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
El2 2 122376665 to 142690215 20313550 QTL epilepsy 2
Btbd3 2 138256565 to 138589292 332727 + protein coding gene BTB (POZ) domain containing 3
Gm14061 2 138589392 to 138649122 59730 + lincRNA gene predicted gene 14061
D2Mit209 2 138700655 to 138700775 120 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 209
D2Mit209.2 2 138700750 to 138700863 113 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 209.2
Tssr20461 2 138714629 to 138714640 11 + TSS region transcription start site region 20461
Mir1952 2 138819929 to 138820007 78 + miRNA gene microRNA 1952
Gm14065 2 138872023 to 138872607 584 + pseudogene predicted gene 14065
D2Mit490 2 138895496 to 138895600 104 DNA segment DNA Segment, Chr 2 Massachusetts Institute of Technology 490
Nktcn2 2 138895496 to 146052033 7156537 QTL natural killer T cell numbers 2
Gm14067 2 138916619 to 138916932 313 - pseudogene predicted gene 14067
Gm14069 2 139175897 to 139176125 228 - pseudogene predicted gene 14069
Gm14066 2 139256344 to 139306924 50580 - unclassified non-coding RNA gene predicted gene 14066
Gm14071 2 139383832 to 139384340 508 - pseudogene predicted gene 14071
D2Mit339 2 139444611 to 139444750 139 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 339
Sptlc3 2 139493913 to 139637674 143761 + protein coding gene serine palmitoyltransferase, long chain base subunit 3
Tssr20462 2 139493914 to 139493923 9 + TSS region transcription start site region 20462
Tssr20463 2 139493932 to 139493937 5 + TSS region transcription start site region 20463
Tssr20464 2 139493954 to 139493972 18 + TSS region transcription start site region 20464
Tssr20465 2 139493976 to 139494015 39 + TSS region transcription start site region 20465
Tssr20466 2 139494038 to 139494050 12 + TSS region transcription start site region 20466
Tssr20467 2 139494053 to 139494063 10 + TSS region transcription start site region 20467
Tssr20468 2 139494118 to 139494175 57 + TSS region transcription start site region 20468
Tssr20469 2 139494192 to 139494197 5 + TSS region transcription start site region 20469
Tssr20470 2 139546017 to 139546020 3 + TSS region transcription start site region 20470
Tssr20471 2 139579468 to 139579478 10 + TSS region transcription start site region 20471
Gm27385 2 139588227 to 139588330 103 + snRNA gene predicted gene, 27385
Tssr20472 2 139601218 to 139601221 3 + TSS region transcription start site region 20472
3021401L19Rik 2 139673240 to 139675390 2150 unclassified gene RIKEN cDNA 3021401L19 gene
Cpgi12335 2 139677027 to 139679191 2164 CpG island CpG island 12335
Tssr20473 2 139677177 to 139677194 17 + TSS region transcription start site region 20473
Tssr20474 2 139677701 to 139677720 19 + TSS region transcription start site region 20474
Ism1 2 139678178 to 139758581 80403 + protein coding gene isthmin 1, angiogenesis inhibitor
Tssr20475 2 139678637 to 139678680 43 + TSS region transcription start site region 20475
Cpgi12336 2 139745821 to 139746031 210 CpG island CpG island 12336
Tasp1 2 139833480 to 140066805 233325 - protein coding gene taspase, threonine aspartase 1
Gm14070 2 139863297 to 139863724 427 + pseudogene predicted gene 14070
D2Dcr83 2 140007644 to 140007744 100 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 83
Tssr26537 2 140019458 to 140019464 6 - TSS region transcription start site region 26537
D2Dcr84 2 140034964 to 140035061 97 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 84
Hrtfm5 2 140041095 to 140041211 116 QTL heart failure modifier 5
D2Mit138 2 140041095 to 140041211 116 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 138
Tssr26538 2 140042122 to 140042132 10 - TSS region transcription start site region 26538
Tssr26539 2 140042139 to 140042170 31 - TSS region transcription start site region 26539
Tssr26540 2 140042172 to 140042192 20 - TSS region transcription start site region 26540
Tssr20476 2 140056007 to 140056020 13 + TSS region transcription start site region 20476
Tssr20477 2 140056035 to 140056047 12 + TSS region transcription start site region 20477
Tssr20478 2 140056052 to 140056063 11 + TSS region transcription start site region 20478
Tssr26541 2 140060215 to 140060222 7 - TSS region transcription start site region 26541
Tssr26542 2 140065825 to 140065847 22 - TSS region transcription start site region 26542
Cpgi12337 2 140066316 to 140067208 892 CpG island CpG island 12337
