Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 2:137035622-139695631

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72 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Slx4ip 2 136891218 to 137071950 180732 + protein coding gene SLX4 interacting protein
Jag1 2 137081451 to 137116520 35069 - protein coding gene jagged 1
Tssr26525 2 137082008 to 137082022 14 - TSS region transcription start site region 26525
Tssr26526 2 137082148 to 137082153 5 - TSS region transcription start site region 26526
Tssr26527 2 137093450 to 137093461 11 - TSS region transcription start site region 26527
Tssr26528 2 137095568 to 137095572 4 - TSS region transcription start site region 26528
Tssr670 2 137095738 to 137095776 38 - TSS region transcription start site region 670
Cpgi12332 2 137114239 to 137117735 3496 CpG island CpG island 12332
Tssr26529 2 137116333 to 137116350 17 - TSS region transcription start site region 26529
Tssr26530 2 137116395 to 137116406 11 - TSS region transcription start site region 26530
Tssr26531 2 137116442 to 137116451 9 - TSS region transcription start site region 26531
Tssr26532 2 137116624 to 137116628 4 - TSS region transcription start site region 26532
Tssr26533 2 137116721 to 137116735 14 - TSS region transcription start site region 26533
Tssr26534 2 137116755 to 137116773 18 - TSS region transcription start site region 26534
Tssr20451 2 137194354 to 137194357 3 + TSS region transcription start site region 20451
Gm28214 2 137198983 to 137199732 749 + lincRNA gene predicted gene 28214
Gm39944 2 137263996 to 137279539 15543 + lncRNA gene predicted gene, 39944
Gm14055 2 137288503 to 137329126 40623 + lincRNA gene predicted gene 14055
Tssr671 2 137528351 to 137528352 1 + TSS region transcription start site region 671
Tssr20452 2 137663424 to 137663436 12 + TSS region transcription start site region 20452
Gm14064 2 137663425 to 137722403 58978 + lincRNA gene predicted gene 14064
Tssr20453 2 137676209 to 137676210 1 + TSS region transcription start site region 20453
Tssr20454 2 137855850 to 137855856 6 + TSS region transcription start site region 20454
Gm14062 2 137871335 to 137876831 5496 - lincRNA gene predicted gene 14062
Tssr26535 2 138081524 to 138081526 2 - TSS region transcription start site region 26535
D2Mit108 2 138084327 to 138084516 189 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 108
Tssr26536 2 138112198 to 138112201 3 - TSS region transcription start site region 26536
D2Dcr82 2 138247548 to 138247648 100 DNA segment DNA Segment, Chr 2, Derry C. Roopenian 82
Cpgi12333 2 138256467 to 138257349 882 CpG island CpG island 12333
Tssr20455 2 138256530 to 138256615 85 + TSS region transcription start site region 20455
Btbd3 2 138256565 to 138589292 332727 + protein coding gene BTB (POZ) domain containing 3
Tssr20456 2 138256617 to 138256677 60 + TSS region transcription start site region 20456
Tssr20457 2 138278396 to 138278407 11 + TSS region transcription start site region 20457
Tssr20458 2 138278469 to 138278480 11 + TSS region transcription start site region 20458
Tssr20459 2 138278481 to 138278531 50 + TSS region transcription start site region 20459
Tssr672 2 138279049 to 138279061 12 + TSS region transcription start site region 672
Cpgi12334 2 138280311 to 138280485 174 CpG island CpG island 12334
D2Mit353 2 138299435 to 138299634 199 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 353
Tssr20460 2 138365622 to 138365631 9 + TSS region transcription start site region 20460
Gm40022 2 138517959 to 138523711 5752 + pseudogene predicted gene, 40022
Gm14061 2 138589392 to 138649122 59730 + lincRNA gene predicted gene 14061
D2Mit209 2 138700655 to 138700775 120 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 209
D2Mit209.2 2 138700750 to 138700863 113 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 209.2
Tssr20461 2 138714629 to 138714640 11 + TSS region transcription start site region 20461
Mir1952 2 138819929 to 138820007 78 + miRNA gene microRNA 1952
Gm14065 2 138872023 to 138872607 584 + pseudogene predicted gene 14065
D2Mit490 2 138895496 to 138895600 104 DNA segment DNA Segment, Chr 2 Massachusetts Institute of Technology 490
Nktcn2 2 138895496 to 146052033 7156537 QTL natural killer T cell numbers 2
Gm14067 2 138916619 to 138916932 313 - pseudogene predicted gene 14067
Gm14069 2 139175897 to 139176125 228 - pseudogene predicted gene 14069
Gm14066 2 139256344 to 139306924 50580 - unclassified non-coding RNA gene predicted gene 14066
Gm14071 2 139383832 to 139384340 508 - pseudogene predicted gene 14071
D2Mit339 2 139444611 to 139444750 139 DNA segment DNA segment, Chr 2, Massachusetts Institute of Technology 339
Sptlc3 2 139493913 to 139637674 143761 + protein coding gene serine palmitoyltransferase, long chain base subunit 3
Tssr20462 2 139493914 to 139493923 9 + TSS region transcription start site region 20462
Tssr20463 2 139493932 to 139493937 5 + TSS region transcription start site region 20463
Tssr20464 2 139493954 to 139493972 18 + TSS region transcription start site region 20464
Tssr20465 2 139493976 to 139494015 39 + TSS region transcription start site region 20465
Tssr20466 2 139494038 to 139494050 12 + TSS region transcription start site region 20466
Tssr20467 2 139494053 to 139494063 10 + TSS region transcription start site region 20467
Tssr20468 2 139494118 to 139494175 57 + TSS region transcription start site region 20468
Tssr20469 2 139494192 to 139494197 5 + TSS region transcription start site region 20469
Tssr20470 2 139546017 to 139546020 3 + TSS region transcription start site region 20470
Tssr20471 2 139579468 to 139579478 10 + TSS region transcription start site region 20471
Gm27385 2 139588227 to 139588330 103 + snRNA gene predicted gene, 27385
Tssr20472 2 139601218 to 139601221 3 + TSS region transcription start site region 20472
3021401L19Rik 2 139673240 to 139675390 2150 unclassified gene RIKEN cDNA 3021401L19 gene
Cpgi12335 2 139677027 to 139679191 2164 CpG island CpG island 12335
Tssr20473 2 139677177 to 139677194 17 + TSS region transcription start site region 20473
Tssr20474 2 139677701 to 139677720 19 + TSS region transcription start site region 20474
Ism1 2 139678178 to 139758581 80403 + protein coding gene isthmin 1, angiogenesis inhibitor
Tssr20475 2 139678637 to 139678680 43 + TSS region transcription start site region 20475