Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:138382644-141632744

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104 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Btbd3 2 138256565 to 138589292 332727 + protein coding gene BTB (POZ) domain containing 3
Gm40022 2 138517959 to 138523711 5752 + pseudogene predicted gene, 40022
Gm14061 2 138589392 to 138649122 59730 + lincRNA gene predicted gene 14061
D2Mit209 2 138700655 to 138700775 120 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 209
D2Mit209.2 2 138700750 to 138700863 113 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 209.2
Tssr20461 2 138714629 to 138714640 11 + TSS region transcription start site region 20461
Mir1952 2 138819929 to 138820007 78 + miRNA gene microRNA 1952
Gm14065 2 138872023 to 138872607 584 + pseudogene predicted gene 14065
Nktcn2 2 138895496 to 146052033 7156537 QTL natural killer T cell numbers 2
D2Mit490 2 138895496 to 138895600 104 DNA segment DNA Segment, Chr 2 Massachusetts Institute of Technology 490
Gm14067 2 138916619 to 138916932 313 - pseudogene predicted gene 14067
Gm14069 2 139175897 to 139176125 228 - pseudogene predicted gene 14069
Gm14066 2 139256344 to 139306924 50580 - unclassified non-coding RNA gene predicted gene 14066
Gm14071 2 139383832 to 139384340 508 - pseudogene predicted gene 14071
D2Mit339 2 139444611 to 139444750 139 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 339
Sptlc3 2 139493913 to 139637674 143761 + protein coding gene serine palmitoyltransferase, long chain base subunit 3
Tssr20462 2 139493914 to 139493923 9 + TSS region transcription start site region 20462
Tssr20463 2 139493932 to 139493937 5 + TSS region transcription start site region 20463
Tssr20464 2 139493954 to 139493972 18 + TSS region transcription start site region 20464
Tssr20465 2 139493976 to 139494015 39 + TSS region transcription start site region 20465
Tssr20466 2 139494038 to 139494050 12 + TSS region transcription start site region 20466
Tssr20467 2 139494053 to 139494063 10 + TSS region transcription start site region 20467
Tssr20468 2 139494118 to 139494175 57 + TSS region transcription start site region 20468
Tssr20469 2 139494192 to 139494197 5 + TSS region transcription start site region 20469
Tssr20470 2 139546017 to 139546020 3 + TSS region transcription start site region 20470
Tssr20471 2 139579468 to 139579478 10 + TSS region transcription start site region 20471
Gm27385 2 139588227 to 139588330 103 + snRNA gene predicted gene, 27385
Tssr20472 2 139601218 to 139601221 3 + TSS region transcription start site region 20472
3021401L19Rik 2 139673240 to 139675390 2150 unclassified gene RIKEN cDNA 3021401L19 gene
Cpgi12335 2 139677027 to 139679191 2164 CpG island CpG island 12335
Tssr20473 2 139677177 to 139677194 17 + TSS region transcription start site region 20473
Tssr20474 2 139677701 to 139677720 19 + TSS region transcription start site region 20474
Ism1 2 139678178 to 139758581 80403 + protein coding gene isthmin 1, angiogenesis inhibitor
Tssr20475 2 139678637 to 139678680 43 + TSS region transcription start site region 20475
Cpgi12336 2 139745821 to 139746031 210 CpG island CpG island 12336
Tasp1 2 139833480 to 140066805 233325 - protein coding gene taspase, threonine aspartase 1
Gm14070 2 139863297 to 139863724 427 + pseudogene predicted gene 14070
D2Dcr83 2 140007644 to 140007744 100 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 83
Tssr26537 2 140019458 to 140019464 6 - TSS region transcription start site region 26537
D2Dcr84 2 140034964 to 140035061 97 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 84
D2Mit138 2 140041095 to 140041211 116 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 138
Hrtfm5 2 140041095 to 140041211 116 QTL heart failure modifier 5
Tssr26538 2 140042122 to 140042132 10 - TSS region transcription start site region 26538
Tssr26539 2 140042139 to 140042170 31 - TSS region transcription start site region 26539
Tssr26540 2 140042172 to 140042192 20 - TSS region transcription start site region 26540
Tssr20476 2 140056007 to 140056020 13 + TSS region transcription start site region 20476
Tssr20477 2 140056035 to 140056047 12 + TSS region transcription start site region 20477
Tssr20478 2 140056052 to 140056063 11 + TSS region transcription start site region 20478
Tssr26541 2 140060215 to 140060222 7 - TSS region transcription start site region 26541
Tssr26542 2 140065825 to 140065847 22 - TSS region transcription start site region 26542
Cpgi12337 2 140066316 to 140067208 892 CpG island CpG island 12337
Tssr26543 2 140066661 to 140066796 135 - TSS region transcription start site region 26543