Tssr26543 2 140066661 to 140066796 135 - TSS region transcription start site region 26543
Rps19-ps7 2 140073032 to 140073469 437 - pseudogene ribosomal protein S19, pseudogene 7
Gm14073 2 140110022 to 140110402 380 - pseudogene predicted gene 14073
Esf1 2 140119881 to 140170558 50677 - protein coding gene ESF1 nucleolar pre-rRNA processing protein homolog
Gm17374 2 140152043 to 140153532 1489 + protein coding gene predicted gene, 17374
Cpgi12338 2 140170197 to 140171089 892 CpG island CpG island 12338
Tssr26544 2 140170528 to 140170569 41 - TSS region transcription start site region 26544
Tssr20479 2 140170641 to 140170701 60 + TSS region transcription start site region 20479
Ndufaf5 2 140170649 to 140203689 33040 + protein coding gene NADH:ubiquinone oxidoreductase complex assembly factor 5
Tssr20480 2 140171016 to 140171043 27 + TSS region transcription start site region 20480
Sel1l2 2 140229855 to 140389706 159851 - protein coding gene sel-1 suppressor of lin-12-like 2 (C. elegans)
Tssr26545 2 140389698 to 140389729 31 - TSS region transcription start site region 26545
Tssr26546 2 140389731 to 140389738 7 - TSS region transcription start site region 26546
Cpgi12339 2 140394951 to 140396428 1477 CpG island CpG island 12339
Macrod2 2 140395356 to 142392966 1997610 + protein coding gene MACRO domain containing 2
Tssr20481 2 140395421 to 140395438 17 + TSS region transcription start site region 20481
Tssr20482 2 140395446 to 140395465 19 + TSS region transcription start site region 20482
Gm23846 2 140440541 to 140440647 106 - snRNA gene predicted gene, 23846
Tssr20483 2 140589531 to 140589537 6 + TSS region transcription start site region 20483
Tssr26547 2 140592374 to 140592375 1 - TSS region transcription start site region 26547
Tssr20484 2 140598485 to 140598496 11 + TSS region transcription start site region 20484
Gm39948 2 140634204 to 140645746 11542 + lncRNA gene predicted gene, 39948
Flrt3 2 140658198 to 140671476 13278 - protein coding gene fibronectin leucine rich transmembrane protein 3
Tssr26548 2 140659688 to 140659715 27 - TSS region transcription start site region 26548
Tssr26549 2 140660368 to 140660388 20 - TSS region transcription start site region 26549
Cpgi12340 2 140671348 to 140671510 162 CpG island CpG island 12340
Tssr673 2 140671380 to 140671387 7 - TSS region transcription start site region 673
Tssr26550 2 140671406 to 140671427 21 - TSS region transcription start site region 26550
Tssr26551 2 140671428 to 140671439 11 - TSS region transcription start site region 26551
Tssr26552 2 140671440 to 140671458 18 - TSS region transcription start site region 26552
Tssr26553 2 140671462 to 140671476 14 - TSS region transcription start site region 26553
Tssr26554 2 140773552 to 140773555 3 - TSS region transcription start site region 26554
Tssr20485 2 140783689 to 140783702 13 + TSS region transcription start site region 20485
Tssr26555 2 140790432 to 140790449 17 - TSS region transcription start site region 26555
Calr-ps 2 140955765 to 140956249 484 - pseudogene calreticulin, pseudogene
Tssr26556 2 140955957 to 140955986 29 - TSS region transcription start site region 26556
Tssr26557 2 140956059 to 140956071 12 - TSS region transcription start site region 26557
Tssr20486 2 140965927 to 140965946 19 + TSS region transcription start site region 20486
D2Dcr85 2 141008401 to 141008513 112 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 85
D2Dcr86 2 141019932 to 141020027 95 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 86
D2Mit166 2 141095391 to 141095504 113 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 166
Pgia2 2 141095391 to 141095504 113 QTL proteoglycan induced arthritis 2
Zcchc9-ps 2 141127280 to 141128062 782 + pseudogene zinc finger, CCHC domain containing 9, pseudogene
2900060K15Rik 2 141175069 to 141176396 1327 unclassified gene RIKEN cDNA 2900060K15 gene
Tssr20487 2 141179999 to 141180006 7 + TSS region transcription start site region 20487
Tssr20488 2 141182898 to 141182900 2 + TSS region transcription start site region 20488
Macrod2os2 2 141229670 to 141235426 5756 - antisense lncRNA gene MACRO domain containing 2, opposite strand 2
Macrod2os1 2 141230431 to 141286991 56560 - antisense lncRNA gene MACRO domain containing 2, opposite strand 1
D2Mit526.1 2 141346087 to 141346196 109 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 526.1
D2Mit526 2 141346175 to 141346285 110 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 526
D2Mit526.2 2 141346262 to 141346374 112 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 526.2
D2Mit422 2 141375144 to 141375267 123 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 422
Tssr20489 2 141611824 to 141611826 2 + TSS region transcription start site region 20489
Gm25583 2 141640490 to 141640596 106 + snRNA gene predicted gene, 25583
Fau-ps1 2 141838927 to 141839392 465 + pseudogene Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (fox derived), pseudogene 1
D2Dcr87 2 141925532 to 141925640 108 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 87
D2Mit212 2 141951342 to 141951491 149 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 212
D2Dcr88 2 141969600 to 141969709 109 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 88
D2Mit308 2 142019628 to 142019754 126 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 308
Ssrq1 2 142217381 to 146052033 3834652 QTL stress response QTL 1
D2Mit401 2 142217381 to 142217500 119 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 401
Tssr20490 2 142217579 to 142217593 14 + TSS region transcription start site region 20490
Tssr20491 2 142217603 to 142217608 5 + TSS region transcription start site region 20491
Tssr20492 2 142217616 to 142217623 7 + TSS region transcription start site region 20492
Tssr20493 2 142219647 to 142219648 1 + TSS region transcription start site region 20493
D2Dcr118 2 142332626 to 142332722 96 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 118
Tssr20494 2 142374058 to 142374075 17 + TSS region transcription start site region 20494
D2Ertd634e 2 142376394 to 142376633 239 DNA segment DNA segment, Chr 2, ERATO Doi 634, expressed
Gm23179 2 142381988 to 142382291 303 + unclassified non-coding RNA gene predicted gene, 23179
Tssr20495 2 142570465 to 142570467 2 + TSS region transcription start site region 20495
Rpl26-ps5 2 142570508 to 142570946 438 + pseudogene ribosomal protein L26, pseudogene 5
Tssr20496 2 142576897 to 142576912 15 + TSS region transcription start site region 20496
Rbmx2-ps 2 142576928 to 142577857 929 + pseudogene RNA binding motif protein, X-linked 2, pseudogene
Kif16b 2 142618340 to 142901594 283254 - protein coding gene kinesin family member 16B
Tssr20497 2 142631995 to 142632007 12 + TSS region transcription start site region 20497
Tssr20498 2 142632048 to 142632060 12 + TSS region transcription start site region 20498
D2Mit21 2 142689947 to 142690215 268 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 21
Tssr20499 2 142699610 to 142699623 13 + TSS region transcription start site region 20499
D2Mit259 2 142751556 to 142751697 141 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 259
Bhr1 2 142751556 to 178800659 36049103 QTL bronchial hyperresponsiveness 1
Tssr26558 2 142758048 to 142758056 8 - TSS region transcription start site region 26558
Tssr26559 2 142766259 to 142766261 2 - TSS region transcription start site region 26559
Tssr26560 2 142778467 to 142778471 4 - TSS region transcription start site region 26560
Gm22310 2 142786896 to 142787011 115 + snoRNA gene predicted gene, 22310
D2Dcr119 2 142797479 to 142797576 97 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 119
Tssr26561 2 142838210 to 142838235 25 - TSS region transcription start site region 26561
Tssr26562 2 142879585 to 142879604 19 - TSS region transcription start site region 26562
Tssr26563 2 142879625 to 142879636 11 - TSS region transcription start site region 26563
Cpgi12341 2 142901027 to 142901899 872 CpG island CpG island 12341
Tssr26564 2 142901434 to 142901474 40 - TSS region transcription start site region 26564
Tssr26565 2 142901506 to 142901576 70 - TSS region transcription start site region 26565
Cpgi12342 2 142902931 to 142903283 352 CpG island CpG island 12342
Tssr20500 2 142902965 to 142902976 11 + TSS region transcription start site region 20500
Kif16bos 2 142902965 to 142903572 607 + antisense lncRNA gene kinesin family member 16B, opposite strand
D2Dcr89 2 142938798 to 142938924 126 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 89
Cpgi12343 2 143062824 to 143063618 794 CpG island CpG island 12343
Tssr20501 2 143063031 to 143063077 46 + TSS region transcription start site region 20501
Snrpb2 2 143063069 to 143072052 8983 + protein coding gene U2 small nuclear ribonucleoprotein B