Rps19-ps7 2 140073032 to 140073469 437 - pseudogene ribosomal protein S19, pseudogene 7
Gm14073 2 140110022 to 140110402 380 - pseudogene predicted gene 14073
Esf1 2 140119881 to 140170558 50677 - protein coding gene ESF1 nucleolar pre-rRNA processing protein homolog
Gm17374 2 140152043 to 140153532 1489 + protein coding gene predicted gene, 17374
Cpgi12338 2 140170197 to 140171089 892 CpG island CpG island 12338
Tssr26544 2 140170528 to 140170569 41 - TSS region transcription start site region 26544
Tssr20479 2 140170641 to 140170701 60 + TSS region transcription start site region 20479
Ndufaf5 2 140170649 to 140203689 33040 + protein coding gene NADH:ubiquinone oxidoreductase complex assembly factor 5
Tssr20480 2 140171016 to 140171043 27 + TSS region transcription start site region 20480
Sel1l2 2 140229855 to 140389706 159851 - protein coding gene sel-1 suppressor of lin-12-like 2 (C. elegans)
Tssr26545 2 140389698 to 140389729 31 - TSS region transcription start site region 26545
Tssr26546 2 140389731 to 140389738 7 - TSS region transcription start site region 26546
Cpgi12339 2 140394951 to 140396428 1477 CpG island CpG island 12339
Macrod2 2 140395356 to 142392966 1997610 + protein coding gene MACRO domain containing 2
Tssr20481 2 140395421 to 140395438 17 + TSS region transcription start site region 20481
Tssr20482 2 140395446 to 140395465 19 + TSS region transcription start site region 20482
Gm23846 2 140440541 to 140440647 106 - snRNA gene predicted gene, 23846
Tssr20483 2 140589531 to 140589537 6 + TSS region transcription start site region 20483
Tssr26547 2 140592374 to 140592375 1 - TSS region transcription start site region 26547
Tssr20484 2 140598485 to 140598496 11 + TSS region transcription start site region 20484
Gm39948 2 140634204 to 140645746 11542 + lncRNA gene predicted gene, 39948
Flrt3 2 140658198 to 140671476 13278 - protein coding gene fibronectin leucine rich transmembrane protein 3
Tssr26548 2 140659688 to 140659715 27 - TSS region transcription start site region 26548
Tssr26549 2 140660368 to 140660388 20 - TSS region transcription start site region 26549
Cpgi12340 2 140671348 to 140671510 162 CpG island CpG island 12340
Tssr673 2 140671380 to 140671387 7 - TSS region transcription start site region 673
Tssr26550 2 140671406 to 140671427 21 - TSS region transcription start site region 26550
Tssr26551 2 140671428 to 140671439 11 - TSS region transcription start site region 26551
Tssr26552 2 140671440 to 140671458 18 - TSS region transcription start site region 26552
Tssr26553 2 140671462 to 140671476 14 - TSS region transcription start site region 26553
Tssr26554 2 140773552 to 140773555 3 - TSS region transcription start site region 26554
Tssr20485 2 140783689 to 140783702 13 + TSS region transcription start site region 20485
Tssr26555 2 140790432 to 140790449 17 - TSS region transcription start site region 26555
Calr-ps 2 140955765 to 140956249 484 - pseudogene calreticulin, pseudogene
Tssr26556 2 140955957 to 140955986 29 - TSS region transcription start site region 26556
Tssr26557 2 140956059 to 140956071 12 - TSS region transcription start site region 26557
Tssr20486 2 140965927 to 140965946 19 + TSS region transcription start site region 20486
D2Dcr85 2 141008401 to 141008513 112 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 85
D2Dcr86 2 141019932 to 141020027 95 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 86
D2Mit166 2 141095391 to 141095504 113 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 166
Pgia2 2 141095391 to 141095504 113 QTL proteoglycan induced arthritis 2
Zcchc9-ps 2 141127280 to 141128062 782 + pseudogene zinc finger, CCHC domain containing 9, pseudogene
2900060K15Rik 2 141175069 to 141176396 1327 unclassified gene RIKEN cDNA 2900060K15 gene
Tssr20487 2 141179999 to 141180006 7 + TSS region transcription start site region 20487
Tssr20488 2 141182898 to 141182900 2 + TSS region transcription start site region 20488
Macrod2os2 2 141229670 to 141235426 5756 - antisense lncRNA gene MACRO domain containing 2, opposite strand 2
Macrod2os1 2 141230431 to 141286991 56560 - antisense lncRNA gene MACRO domain containing 2, opposite strand 1
D2Mit526.1 2 141346087 to 141346196 109 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 526.1
D2Mit526 2 141346175 to 141346285 110 DNA segment DNA Segment, Chr 2, Massachusetts Institute of Technology 526
D2Mit526.2 2 141346262 to 141346374 112 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 526.2
D2Mit422 2 141375144 to 141375267 123 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 422
Tssr20489 2 141611824 to 141611826 2 + TSS region transcription start site region 20489