Tssr20502 2 143071498 to 143071515 17 + TSS region transcription start site region 20502
Tssr20503 2 143078467 to 143078482 15 + TSS region transcription start site region 20503
Otor 2 143078492 to 143081700 3208 + protein coding gene otoraplin
Tssr674 2 143080013 to 143080021 8 - TSS region transcription start site region 674
Tssr26566 2 143081229 to 143081246 17 - TSS region transcription start site region 26566
Tssr26567 2 143081688 to 143081712 24 - TSS region transcription start site region 26567
D2Dcr120 2 143118491 to 143118587 96 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 120
Gm14083 2 143129720 to 143130339 619 - pseudogene predicted gene 14083
Gm14082 2 143150830 to 143151630 800 - pseudogene predicted gene 14082
D2Mit137 2 143174494 to 143174581 87 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 137
Tssr675 2 143282775 to 143282776 1 + TSS region transcription start site region 675
Gm11644 2 143349512 to 143349661 149 + pseudogene predicted gene 11644
Tssr20504 2 143368736 to 143368738 2 + TSS region transcription start site region 20504
D2Dcr121 2 143369776 to 143369884 108 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 121
D2Mit513 2 143412744 to 143412888 144 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology-513
Gm33599 2 143420619 to 143487158 66539 - lncRNA gene predicted gene, 33599
Gm11645 2 143506411 to 143507059 648 - pseudogene predicted gene 11645
Pcsk2os1 2 143535476 to 143547837 12361 - antisense lncRNA gene proprotein convertase subtilisin/kexin type 2, opposite strand 1
Cpgi12344 2 143545523 to 143546577 1054 CpG island CpG island 12344
Tssr20505 2 143546144 to 143546215 71 + TSS region transcription start site region 20505
Pcsk2 2 143546156 to 143816285 270129 + protein coding gene proprotein convertase subtilisin/kexin type 2
Tssr20506 2 143546218 to 143546231 13 + TSS region transcription start site region 20506
Cpgi12345 2 143546947 to 143547259 312 CpG island CpG island 12345
Cpgi12346 2 143547632 to 143548133 501 CpG island CpG island 12346
D2Dcr122 2 143590803 to 143590898 95 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 122
D2Dcr123 2 143593006 to 143593104 98 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 123
Tssr676 2 143696655 to 143696659 4 + TSS region transcription start site region 676
Pcsk2os2 2 143747583 to 143789186 41603 - antisense lncRNA gene proprotein convertase subtilisin/kexin type 2, opposite strand 2
Bfsp1 2 143826528 to 143863173 36645 - protein coding gene beaded filament structural protein 1, in lens-CP94
Tssr20507 2 143855614 to 143855620 6 + TSS region transcription start site region 20507
Rps13-ps6 2 143855649 to 143856076 427 + pseudogene ribosomal protein S13, pseudogene 6
Tssr26568 2 143860470 to 143860479 9 - TSS region transcription start site region 26568
Cpgi12347 2 143862304 to 143863230 926 CpG island CpG island 12347
Tssr26569 2 143862933 to 143862950 17 - TSS region transcription start site region 26569
Gm33648 2 143863279 to 143872816 9537 + lncRNA gene predicted gene, 33648
Gm11673 2 143877949 to 143878279 330 + pseudogene predicted gene 11673
Gm11686 2 143881177 to 143881509 332 + pseudogene predicted gene 11686
Tssr20508 2 143912527 to 143912531 4 + TSS region transcription start site region 20508
Cpgi12348 2 143914807 to 143916045 1238 CpG island CpG island 12348
Tssr20509 2 143915273 to 143915337 64 + TSS region transcription start site region 20509
Dstn 2 143915331 to 143943324 27993 + protein coding gene destrin
Tssr20510 2 143915503 to 143915535 32 + TSS region transcription start site region 20510
Tssr20511 2 143915541 to 143915568 27 + TSS region transcription start site region 20511
Tssr20512 2 143919206 to 143919211 5 + TSS region transcription start site region 20512
D2Dcr90 2 143931519 to 143931628 109 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 90
Bsbob 2 143931525 to 165823099 21891574 QTL BSB obesity
D2Mit194 2 143931525 to 143931638 113 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 194
Gnf1 2 143931525 to 169276004 25344479 QTL growth and fatness 1
Wg2d 2 143931525 to 160461088 16529563 QTL weight gain in high growth mice 2d
Tssr20513 2 143936253 to 143936257 4 + TSS region transcription start site region 20513
Tssr20514 2 143938545 to 143938589 44 + TSS region transcription start site region 20514